F-box protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Beta-prop_KIB1-4 | PF03478 | 122 - 288 | 1.1e-25 | KIB1-4 beta-propeller |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AbsI | CCTCGAGG | 1 cut(s) | 335 |
| AciI | CCGC | 1 cut(s) | 70 |
| AclWI | GGATC | 1 cut(s) | 417 |
| AcoI | YGGCCR | 2 cut(s) | 71, 454 |
| AcsI | RAATTY | 4 cut(s) | 376, 430, 712, 932 |
| AfaI | GTAC | 3 cut(s) | 140, 498, 616 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 359, 557, 604 |
| AgsI | TTSAA | 6 cut(s) | 262, 349, 482, 664, 907, 920 |
| AjnI | CCWGG | 1 cut(s) | 352 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 630, 662 |
| AluBI | AGCT | 3 cut(s) | 80, 298, 571 |
| AluI | AGCT | 3 cut(s) | 80, 298, 571 |
| Alw26I | GTCTC | 2 cut(s) | 775, 832 |
| AlwI | GGATC | 1 cut(s) | 417 |
| Ama87I | CYCGRG | 1 cut(s) | 335 |
| AoxI | GGCC | 4 cut(s) | 71, 361, 454, 792 |
| ApeKI | GCWGC | 2 cut(s) | 122, 322 |
| ApoI | RAATTY | 4 cut(s) | 376, 430, 712, 932 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 249 |
| AspS9I | GGNCC | 5 cut(s) | 445, 548, 594, 667, 693 |
| AsuC2I | CCSGG | 1 cut(s) | 913 |
| AsuHPI | GGTGA | 1 cut(s) | 238 |
| AvaI | CYCGRG | 1 cut(s) | 335 |
| AvaII | GGWCC | 5 cut(s) | 445, 548, 594, 667, 693 |
| BanII | GRGCYC | 1 cut(s) | 730 |
| BbsI | GAAGAC | 1 cut(s) | 489 |
| BbvI | GCAGC | 2 cut(s) | 109, 309 |
| BccI | CCATC | 3 cut(s) | 299, 866, 945 |
| BceAI | ACGGC | 1 cut(s) | 441 |
| BciT130I | CCWGG | 1 cut(s) | 354 |
| BciVI | GTATCC | 1 cut(s) | 339 |
| BcnI | CCSGG | 1 cut(s) | 913 |
| BcoDI | GTCTC | 2 cut(s) | 775, 832 |
| BfaI | CTAG | 1 cut(s) | 359 |
| BfmI | CTRYAG | 1 cut(s) | 323 |
| BfuI | GTATCC | 1 cut(s) | 339 |
| BisI | GCNGC | 3 cut(s) | 71, 123, 323 |
| BlsI | GCNGC | 3 cut(s) | 72, 124, 324 |
| Bme1390I | CCNGG | 2 cut(s) | 354, 913 |
| Bme18I | GGWCC | 5 cut(s) | 445, 548, 594, 667, 693 |
| BmeT110I | CYCGRG | 1 cut(s) | 335 |
| BmgT120I | GGNCC | 5 cut(s) | 445, 548, 594, 667, 693 |
| BmiI | GGNNCC | 3 cut(s) | 595, 596, 669 |
| BmrFI | CCNGG | 2 cut(s) | 354, 913 |
| BmsI | GCATC | 3 cut(s) | 109, 641, 776 |
| BpiI | GAAGAC | 1 cut(s) | 489 |
| BpmI | CTGGAG | 1 cut(s) | 501 |
| Bpu10I | CCTNAGC | 1 cut(s) | 489 |
| BpuEI | CTTGAG | 1 cut(s) | 757 |
| BpuMI | CCSGG | 1 cut(s) | 913 |
| Bsa29I | ATCGAT | 1 cut(s) | 882 |
| BsaI | GGTCTC | 1 cut(s) | 775 |
| BsaJI | CCNNGG | 2 cut(s) | 189, 364 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 162, 192, 814, 844 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 359, 557, 604 |
| Bse1I | ACTGG | 1 cut(s) | 319 |
| BseBI | CCWGG | 1 cut(s) | 354 |
| BseCI | ATCGAT | 1 cut(s) | 882 |
