Rroxscaffold_7G00176910

F-box protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
16540357 .. 16541586
1230 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00176910.1

Sequence Viewer

Length: 1230 bp
ATGGCGCCCAACTGGTCGTACGATCTTCCCGAAGAGCTTATCATCTCTGTTGCCAAACGGCTGACAGATTCCTTGCAGGAGTTTATTTTTTTCGGTGCAGTTTGCAAATCATGGAGATCAGCCGCCACTGAGGTAAAGGAGAAAAACCCTAATAATATTGCATTGAGATTATTAACACATCAAGTTCCTCTTCTTTTGCTTCCACTTTCTTGTTGGCAACGGCCTCCTCCCATCTTGGTCAGCAACCCGGTTCCTAAAATTATCAGGTCGCCTCCCAAGGAAAAGAGTGAGGGTTTGAATGAGGCAGTTGAATTTTACAGTCTGAAGGGAAAAGGTAATAAGATCAGTTACAAACTTAACCTACCAAAAATATTACCAAAAGCAAGAATGAGGATATGCTTTTCATCTTTTGGATGGCTGGTGATTGTATCTAAAACTGAAGGGTGTGAATGGAGTCTGGTACATCCTTTAAATCATGCCAAAATTGAGCTCCCAGATGTACAGGGGTCTTTGCCACGCAGCGTTGTTTCTGGGTTCCTGGTAGGGAAGTTTGCCTTATCATCGAGCCCTTCTTGGACATCGGATTACATAGTCATGTTTCAATCAGGTCATAGATTTGGTTTTTGCAGGCCAGGGCTGGGTGAAAATTGGAAATACAAAGTATCATGGGGAGATTTAGTAACGGATCCAAGTTATTATAAAGGACAGTTCTATTTCGTGCACCTTTCCAGCCGCATTTCAGTTTTTGATATTGACAAAGAAGAAATAAGGCTTGTTGCTCCAGAATTTCCAAAGGAACAACTTTTAGGTCCTAATGTGCTTATTAAAGAGCACTATTTAGTGGAATCAGCGGGAGTTCTTTTGGTGGTTCTGTTTACTACCACTACCACCAAGTGTAAAGACCAAGGATTAACATTTGGCTGCAGGGTTTTTGAGGTCCCATTTACAAACAGCAAATCGTGGTCGGACTCGGAGGTTAGGAGCTTGGGGAACAGAACCATTTTCCTAAGTAAATGTAGTTCTTCCTTCTCAATCGAGGCATCAGACTATTCTGGATTATGTAAGGCCAATTCCATCTACTTCATGAATAATAAGGTAGTCCTTCCGAGACAAAGCAGAGATATGGGTGTTTTTAATATGAAGGATGGGACAATCACCCGAGACTTTGACAAATTCTTTGATTATGAAGAATTAAGAGGATTCCATTCATGGATTCAACCGAGTTTGTAA

Protein Analysis

409

Amino Acids

46.4

Weight (kDa)

8.98

Isoelectric Point (pI)

