Rorug01G0324600

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000399
Physical Location & Seq
Forward (+)
44375420 .. 44378325
2906 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0324600.1

Sequence Viewer

Length: 636 bp
ATGACTTCTGAGGAGAATGATGAAAAACCACATAAACCAACTCCCAAGTTAAATGAGAGGATTCTTTCATCTTTGTCAAGGAGATCAGTTGCTGCTCATCCTTGGCACGATCTTGAAATTGGTCCTACAGCTCCACATATTTTCAATGTGGTTGTTGAGATTACAAAGGGAAGCAAAGTCAAATACGAACTTGACAAGAAGACAGGATTAATTAAGGTTGATCGGATTTTGTACTCGTCTGTGGTCTATCCTCATAACTATGGCTTCATCCCTCGCACCTTGTGTGAAGACAATGATCCACTTGATGTTCTAGTCCTCATGCAGGAACCTGTCCTTCCTGGTTGCTTTCTGCGAGCAAGAGCCATTGGAGTGATGCCTATGATTGACCAGGGAGAGAAAGATGATAAGATCATTGCAGTCTGTGCTGACGATCCAGAGTATACGCATTATACTGAACTCAATGACCTACCCCCTCACCGCCTTTCTGAAATCCGTCGCTTCTTTGAAGACTACAAGAAAAATGAGAACAAAGAGGTTGCAGTTAACGCCTTTTTGCCTGCCACATCCGCTCTTGAAGCTATCCAGTACTCCATGGATCTTTATGCTGAGTACATACTGCACACCTTAAGGCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box

Protein Analysis

211

Amino Acids

24.21

Weight (kDa)

5.63

Isoelectric Point (pI)