| BseDI | CCNNGG | 2 cut(s) | 189, 364 |
| BseGI | GGATG | 5 cut(s) | 124, 271, 656, 791, 877 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 359, 557, 604 |
| BseMII | CTCAG | 2 cut(s) | 714, 786 |
| BseNI | ACTGG | 1 cut(s) | 319 |
| BseXI | GCAGC | 2 cut(s) | 109, 309 |
| Bsh1285I | CGRYCG | 1 cut(s) | 886 |
| BshFI | GGCC | 4 cut(s) | 73, 363, 456, 794 |
| BshVI | ATCGAT | 1 cut(s) | 882 |
| BsiEI | CGRYCG | 1 cut(s) | 886 |
| BsiHKCI | CYCGRG | 1 cut(s) | 335 |
| BsiSI | CCGG | 1 cut(s) | 912 |
| BslFI | GGGAC | 3 cut(s) | 580, 653, 889 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 359, 557, 604 |
| BsmAI | GTCTC | 2 cut(s) | 775, 832 |
| BsmFI | GGGAC | 3 cut(s) | 580, 653, 889 |
| BsnI | GGCC | 4 cut(s) | 73, 363, 456, 794 |
| Bso31I | GGTCTC | 1 cut(s) | 775 |
| BsoBI | CYCGRG | 1 cut(s) | 335 |
| Bsp1286I | GDGCHC | 1 cut(s) | 730 |
| Bsp1407I | TGTACA | 1 cut(s) | 138 |
| Bsp143I | GATC | 2 cut(s) | 409, 883 |
| BspACI | CCGC | 1 cut(s) | 70 |
| BspANI | GGCC | 4 cut(s) | 73, 363, 456, 794 |
| BspCNI | CTCAG | 2 cut(s) | 713, 785 |
| BspDI | ATCGAT | 1 cut(s) | 882 |
| BspLI | GGNNCC | 3 cut(s) | 595, 596, 669 |
| BspMAI | CTGCAG | 1 cut(s) | 327 |
| BspPI | GGATC | 1 cut(s) | 417 |
| BspTNI | GGTCTC | 1 cut(s) | 775 |
| BsrGI | TGTACA | 1 cut(s) | 138 |
| BsrI | ACTGG | 1 cut(s) | 319 |
| BssECI | CCNNGG | 2 cut(s) | 189, 364 |
| BssMI | GATC | 2 cut(s) | 409, 883 |
| BssT1I | CCWWGG | 2 cut(s) | 189, 364 |
| Bst2UI | CCWGG | 1 cut(s) | 354 |
| Bst4CI | ACNGT | 2 cut(s) | 232, 826 |
| Bst6I | CTCTTC | 2 cut(s) | 99, 737 |
| BstAUI | TGTACA | 1 cut(s) | 138 |
| BstDEI | CTNAG | 4 cut(s) | 489, 700, 772, 844 |
| BstF5I | GGATG | 5 cut(s) | 124, 271, 656, 791, 877 |
| BstKTI | GATC | 2 cut(s) | 412, 886 |
| BstMAI | GTCTC | 2 cut(s) | 775, 832 |
| BstMBI | GATC | 2 cut(s) | 409, 883 |
| BstMCI | CGRYCG | 1 cut(s) | 886 |
| BstNI | CCWGG | 1 cut(s) | 354 |
| BstSCI | CCNGG | 2 cut(s) | 352, 911 |
| BstSFI | CTRYAG | 1 cut(s) | 323 |
| BstV1I | GCAGC | 2 cut(s) | 109, 309 |
| BstV2I | GAAGAC | 1 cut(s) | 489 |
| BstX2I | RGATCY | 1 cut(s) | 409 |
| BstYI | RGATCY | 1 cut(s) | 409 |
| Bsu15I | ATCGAT | 1 cut(s) | 882 |
| BsuI | GTATCC | 1 cut(s) | 339 |
| BsuRI | GGCC | 4 cut(s) | 73, 363, 456, 794 |
| BsuTUI | ATCGAT | 1 cut(s) | 882 |
| BtsCI | GGATG | 5 cut(s) | 124, 271, 656, 791, 877 |
| Cfr13I | GGNCC | 5 cut(s) | 445, 548, 594, 667, 693 |
| ClaI | ATCGAT | 1 cut(s) | 882 |
| Csp6I | GTAC | 3 cut(s) | 139, 497, 615 |
| CviAII | CATG | 1 cut(s) | 690 |
| CviQI | GTAC | 3 cut(s) | 139, 497, 615 |
| DdeI | CTNAG | 4 cut(s) | 489, 700, 772, 844 |
| DpnI | GATC | 2 cut(s) | 411, 885 |