47.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 105 - 379 1e-44 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000399)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 699
AccB1I GGYRCC 1 cut(s) 4
AciI CCGC 3 cut(s) 123, 733, 851
AclWI GGATC 2 cut(s) 680, 693
AcsI RAATTY 3 cut(s) 311, 785, 1172
AcuI CTGAAG 2 cut(s) 344, 459
AcyI GRCGYC 1 cut(s) 5
AdeI CACNNNGTG 1 cut(s) 894
AfaI GTAC 3 cut(s) 20, 462, 501
AfiI CCNNNNNNNGG 1 cut(s) 638
AgsI TTSAA 4 cut(s) 298, 311, 602, 1217
AjnI CCWGG 2 cut(s) 537, 631
AluBI AGCT 3 cut(s) 37, 490, 984
AluI AGCT 3 cut(s) 37, 490, 984
Alw21I GWGCWC 3 cut(s) 492, 723, 834
Alw26I GTCTC 2 cut(s) 1102, 1155
Alw44I GTGCAC 1 cut(s) 719
AlwI GGATC 2 cut(s) 680, 693
Ama87I CYCGRG 1 cut(s) 1158
AoxI GGCC 3 cut(s) 221, 629, 1065
ApaLI GTGCAC 1 cut(s) 719
ApeKI GCWGC 2 cut(s) 519, 921
ApoI RAATTY 3 cut(s) 311, 785, 1172
ArsI GACNNNNNNTTYG 2 cut(s) 1160, 1192
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 2 cut(s) 809, 937
AsuC2I CCSGG 1 cut(s) 248
AsuHPI GGTGA 3 cut(s) 433, 653, 1147
AvaI CYCGRG 1 cut(s) 1158
AvaII GGWCC 2 cut(s) 809, 937
BaeGI GKGCMC 1 cut(s) 723
BamHI GGATCC 1 cut(s) 685
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 2 cut(s) 492, 569
Bbv12I GWGCWC 3 cut(s) 492, 723, 834
BbvI GCAGC 2 cut(s) 531, 908
BccI CCATC 4 cut(s) 239, 408, 1082, 1139
BceAI ACGGC 2 cut(s) 74, 236
BciT130I CCWGG 2 cut(s) 539, 633
BcnI CCSGG 1 cut(s) 248
BcoDI GTCTC 2 cut(s) 1102, 1155
BfmI CTRYAG 1 cut(s) 922
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 4 cut(s) 123, 520, 733, 922
BlsI GCNGC 4 cut(s) 124, 521, 734, 923
Bme1390I CCNGG 3 cut(s) 248, 539, 633
Bme18I GGWCC 2 cut(s) 809, 937
BmeT110I CYCGRG 1 cut(s) 1158
BmgT120I GGNCC 2 cut(s) 809, 937
BmiI GGNNCC 5 cut(s) 6, 252, 536, 687, 939
BmrFI CCNGG 3 cut(s) 248, 539, 633
BmsI GCATC 1 cut(s) 1049
BpmI CTGGAG 1 cut(s) 765
BpuMI CCSGG 1 cut(s) 248
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 3 cut(s) 276, 632, 904
BsaXI ACNNNNNCTCC 2 cut(s) 663, 693
Bsc4I CCNNNNNNNGG 1 cut(s) 638
Bse1I ACTGG 1 cut(s) 17
BseBI CCWGG 2 cut(s) 539, 633
BseDI CCNNGG 3 cut(s) 276, 632, 904
BseGI GGATG 3 cut(s) 419, 463, 1150
BseLI CCNNNNNNNGG 1 cut(s) 638
BseMII CTCAG 1 cut(s) 120
BseNI ACTGG 1 cut(s) 17
BseRI GAGGAG 1 cut(s) 216
BseSI GKGCMC 1 cut(s) 723
BseXI GCAGC 2 cut(s) 531, 908
BseYI CCCAGC 1 cut(s) 637
BsgI GTGCAG 1 cut(s) 117
BshFI GGCC 3 cut(s) 223, 631, 1067
BshNI GGYRCC 1 cut(s) 4
BsiHKAI GWGCWC 3 cut(s) 492, 723, 834
BsiHKCI CYCGRG 1 cut(s) 1158
BsiSI CCGG 1 cut(s) 248
BsiWI CGTACG 1 cut(s) 18
BslFI GGGAC 2 cut(s) 923, 1162
BslI CCNNNNNNNGG 1 cut(s) 638
BsmAI GTCTC 2 cut(s) 1102, 1155
BsmFI GGGAC 2 cut(s) 923, 1162
BsnI GGCC 3 cut(s) 223, 631, 1067
BsoBI CYCGRG 1 cut(s) 1158
Bsp1286I GDGCHC 4 cut(s) 492, 569, 723, 834
Bsp1407I TGTACA 1 cut(s) 499
Bsp143I GATC 4 cut(s) 22, 116, 342, 685
BspACI CCGC 3 cut(s) 123, 733, 851
BspANI GGCC 3 cut(s) 223, 631, 1067
BspCNI CTCAG 1 cut(s) 121
BspHI TCATGA 1 cut(s) 1083
BspLI GGNNCC 5 cut(s) 6, 252, 536, 687, 939
BspMAI CTGCAG 1 cut(s) 926
BspPI GGATC 2 cut(s) 680, 693
BspQI GCTCTTC 1 cut(s) 27