46.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyrophosphatase PF00719 50 - 201 1.3e-59 Inorganic pyrophosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000399)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 569
AccI GTMKAC 1 cut(s) 440
AciI CCGC 3 cut(s) 478, 567, 631
AclWI GGATC 3 cut(s) 290, 425, 603
AdeI CACNNNGTG 1 cut(s) 282
AfaI GTAC 3 cut(s) 233, 587, 611
AfiI CCNNNNNNNGG 2 cut(s) 322, 630
AflII CTTAAG 1 cut(s) 625
AgsI TTSAA 4 cut(s) 116, 145, 506, 575
AjnI CCWGG 2 cut(s) 337, 387
AluBI AGCT 2 cut(s) 131, 578
AluI AGCT 2 cut(s) 131, 578
AlwI GGATC 3 cut(s) 290, 425, 603
AlwNI CAGNNNCTG 1 cut(s) 92
ApeKI GCWGC 1 cut(s) 92
AseI ATTAAT 1 cut(s) 209
AspS9I GGNCC 1 cut(s) 122
AsuHPI GGTGA 1 cut(s) 467
AvaII GGWCC 1 cut(s) 122
BbsI GAAGAC 3 cut(s) 206, 294, 513
BbvI GCAGC 1 cut(s) 79
BciT130I CCWGG 2 cut(s) 339, 389
BfaI CTAG 1 cut(s) 311
BfmI CTRYAG 1 cut(s) 126
BfrI CTTAAG 1 cut(s) 625
BisI GCNGC 1 cut(s) 93
BlsI GCNGC 1 cut(s) 94
BmcAI AGTACT 1 cut(s) 587
Bme1390I CCNGG 2 cut(s) 339, 389
Bme18I GGWCC 1 cut(s) 122
BmgT120I GGNCC 1 cut(s) 122
BmiI GGNNCC 1 cut(s) 327
BmrFI CCNGG 2 cut(s) 339, 389
BmsI GCATC 1 cut(s) 363
BpiI GAAGAC 3 cut(s) 206, 294, 513
BsaJI CCNNGG 3 cut(s) 101, 388, 591
Bsc4I CCNNNNNNNGG 2 cut(s) 322, 630
Bse1I ACTGG 1 cut(s) 583
Bse3DI GCAATG 1 cut(s) 411
BseBI CCWGG 2 cut(s) 339, 389
BseDI CCNNGG 3 cut(s) 101, 388, 591
BseGI GGATG 3 cut(s) 97, 267, 563
BseLI CCNNNNNNNGG 2 cut(s) 322, 630
BseMI GCAATG 1 cut(s) 411
BseMII CTCAG 1 cut(s) 597
BseNI ACTGG 1 cut(s) 583
BseRI GAGGAG 1 cut(s) 26
BseXI GCAGC 1 cut(s) 79
BsgI GTGCAG 1 cut(s) 602
BslI CCNNNNNNNGG 2 cut(s) 322, 630
Bsp143I GATC 7 cut(s) 83, 109, 220, 295, 408, 430, 595
Bsp19I CCATGG 1 cut(s) 591
BspACI CCGC 3 cut(s) 478, 567, 631
BspCNI CTCAG 1 cut(s) 598
BspLI GGNNCC 1 cut(s) 327
BspPI GGATC 3 cut(s) 290, 425, 603
BspTI CTTAAG 1 cut(s) 625
BsrBI CCGCTC 1 cut(s) 569
BsrDI GCAATG 1 cut(s) 411
BsrI ACTGG 1 cut(s) 583
BssECI CCNNGG 3 cut(s) 101, 388, 591
BssMI GATC 7 cut(s) 83, 109, 220, 295, 408, 430, 595
BssNAI GTATAC 1 cut(s) 441
BssT1I CCWWGG 2 cut(s) 101, 591
Bst1107I GTATAC 1 cut(s) 441
Bst2UI CCWGG 2 cut(s) 339, 389
BstAFI CTTAAG 1 cut(s) 625
BstAPI GCANNNNNTGC 1 cut(s) 422
BstC8I GCNNGC 2 cut(s) 354, 558
BstDEI CTNAG 2 cut(s) 9, 606
BstDSI CCRYGG 1 cut(s) 591
BstENI CCTNNNNNAGG 1 cut(s) 320
BstF5I GGATG 3 cut(s) 97, 267, 563
BstKTI GATC 7 cut(s) 86, 112, 223, 298, 411, 433, 598
BstMBI GATC 7 cut(s) 83, 109, 220, 295, 408, 430, 595
BstMWI GCNNNNNNNGC 4 cut(s) 422, 545, 566, 575
BstNI CCWGG 2 cut(s) 339, 389
BstSCI CCNGG 2 cut(s) 337, 387
BstSFI CTRYAG 1 cut(s) 126
BstV1I GCAGC 1 cut(s) 79
BstV2I GAAGAC 3 cut(s) 206, 294, 513
BstX2I RGATCY 1 cut(s) 595
BstYI RGATCY 1 cut(s) 595
BstZ17I GTATAC 1 cut(s) 441
BtgI CCRYGG 1 cut(s) 591
BtsCI GGATG 3 cut(s) 97, 267, 563
Cac8I GCNNGC 2 cut(s) 354, 558
CaiI CAGNNNCTG 1 cut(s) 92
Cfr13I GGNCC 1 cut(s) 122
Csp6I GTAC 3 cut(s) 232, 586, 610
CviAII CATG 2 cut(s) 319, 592
CviJI RGCY 4 cut(s) 131, 264, 362, 578
CviKI_1 RGCY 4 cut(s) 131, 264, 362, 578
CviQI GTAC 3 cut(s) 232, 586, 610
DdeI CTNAG 2 cut(s) 9, 606
DpnI GATC 7 cut(s) 85, 111, 222, 297, 410, 432, 597