| DpnII | GATC | 2 cut(s) | 409, 883 |
| EaeI | YGGCCR | 2 cut(s) | 71, 454 |
| Eam1104I | CTCTTC | 2 cut(s) | 99, 737 |
| EarI | CTCTTC | 2 cut(s) | 99, 737 |
| Eco130I | CCWWGG | 2 cut(s) | 189, 364 |
| Eco24I | GRGCYC | 1 cut(s) | 730 |
| Eco31I | GGTCTC | 1 cut(s) | 775 |
| Eco47I | GGWCC | 5 cut(s) | 445, 548, 594, 667, 693 |
| Eco88I | CYCGRG | 1 cut(s) | 335 |
| EcoO109I | RGGNCCY | 2 cut(s) | 594, 667 |
| EcoRI | GAATTC | 1 cut(s) | 932 |
| EcoRII | CCWGG | 1 cut(s) | 352 |
| EcoT14I | CCWWGG | 2 cut(s) | 189, 364 |
| EcoT38I | GRGCYC | 1 cut(s) | 730 |
| ErhI | CCWWGG | 2 cut(s) | 189, 364 |
| FaeI | CATG | 1 cut(s) | 693 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 188, 220, 736, 768 |
| FaqI | GGGAC | 3 cut(s) | 580, 653, 889 |
| FatI | CATG | 1 cut(s) | 689 |
| Fnu4HI | GCNGC | 3 cut(s) | 71, 123, 323 |
| FokI | GGATG | 5 cut(s) | 131, 258, 663, 798, 884 |
| FriOI | GRGCYC | 1 cut(s) | 730 |
| Fsp4HI | GCNGC | 3 cut(s) | 71, 123, 323 |
| FspBI | CTAG | 1 cut(s) | 359 |
| GluI | GCNGC | 3 cut(s) | 71, 123, 323 |
| GsuI | CTGGAG | 1 cut(s) | 501 |
| HaeIII | GGCC | 4 cut(s) | 73, 363, 456, 794 |
| HapII | CCGG | 1 cut(s) | 912 |
| Hin1II | CATG | 1 cut(s) | 693 |
| HindIII | AAGCTT | 1 cut(s) | 296 |
| HinfI | GANTC | 2 cut(s) | 584, 638 |
| HpaII | CCGG | 1 cut(s) | 912 |
| HphI | GGTGA | 1 cut(s) | 238 |
| Hpy166II | GTNNAC | 3 cut(s) | 170, 445, 615 |
| Hpy188I | TCNGA | 3 cut(s) | 703, 785, 929 |
| Hpy188III | TCNNGA | 5 cut(s) | 34, 302, 518, 736, 811 |
| Hpy8I | GTNNAC | 3 cut(s) | 170, 445, 615 |
| HpyAV | CCTTC | 8 cut(s) | 31, 109, 146, 239, 303, 550, 766, 913 |
| HpyCH4III | ACNGT | 2 cut(s) | 232, 826 |
| HpyCH4V | TGCA | 6 cut(s) | 125, 325, 423, 654, 789, 801 |
| HpyF3I | CTNAG | 4 cut(s) | 489, 700, 772, 844 |
| Hsp92II | CATG | 1 cut(s) | 693 |
| KflI | GGGWCCC | 1 cut(s) | 594 |
| Kzo9I | GATC | 2 cut(s) | 409, 883 |
| LmnI | GCTCC | 1 cut(s) | 520 |
| Lsp1109I | GCAGC | 2 cut(s) | 109, 309 |
| LweI | GCATC | 3 cut(s) | 109, 641, 776 |
| MaeI | CTAG | 1 cut(s) | 359 |
| MaeIII | GTNAC | 1 cut(s) | 226 |
| MalI | GATC | 2 cut(s) | 411, 885 |
| MboI | GATC | 2 cut(s) | 409, 883 |
| MboII | GAAGA | 7 cut(s) | 86, 124, 201, 494, 724, 744, 932 |
| MfeI | CAATTG | 1 cut(s) | 796 |
| MflI | RGATCY | 1 cut(s) | 409 |
| MhlI | GDGCHC | 1 cut(s) | 730 |
| MmeI | TCCRAC | 2 cut(s) | 350, 720 |
| MnlI | CCTC | 9 cut(s) | 102, 331, 344, 529, 697, 740, 760, 862, 881 |
| MroXI | GAANNNNTTC | 1 cut(s) | 249 |
| MseI | TTAA | 7 cut(s) | 174, 278, 294, 380, 387, 861, 949 |
| MslI | CAYNNNNRTG | 2 cut(s) | 217, 504 |
| MspA1I | CMGCKG | 1 cut(s) | 70 |
| MspI | CCGG | 1 cut(s) | 912 |
