RLG00000027389

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000399
Physical Location & Seq
Reverse (-)
11163562 .. 11164728
1167 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027389

Sequence Viewer

Length: 1167 bp
ATGGGAGCAACGATTAGTAATTATCGAAGAAAGAACAACGTCGTGACTACGGCAGCTCATAAGGACTGGTCGAACCTTCATGATCATCAAGATCTTTTTAACTGTTTCACAGAGCAAATAGTTTCCATGAAGGATTTCTATGCTTTTGGAGGAGTTTGCAGATCATGGAGATCAGCAGCGATCAAGGAAAACTCTAATACAGGTCTGAGACTACAGCATAAAGTTCCAGTCCTCCTTCTTCCAAAGGAGATCAATGCTCCCATCCGTAATTTTTACAGCTTGACAAAAGGTCAGATTTACCAACTTGATTTACCAGAAACTATGGGCAAGTTTTGCTATTCTTCTTTAGGATGGTTATTGACTGTATTCGAAGATTTTTCCAAACTTCATCTTTTTAATCCACTAACCCATGTCCAAATTGAGCTGCCTCGTCTGTGGCCAAAAATCATGAAACTTCGAAATATAAACAAGTTTGTATTATCATCGAGTCCTTCTTGGACATCGAATTATGGGGTCATGATTGTATCATATCATAAATTGGCATTTTACAAGCCGGGGTACAACAATGACAAATGGACTTCTGTATCTTTAGGGCCATTAATAATTTTAACGGATGCAATTTATTATAAGGGCCAATTTTATGTCGTGGACTATCTTGGTAAGGTTTTTGCCTGTGAGATAGAAGATCCTAAAAATGCACAAATCAGGGTTGTTGCTGCAGAGATTCCAAAGGAACTACTGTTCGATCCTGAGATTGATTTTAAATTACCATGTTTAGTGGAATCTGCAACAGGGACCTTGTTATTGGTTATCTCTTTATTTGAAGAAGGCAAAACTGAATCAACTGTCGGTTGTAGGGTGTTCGAGGTGCCATTTGATGATGGCAATTCATGGGCAAAATCAGAAGTAAAGAATTTGGGGAATAGAACCTTATTTTTGGGTGCAAACAATTCTTCATTCTCGATTGAGGCTTTAGATGATTCTATATGCAAAGCCAATTGTATTTATTTCTTAAATCGGAGTCATGTCTCCGATGAAGGGCACGTCGACATTGGCATTTACTATATGAAGGATGCAAAAATAGAGCGACACTTTGAAGCATTTCCAGATTTTCAGTACATAGGCAGATCAATAACGTCGCATTCATGGCTTCAACCGAGTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box

Protein Analysis

389

Amino Acids

44.32

Weight (kDa)

6.83

Isoelectric Point (pI)