DpnII GATC 7 cut(s) 83, 109, 220, 295, 408, 430, 595
DraIII CACNNNGTG 1 cut(s) 282
Eco130I CCWWGG 2 cut(s) 101, 591
Eco47I GGWCC 1 cut(s) 122
EcoNI CCTNNNNNAGG 1 cut(s) 320
EcoRII CCWGG 2 cut(s) 337, 387
EcoT14I CCWWGG 2 cut(s) 101, 591
ErhI CCWWGG 2 cut(s) 101, 591
FaeI CATG 2 cut(s) 322, 595
FatI CATG 2 cut(s) 318, 591
FblI GTMKAC 1 cut(s) 440
Fnu4HI GCNGC 1 cut(s) 93
FokI GGATG 3 cut(s) 84, 254, 550
Fsp4HI GCNGC 1 cut(s) 93
FspBI CTAG 1 cut(s) 311
GluI GCNGC 1 cut(s) 93
Hin1II CATG 2 cut(s) 322, 595
HincII GTYRAC 1 cut(s) 544
HindII GTYRAC 1 cut(s) 544
HinfI GANTC 1 cut(s) 61
HpaI GTTAAC 1 cut(s) 544
HphI GGTGA 1 cut(s) 467
Hpy166II GTNNAC 2 cut(s) 441, 544
Hpy188I TCNGA 3 cut(s) 10, 225, 487
Hpy188III TCNNGA 3 cut(s) 113, 434, 572
Hpy8I GTNNAC 2 cut(s) 441, 544
Hpy99I CGWCG 1 cut(s) 498
HpyAV CCTTC 1 cut(s) 344
HpyCH4V TGCA 4 cut(s) 322, 416, 539, 619
HpyF10VI GCNNNNNNNGC 4 cut(s) 422, 545, 566, 575
HpyF3I CTNAG 2 cut(s) 9, 606
Hsp92II CATG 2 cut(s) 322, 595
KspAI GTTAAC 1 cut(s) 544
Kzo9I GATC 7 cut(s) 83, 109, 220, 295, 408, 430, 595
LmnI GCTCC 1 cut(s) 136
Lsp1109I GCAGC 1 cut(s) 79
LweI GCATC 1 cut(s) 363
MaeI CTAG 1 cut(s) 311
MalI GATC 7 cut(s) 85, 111, 222, 297, 410, 432, 597
MbiI CCGCTC 1 cut(s) 569
MboI GATC 7 cut(s) 83, 109, 220, 295, 408, 430, 595
MboII GAAGA 3 cut(s) 211, 299, 518
MflI RGATCY 1 cut(s) 595
MluCI AATT 2 cut(s) 117, 210
MnlI CCTC 7 cut(s) 4, 51, 261, 282, 326, 483, 526
MseI TTAA 5 cut(s) 50, 209, 213, 543, 626
MslI CAYNNNNRTG 2 cut(s) 258, 368
MspCI CTTAAG 1 cut(s) 625
MspR9I CCNGG 2 cut(s) 339, 389
MvaI CCWGG 2 cut(s) 339, 389
MwoI GCNNNNNNNGC 4 cut(s) 422, 545, 566, 575
NcoI CCATGG 1 cut(s) 591
NdeII GATC 7 cut(s) 83, 109, 220, 295, 408, 430, 595
NlaIII CATG 2 cut(s) 322, 595
NlaIV GGNNCC 1 cut(s) 327
PacI TTAATTAA 1 cut(s) 213
PfeI GAWTC 1 cut(s) 61
PkrI GCNGC 1 cut(s) 94
PshBI ATTAAT 1 cut(s) 209
Psp6I CCWGG 2 cut(s) 337, 387
PspGI CCWGG 2 cut(s) 337, 387
PspN4I GGNNCC 1 cut(s) 327
PspPI GGNCC 1 cut(s) 122
PstNI CAGNNNCTG 1 cut(s) 92
PsuI RGATCY 1 cut(s) 595
RsaI GTAC 3 cut(s) 233, 587, 611
RsaNI GTAC 3 cut(s) 232, 586, 610
RseI CAYNNNNRTG 2 cut(s) 258, 368
SaqAI TTAA 5 cut(s) 50, 209, 213, 543, 626
SatI GCNGC 1 cut(s) 93
Sau3AI GATC 7 cut(s) 83, 109, 220, 295, 408, 430, 595
Sau96I GGNCC 1 cut(s) 122
ScaI AGTACT 1 cut(s) 587
ScrFI CCNGG 2 cut(s) 339, 389
SetI ASST 8 cut(s) 133, 219, 281, 331, 468, 537, 580, 626
SfaNI GCATC 1 cut(s) 363
SfcI CTRYAG 1 cut(s) 126
SinI GGWCC 1 cut(s) 122
SmiMI CAYNNNNRTG 2 cut(s) 258, 368
SmlI CTYRAG 1 cut(s) 625
SmoI CTYRAG 1 cut(s) 625
Sse9I AATT 2 cut(s) 117, 210
SsiI CCGC 3 cut(s) 478, 567, 631
SspMI CTAG 1 cut(s) 311
StyD4I CCNGG 2 cut(s) 337, 387
StyI CCWWGG 2 cut(s) 101, 591
TasI AATT 2 cut(s) 117, 210
TatI WGTACW 3 cut(s) 231, 585, 609
TfiI GAWTC 1 cut(s) 61
Tru1I TTAA 5 cut(s) 50, 209, 213, 543, 626
Tru9I TTAA 5 cut(s) 50, 209, 213, 543, 626
TseI GCWGC 1 cut(s) 92
TspDTI ATGAA 3 cut(s) 36, 57, 256
TspGWI ACGGA 1 cut(s) 482
Vha464I CTTAAG 1 cut(s) 625
VpaK11BI GGWCC 1 cut(s) 122
VspI ATTAAT 1 cut(s) 209
XagI CCTNNNNNAGG 1 cut(s) 320
XmiI GTMKAC 1 cut(s) 440
XspI CTAG 1 cut(s) 311
ZrmI AGTACT 1 cut(s) 587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.