BspT107I GGYRCC 1 cut(s) 4
BsrGI TGTACA 1 cut(s) 499
BsrI ACTGG 1 cut(s) 17
BssECI CCNNGG 3 cut(s) 276, 632, 904
BssMI GATC 4 cut(s) 22, 116, 342, 685
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 2 cut(s) 276, 904
Bst2UI CCWGG 2 cut(s) 539, 633
Bst4CI ACNGT 2 cut(s) 320, 708
Bst6I CTCTTC 2 cut(s) 27, 195
BstACI GRCGYC 1 cut(s) 5
BstAUI TGTACA 1 cut(s) 499
BstC8I GCNNGC 1 cut(s) 629
BstDEI CTNAG 2 cut(s) 129, 1007
BstF5I GGATG 3 cut(s) 419, 463, 1150
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 4 cut(s) 25, 119, 345, 688
BstMAI GTCTC 2 cut(s) 1102, 1155
BstMBI GATC 4 cut(s) 22, 116, 342, 685
BstNI CCWGG 2 cut(s) 539, 633
BstSCI CCNGG 3 cut(s) 246, 537, 631
BstSFI CTRYAG 1 cut(s) 922
BstSLI GKGCMC 1 cut(s) 723
BstV1I GCAGC 2 cut(s) 531, 908
BstX2I RGATCY 1 cut(s) 685
BstYI RGATCY 1 cut(s) 685
BsuRI GGCC 3 cut(s) 223, 631, 1067
BtsCI GGATG 3 cut(s) 419, 463, 1150
BtsIMutI CAGTG 1 cut(s) 126
Cac8I GCNNGC 1 cut(s) 629
CciI TCATGA 1 cut(s) 1083
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 2 cut(s) 809, 937
Csp6I GTAC 3 cut(s) 19, 461, 500
CviAII CATG 6 cut(s) 111, 476, 595, 666, 1084, 1209
CviQI GTAC 3 cut(s) 19, 461, 500
DdeI CTNAG 2 cut(s) 129, 1007
DinI GGCGCC 1 cut(s) 6
DpnI GATC 4 cut(s) 24, 118, 344, 687
DpnII GATC 4 cut(s) 22, 116, 342, 685
DraI TTTAAA 1 cut(s) 471
DraIII CACNNNGTG 1 cut(s) 894
Eam1104I CTCTTC 2 cut(s) 27, 195
EarI CTCTTC 2 cut(s) 27, 195
Ecl136II GAGCTC 1 cut(s) 490
Eco130I CCWWGG 2 cut(s) 276, 904
Eco24I GRGCYC 2 cut(s) 492, 569
Eco47I GGWCC 2 cut(s) 809, 937
Eco53kI GAGCTC 1 cut(s) 490
Eco57I CTGAAG 2 cut(s) 344, 459
Eco88I CYCGRG 1 cut(s) 1158
EcoICRI GAGCTC 1 cut(s) 490
EcoO109I RGGNCCY 2 cut(s) 809, 937
EcoRII CCWGG 2 cut(s) 537, 631
EcoT14I CCWWGG 2 cut(s) 276, 904
EcoT38I GRGCYC 2 cut(s) 492, 569
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 276, 904
FaeI CATG 6 cut(s) 114, 479, 598, 669, 1087, 1212
FalI AAGNNNNNCTT 4 cut(s) 174, 206, 539, 571
FaqI GGGAC 2 cut(s) 923, 1162
FatI CATG 6 cut(s) 110, 475, 594, 665, 1083, 1208
FauI CCCGC 1 cut(s) 844
Fnu4HI GCNGC 4 cut(s) 123, 520, 733, 922
FokI GGATG 3 cut(s) 426, 450, 1157
FriOI GRGCYC 2 cut(s) 492, 569
Fsp4HI GCNGC 4 cut(s) 123, 520, 733, 922
GlaI GCGC 1 cut(s) 6
GluI GCNGC 4 cut(s) 123, 520, 733, 922
GsaI CCCAGC 1 cut(s) 641
GsuI CTGGAG 1 cut(s) 765
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 3 cut(s) 223, 631, 1067
HapII CCGG 1 cut(s) 248
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 6 cut(s) 114, 479, 598, 669, 1087, 1212
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 6 cut(s) 68, 454, 845, 968, 1200, 1213
HpaII CCGG 1 cut(s) 248
HphI GGTGA 3 cut(s) 433, 653, 1147
Hpy166II GTNNAC 2 cut(s) 721, 876
Hpy188I TCNGA 6 cut(s) 324, 583, 967, 973, 1045, 1107
Hpy188III TCNNGA 4 cut(s) 29, 782, 1053, 1084
Hpy8I GTNNAC 2 cut(s) 721, 876
HpyAV CCTTC 6 cut(s) 319, 434, 579, 1036, 1112, 1135
HpyCH4III ACNGT 2 cut(s) 320, 708
HpyCH4V TGCA 7 cut(s) 76, 98, 105, 161, 627, 721, 924
HpyF3I CTNAG 2 cut(s) 129, 1007
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 6 cut(s) 114, 479, 598, 669, 1087, 1212
HspAI GCGC 1 cut(s) 5