44.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 91 - 354 1.2e-47 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000399)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 627
AccB1I GGYRCC 1 cut(s) 868
AccI GTMKAC 1 cut(s) 1047
AclWI GGATC 2 cut(s) 680, 740
AcoI YGGCCR 1 cut(s) 437
AcsI RAATTY 1 cut(s) 913
AfaI GTAC 2 cut(s) 560, 1118
AfiI CCNNNNNNNGG 1 cut(s) 1038
AgsI TTSAA 3 cut(s) 824, 1097, 1154
AhdI GACNNNNNGTC 1 cut(s) 288
AjiI CACGTC 1 cut(s) 1045
AloI GAACNNNNNNTCC 2 cut(s) 725, 757
AluBI AGCT 3 cut(s) 56, 279, 424
AluI AGCT 3 cut(s) 56, 279, 424
Alw26I GTCTC 2 cut(s) 202, 1033
AlwI GGATC 2 cut(s) 680, 740
AoxI GGCC 3 cut(s) 437, 593, 631
ApeKI GCWGC 4 cut(s) 53, 176, 424, 716
ApoI RAATTY 1 cut(s) 913
AseI ATTAAT 1 cut(s) 599
Asp700I GAANNNNTTC 2 cut(s) 134, 1101
AspS9I GGNCC 3 cut(s) 593, 631, 795
AsuC2I CCSGG 1 cut(s) 555
AsuII TTCGAA 2 cut(s) 369, 457
AvaII GGWCC 1 cut(s) 795
BaeGI GKGCMC 1 cut(s) 1044
BaeI ACNNNNGTAYC 2 cut(s) 567, 600
BalI TGGCCA 1 cut(s) 439
BanI GGYRCC 1 cut(s) 868
BbvI GCAGC 4 cut(s) 65, 188, 411, 703
BccI CCATC 3 cut(s) 269, 345, 875
BceAI ACGGC 1 cut(s) 66
BclI TGATCA 1 cut(s) 82
BcnI CCSGG 1 cut(s) 555
BcoDI GTCTC 2 cut(s) 202, 1033
BfmI CTRYAG 2 cut(s) 212, 717
BglII AGATCT 1 cut(s) 91
BisI GCNGC 4 cut(s) 54, 177, 425, 717
BlsI GCNGC 4 cut(s) 55, 178, 426, 718
Bme1390I CCNGG 1 cut(s) 555
Bme18I GGWCC 1 cut(s) 795
BmeRI GACNNNNNGTC 1 cut(s) 288
BmgBI CACGTC 1 cut(s) 1045
BmgT120I GGNCC 3 cut(s) 593, 631, 795
BmiI GGNNCC 2 cut(s) 796, 870
BmrFI CCNGG 1 cut(s) 555
BmsI GCATC 2 cut(s) 604, 1063
Bpu14I TTCGAA 2 cut(s) 369, 457
BpuMI CCSGG 1 cut(s) 555
BsaJI CCNNGG 1 cut(s) 554
Bsc4I CCNNNNNNNGG 1 cut(s) 1038
Bse1I ACTGG 2 cut(s) 71, 227
BseDI CCNNGG 1 cut(s) 554
BseGI GGATG 4 cut(s) 261, 356, 619, 1078
BseLI CCNNNNNNNGG 1 cut(s) 1038
BseMII CTCAG 2 cut(s) 197, 741
BseNI ACTGG 2 cut(s) 71, 227
BseRI GAGGAG 1 cut(s) 165
BseSI GKGCMC 1 cut(s) 1044
BseXI GCAGC 4 cut(s) 65, 188, 411, 703
BshFI GGCC 3 cut(s) 439, 595, 633
BshNI GGYRCC 1 cut(s) 868
BsiSI CCGG 1 cut(s) 554
BslFI GGGAC 1 cut(s) 808
BslI CCNNNNNNNGG 1 cut(s) 1038
BsmAI GTCTC 2 cut(s) 202, 1033
BsmFI GGGAC 1 cut(s) 808
BsmI GAATGC 1 cut(s) 1141
BsnI GGCC 3 cut(s) 439, 595, 633
Bsp119I TTCGAA 2 cut(s) 369, 457
Bsp1286I GDGCHC 1 cut(s) 1044
Bsp143I GATC 9 cut(s) 82, 91, 161, 170, 180, 249, 685, 745, 1127
BspANI GGCC 3 cut(s) 439, 595, 633
BspCNI CTCAG 2 cut(s) 198, 742
BspHI TCATGA 3 cut(s) 79, 447, 516
BspLI GGNNCC 2 cut(s) 796, 870
BspMAI CTGCAG 1 cut(s) 721