| MspR9I | CCNGG | 2 cut(s) | 354, 913 |
| MunI | CAATTG | 1 cut(s) | 796 |
| MvaI | CCWGG | 1 cut(s) | 354 |
| NciI | CCSGG | 1 cut(s) | 913 |
| NdeII | GATC | 2 cut(s) | 409, 883 |
| NlaIII | CATG | 1 cut(s) | 693 |
| NlaIV | GGNNCC | 3 cut(s) | 595, 596, 669 |
| NmuCI | GTSAC | 1 cut(s) | 226 |
| PaeR7I | CTCGAG | 1 cut(s) | 335 |
| PdmI | GAANNNNTTC | 1 cut(s) | 249 |
| PfeI | GAWTC | 2 cut(s) | 584, 638 |
| PkrI | GCNGC | 3 cut(s) | 72, 124, 324 |
| Ple19I | CGATCG | 1 cut(s) | 886 |
| PpuMI | RGGWCCY | 2 cut(s) | 594, 667 |
| Psp5II | RGGWCCY | 2 cut(s) | 594, 667 |
| Psp6I | CCWGG | 1 cut(s) | 352 |
| PspGI | CCWGG | 1 cut(s) | 352 |
| PspN4I | GGNNCC | 3 cut(s) | 595, 596, 669 |
| PspPI | GGNCC | 5 cut(s) | 445, 548, 594, 667, 693 |
| PspPPI | RGGWCCY | 2 cut(s) | 594, 667 |
| PspXI | VCTCGAGB | 1 cut(s) | 335 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 733, 765 |
| PstI | CTGCAG | 1 cut(s) | 327 |
| PsuI | RGATCY | 1 cut(s) | 409 |
| PvuI | CGATCG | 1 cut(s) | 886 |
| RsaI | GTAC | 3 cut(s) | 140, 498, 616 |
| RsaNI | GTAC | 3 cut(s) | 139, 497, 615 |
| RseI | CAYNNNNRTG | 2 cut(s) | 217, 504 |
| SaqAI | TTAA | 7 cut(s) | 174, 278, 294, 380, 387, 861, 949 |
| SatI | GCNGC | 3 cut(s) | 71, 123, 323 |
| Sau3AI | GATC | 2 cut(s) | 409, 883 |
| Sau96I | GGNCC | 5 cut(s) | 445, 548, 594, 667, 693 |
| ScrFI | CCNGG | 2 cut(s) | 354, 913 |
| SduI | GDGCHC | 1 cut(s) | 730 |
| SfaNI | GCATC | 3 cut(s) | 109, 641, 776 |
| SfcI | CTRYAG | 1 cut(s) | 323 |
| Sfr274I | CTCGAG | 1 cut(s) | 335 |
| SinI | GGWCC | 5 cut(s) | 445, 548, 594, 667, 693 |
| SlaI | CTCGAG | 1 cut(s) | 335 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 217, 504 |
| SmlI | CTYRAG | 2 cut(s) | 335, 736 |
| SmoI | CTYRAG | 2 cut(s) | 335, 736 |
| SsiI | CCGC | 1 cut(s) | 70 |
| SspMI | CTAG | 1 cut(s) | 359 |
| StyD4I | CCNGG | 2 cut(s) | 352, 911 |
| StyI | CCWWGG | 2 cut(s) | 189, 364 |
| TaaI | ACNGT | 2 cut(s) | 232, 826 |
| TaqI | TCGA | 4 cut(s) | 236, 336, 882, 886 |
| TatI | WGTACW | 3 cut(s) | 138, 496, 614 |
| TauI | GCSGC | 1 cut(s) | 73 |
| TfiI | GAWTC | 2 cut(s) | 584, 638 |
| Tru1I | TTAA | 7 cut(s) | 174, 278, 294, 380, 387, 861, 949 |
| Tru9I | TTAA | 7 cut(s) | 174, 278, 294, 380, 387, 861, 949 |
| TseFI | GTSAC | 1 cut(s) | 226 |
| TseI | GCWGC | 2 cut(s) | 122, 322 |
| Tsp45I | GTSAC | 1 cut(s) | 226 |
| TspDTI | ATGAA | 6 cut(s) | 201, 258, 542, 569, 651, 678 |
| TspGWI | ACGGA | 1 cut(s) | 441 |
| VpaK11BI | GGWCC | 5 cut(s) | 445, 548, 594, 667, 693 |
| XapI | RAATTY | 4 cut(s) | 376, 430, 712, 932 |
| XhoI | CTCGAG | 1 cut(s) | 335 |
| XmnI | GAANNNNTTC | 1 cut(s) | 249 |
| XspI | CTAG | 1 cut(s) | 359 |