KasI GGCGCC 1 cut(s) 4
Kzo9I GATC 4 cut(s) 22, 116, 342, 685
LguI GCTCTTC 1 cut(s) 27
LmnI GCTCC 3 cut(s) 495, 784, 981
Lsp1109I GCAGC 2 cut(s) 531, 908
LweI GCATC 1 cut(s) 1049
MaeIII GTNAC 2 cut(s) 347, 679
MalI GATC 4 cut(s) 24, 118, 344, 687
MboI GATC 4 cut(s) 22, 116, 342, 685
MboII GAAGA 6 cut(s) 17, 44, 182, 773, 1014, 1199
MflI RGATCY 1 cut(s) 685
MhlI GDGCHC 4 cut(s) 492, 569, 723, 834
MluCI AATT 8 cut(s) 258, 311, 483, 646, 785, 1069, 1172, 1190
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 2 cut(s) 463, 962
MmeI TCCRAC 1 cut(s) 945
MseI TTAA 7 cut(s) 173, 357, 470, 825, 911, 1134, 1193
MslI CAYNNNNRTG 1 cut(s) 593
MspA1I CMGCKG 1 cut(s) 851
MspI CCGG 1 cut(s) 248
MspR9I CCNGG 3 cut(s) 248, 539, 633
MvaI CCWGG 2 cut(s) 539, 633
NarI GGCGCC 1 cut(s) 5
NciI CCSGG 1 cut(s) 248
NdeII GATC 4 cut(s) 22, 116, 342, 685
NlaIII CATG 6 cut(s) 114, 479, 598, 669, 1087, 1212
NlaIV GGNNCC 5 cut(s) 6, 252, 536, 687, 939
PagI TCATGA 1 cut(s) 1083
PciSI GCTCTTC 1 cut(s) 27
PcsI WCGNNNNNNNCGW 1 cut(s) 27
PfeI GAWTC 4 cut(s) 68, 845, 1200, 1213
Pfl23II CGTACG 1 cut(s) 18
PkrI GCNGC 4 cut(s) 124, 521, 734, 923
PleI GAGTC 2 cut(s) 462, 962
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 2 cut(s) 462, 962
PpuMI RGGWCCY 2 cut(s) 809, 937
PsiI TTATAA 1 cut(s) 699
Psp124BI GAGCTC 1 cut(s) 492
Psp5II RGGWCCY 2 cut(s) 809, 937
Psp6I CCWGG 2 cut(s) 537, 631
PspFI CCCAGC 1 cut(s) 637
PspGI CCWGG 2 cut(s) 537, 631
PspLI CGTACG 1 cut(s) 18
PspN4I GGNNCC 5 cut(s) 6, 252, 536, 687, 939
PspPI GGNCC 2 cut(s) 809, 937
PspPPI RGGWCCY 2 cut(s) 809, 937
PsrI GAACNNNNNNTAC 2 cut(s) 1003, 1035
PstI CTGCAG 1 cut(s) 926
PsuI RGATCY 1 cut(s) 685
RsaI GTAC 3 cut(s) 20, 462, 501
RsaNI GTAC 3 cut(s) 19, 461, 500
RseI CAYNNNNRTG 1 cut(s) 593
SacI GAGCTC 1 cut(s) 492
SapI GCTCTTC 1 cut(s) 27
SaqAI TTAA 7 cut(s) 173, 357, 470, 825, 911, 1134, 1193
SatI GCNGC 4 cut(s) 123, 520, 733, 922
Sau3AI GATC 4 cut(s) 22, 116, 342, 685
Sau96I GGNCC 2 cut(s) 809, 937
SchI GAGTC 2 cut(s) 463, 962
ScrFI CCNGG 3 cut(s) 248, 539, 633
SduI GDGCHC 4 cut(s) 492, 569, 723, 834
SfaNI GCATC 1 cut(s) 1049
SfcI CTRYAG 1 cut(s) 922
SfoI GGCGCC 1 cut(s) 6
SinI GGWCC 2 cut(s) 809, 937
SmiMI CAYNNNNRTG 1 cut(s) 593
Sse9I AATT 8 cut(s) 258, 311, 483, 646, 785, 1069, 1172, 1190
SsiI CCGC 3 cut(s) 123, 733, 851
SspDI GGCGCC 1 cut(s) 4
SspI AATATT 2 cut(s) 157, 372
SstI GAGCTC 1 cut(s) 492
StyD4I CCNGG 3 cut(s) 246, 537, 631
StyI CCWWGG 2 cut(s) 276, 904
TaaI ACNGT 2 cut(s) 320, 708
TaqI TCGA 2 cut(s) 563, 1035
TasI AATT 8 cut(s) 258, 311, 483, 646, 785, 1069, 1172, 1190
TatI WGTACW 1 cut(s) 499
TauI GCSGC 2 cut(s) 125, 735
TfiI GAWTC 4 cut(s) 68, 845, 1200, 1213
Tru1I TTAA 7 cut(s) 173, 357, 470, 825, 911, 1134, 1193
Tru9I TTAA 7 cut(s) 173, 357, 470, 825, 911, 1134, 1193
TscAI CASTG 1 cut(s) 133
TseI GCWGC 2 cut(s) 519, 921
TspDTI ATGAA 6 cut(s) 393, 1072, 1100, 1154, 1197, 1200
TspGWI ACGGA 1 cut(s) 698
TspRI CASTG 1 cut(s) 133
VneI GTGCAC 1 cut(s) 719
VpaK11BI GGWCC 2 cut(s) 809, 937
XapI RAATTY 3 cut(s) 311, 785, 1172
XcmI CCANNNNNNNNNTGG 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.