BspPI GGATC 2 cut(s) 680, 740
BspT104I TTCGAA 2 cut(s) 369, 457
BspT107I GGYRCC 1 cut(s) 868
BsrI ACTGG 2 cut(s) 71, 227
BssECI CCNNGG 1 cut(s) 554
BssMI GATC 9 cut(s) 82, 91, 161, 170, 180, 249, 685, 745, 1127
Bst4CI ACNGT 4 cut(s) 104, 364, 741, 847
BstAPI GCANNNNNTGC 1 cut(s) 333
BstBI TTCGAA 2 cut(s) 369, 457
BstDEI CTNAG 2 cut(s) 206, 750
BstF5I GGATG 4 cut(s) 261, 356, 619, 1078
BstKTI GATC 9 cut(s) 85, 94, 164, 173, 183, 252, 688, 748, 1130
BstMAI GTCTC 2 cut(s) 202, 1033
BstMBI GATC 9 cut(s) 82, 91, 161, 170, 180, 249, 685, 745, 1127
BstMWI GCNNNNNNNGC 2 cut(s) 333, 1147
BstSCI CCNGG 1 cut(s) 553
BstSFI CTRYAG 2 cut(s) 212, 717
BstSLI GKGCMC 1 cut(s) 1044
BstV1I GCAGC 4 cut(s) 65, 188, 411, 703
BstX2I RGATCY 2 cut(s) 91, 685
BstYI RGATCY 2 cut(s) 91, 685
BsuRI GGCC 3 cut(s) 439, 595, 633
BtrI CACGTC 1 cut(s) 1045
BtsCI GGATG 4 cut(s) 261, 356, 619, 1078
CciI TCATGA 3 cut(s) 79, 447, 516
Cfr13I GGNCC 3 cut(s) 593, 631, 795
Csp6I GTAC 2 cut(s) 559, 1117
CviQI GTAC 2 cut(s) 559, 1117
DdeI CTNAG 2 cut(s) 206, 750
DpnI GATC 9 cut(s) 84, 93, 163, 172, 182, 251, 687, 747, 1129
DpnII GATC 9 cut(s) 82, 91, 161, 170, 180, 249, 685, 745, 1127
DraI TTTAAA 1 cut(s) 763
DriI GACNNNNNGTC 1 cut(s) 288
EaeI YGGCCR 1 cut(s) 437
Eam1105I GACNNNNNGTC 1 cut(s) 288
Eco47I GGWCC 1 cut(s) 795
EcoO109I RGGNCCY 1 cut(s) 795
FaqI GGGAC 1 cut(s) 808
FbaI TGATCA 1 cut(s) 82
FblI GTMKAC 1 cut(s) 1047
Fnu4HI GCNGC 4 cut(s) 54, 177, 425, 717
FokI GGATG 4 cut(s) 248, 363, 626, 1085
Fsp4HI GCNGC 4 cut(s) 54, 177, 425, 717
GluI GCNGC 4 cut(s) 54, 177, 425, 717
HaeIII GGCC 3 cut(s) 439, 595, 633
HapII CCGG 1 cut(s) 554
HincII GTYRAC 1 cut(s) 1048
HindII GTYRAC 1 cut(s) 1048
HinfI GANTC 6 cut(s) 487, 724, 782, 839, 980, 1021
HpaII CCGG 1 cut(s) 554
Hpy166II GTNNAC 2 cut(s) 649, 1048
Hpy188I TCNGA 5 cut(s) 207, 294, 904, 1020, 1033
Hpy188III TCNNGA 8 cut(s) 43, 80, 89, 448, 517, 749, 961, 1106
Hpy8I GTNNAC 2 cut(s) 649, 1048
Hpy99I CGWCG 3 cut(s) 44, 1049, 1141
HpyAV CCTTC 7 cut(s) 86, 124, 245, 501, 821, 1031, 1063
HpyCH4III ACNGT 4 cut(s) 104, 364, 741, 847
HpyCH4IV ACGT 3 cut(s) 39, 1044, 1136
HpyCH4V TGCA 8 cut(s) 159, 617, 698, 719, 788, 944, 990, 1076
HpyF10VI GCNNNNNNNGC 2 cut(s) 333, 1147
HpyF3I CTNAG 2 cut(s) 206, 750
HpySE526I ACGT 3 cut(s) 39, 1044, 1136
Ksp22I TGATCA 1 cut(s) 82
Kzo9I GATC 9 cut(s) 82, 91, 161, 170, 180, 249, 685, 745, 1127
LmnI GCTCC 2 cut(s) 5, 262
Lsp1109I GCAGC 4 cut(s) 65, 188, 411, 703
LweI GCATC 2 cut(s) 604, 1063
MaeII ACGT 3 cut(s) 39, 1044, 1136
MaeIII GTNAC 1 cut(s) 43
MalI GATC 9 cut(s) 84, 93, 163, 172, 182, 251, 687, 747, 1129
MboI GATC 9 cut(s) 82, 91, 161, 170, 180, 249, 685, 745, 1127
MboII GAAGA 7 cut(s) 39, 230, 333, 383, 695, 836, 945
MfeI CAATTG 1 cut(s) 997
MflI RGATCY 2 cut(s) 91, 685
MhlI GDGCHC 1 cut(s) 1044
MlsI TGGCCA 1 cut(s) 439
MluNI TGGCCA 1 cut(s) 439
MlyI GAGTC 2 cut(s) 496, 1030
MnlI CCTC 5 cut(s) 143, 242, 438, 859, 961
Mox20I TGGCCA 1 cut(s) 439
MroXI GAANNNNTTC 2 cut(s) 134, 1101
MscI TGGCCA 1 cut(s) 439
MseI TTAA 6 cut(s) 99, 396, 599, 608, 762, 1013
Msp20I TGGCCA 1 cut(s) 439
MspI CCGG 1 cut(s) 554
MspR9I CCNGG 1 cut(s) 555
MunI CAATTG 1 cut(s) 997
Mva1269I GAATGC 1 cut(s) 1141
MwoI GCNNNNNNNGC 2 cut(s) 333, 1147
NciI CCSGG 1 cut(s) 555
NdeII GATC 9 cut(s) 82, 91, 161, 170, 180, 249, 685, 745, 1127
NlaIV GGNNCC 2 cut(s) 796, 870
NmuCI GTSAC 1 cut(s) 43
NspV TTCGAA 2 cut(s) 369, 457
PagI TCATGA 3 cut(s) 79, 447, 516
PctI GAATGC 1 cut(s) 1141
PdmI GAANNNNTTC 2 cut(s) 134, 1101
PfeI GAWTC 4 cut(s) 724, 782, 839, 980
PkrI GCNGC 4 cut(s) 55, 178, 426, 718
PleI GAGTC 2 cut(s) 495, 1029
PpsI GAGTC 2 cut(s) 495, 1029
PpuMI RGGWCCY 1 cut(s) 795
PshBI ATTAAT 1 cut(s) 599
PsiI TTATAA 1 cut(s) 627
Psp5II RGGWCCY 1 cut(s) 795
PspN4I GGNNCC 2 cut(s) 796, 870
PspPI GGNCC 3 cut(s) 593, 631, 795
PspPPI RGGWCCY 1 cut(s) 795
PstI CTGCAG 1 cut(s) 721
PsuI RGATCY 2 cut(s) 91, 685
RsaI GTAC 2 cut(s) 560, 1118
RsaNI GTAC 2 cut(s) 559, 1117
SalI GTCGAC 1 cut(s) 1046
SaqAI TTAA 6 cut(s) 99, 396, 599, 608, 762, 1013
SatI GCNGC 4 cut(s) 54, 177, 425, 717
Sau3AI GATC 9 cut(s) 82, 91, 161, 170, 180, 249, 685, 745, 1127
Sau96I GGNCC 3 cut(s) 593, 631, 795
SchI GAGTC 2 cut(s) 496, 1030
ScrFI CCNGG 1 cut(s) 555
SduI GDGCHC 1 cut(s) 1044
SfaNI GCATC 2 cut(s) 604, 1063
SfcI CTRYAG 2 cut(s) 212, 717
SfuI TTCGAA 2 cut(s) 369, 457
SinI GGWCC 1 cut(s) 795
StyD4I CCNGG 1 cut(s) 553
TaaI ACNGT 4 cut(s) 104, 364, 741, 847
TaiI ACGT 3 cut(s) 42, 1047, 1139
TatI WGTACW 1 cut(s) 1116
TfiI GAWTC 4 cut(s) 724, 782, 839, 980
Tru1I TTAA 6 cut(s) 99, 396, 599, 608, 762, 1013
Tru9I TTAA 6 cut(s) 99, 396, 599, 608, 762, 1013
TseFI GTSAC 1 cut(s) 43
TseI GCWGC 4 cut(s) 53, 176, 424, 716
Tsp45I GTSAC 1 cut(s) 43
TspDTI ATGAA 9 cut(s) 68, 143, 377, 464, 879, 945, 1050, 1082, 1134
TspGWI ACGGA 2 cut(s) 254, 626
VpaK11BI GGWCC 1 cut(s) 795
VspI ATTAAT 1 cut(s) 599
XapI RAATTY 1 cut(s) 913
XmiI GTMKAC 1 cut(s) 1047
XmnI GAANNNNTTC 2 cut(s) 134, 1101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.