Rmu_sc0008789.1_g000004

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008789.1
OG0000399
Physical Location & Seq
Forward (+)
28580 .. 29218
639 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008789.1_g000004.1.cds

Sequence Viewer

Length: 639 bp
atggctaatcttcctcaagatcttattgtctccatcgctcaaagggtggtttccttggaggactttatatcctttcgcgcggtttgtaaatcctggagtttagctgccatcaaggaaaactttactagaacacatcaagttccatggcttatgccccctgagaataaaggtactactatccgtgagttttacgacctgaaaagggataagatttacaaacttgatcttccacaaactaaagacaaattgtgctattcatctctagggtggctgatgactgaatccatcaaaaactccaaggttaatctgttgcatccattaaaccatcagcaaattattgagcttcccgatgttcagatatctaagaactatgatcattaccaagaagtggaattgatatacttgttcaaagatttcaccataagaaaatttgtgttatcttcaagtccttcttccacgtcggattatgctgttttgattcttagttggaaaagattagcattttggagaccaggagaccaagactggacgacattagatgggcatgaaacaagatatgcgaatttatattattttgacattacttattataaggggcaattttatgctgtggttgaactgggcactgtttcagtctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box

Protein Analysis

212

Amino Acids

24.86

Weight (kDa)

6.96

Isoelectric Point (pI)

44.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000399)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 591
AccB7I CCANNNNNTGG 1 cut(s) 388
AccII CGCG 2 cut(s) 78, 80
AciI CCGC 1 cut(s) 80
AcsI RAATTY 2 cut(s) 428, 562
AfaI GTAC 1 cut(s) 172
AfiI CCNNNNNNNGG 2 cut(s) 202, 388
AgsI TTSAA 3 cut(s) 409, 444, 617
AjiI CACGTC 1 cut(s) 459
AjnI CCWGG 2 cut(s) 92, 511
AluBI AGCT 2 cut(s) 104, 343
AluI AGCT 2 cut(s) 104, 343
Alw26I GTCTC 3 cut(s) 34, 502, 510
ApeKI GCWGC 1 cut(s) 104
ApoI RAATTY 2 cut(s) 428, 562
AspLEI GCGC 1 cut(s) 80
AsuHPI GGTGA 1 cut(s) 409
BaeGI GKGCMC 1 cut(s) 626
BbvI GCAGC 1 cut(s) 91
BccI CCATC 5 cut(s) 41, 116, 293, 333, 533
BciT130I CCWGG 2 cut(s) 94, 513
BclI TGATCA 1 cut(s) 373
BcoDI GTCTC 3 cut(s) 34, 502, 510
BfaI CTAG 2 cut(s) 126, 263
BglII AGATCT 1 cut(s) 19
BisI GCNGC 1 cut(s) 105
BlsI GCNGC 1 cut(s) 106
Bme1390I CCNGG 2 cut(s) 94, 513
BmgBI CACGTC 1 cut(s) 459
BmrFI CCNGG 2 cut(s) 94, 513
BmrI ACTGGG 1 cut(s) 629
BmsI GCATC 1 cut(s) 322
BmuI ACTGGG 1 cut(s) 629
BpmI CTGGAG 1 cut(s) 115
BsaI GGTCTC 2 cut(s) 502, 510
BsaJI CCNNGG 3 cut(s) 54, 143, 297
Bsc4I CCNNNNNNNGG 2 cut(s) 202, 388
Bse1I ACTGG 2 cut(s) 530, 624
BseBI CCWGG 2 cut(s) 94, 513
BseDI CCNNGG 3 cut(s) 54, 143, 297
BseGI GGATG 1 cut(s) 313
BseLI CCNNNNNNNGG 2 cut(s) 202, 388
BseMII CTCAG 1 cut(s) 150
BseNI ACTGG 2 cut(s) 530, 624
BseSI GKGCMC 1 cut(s) 626
BseXI GCAGC 1 cut(s) 91
Bsh1236I CGCG 2 cut(s) 78, 80
BslI CCNNNNNNNGG 2 cut(s) 202, 388
BsmAI GTCTC 3 cut(s) 34, 502, 510
Bso31I GGTCTC 2 cut(s) 502, 510
Bsp1286I GDGCHC 1 cut(s) 626
Bsp143I GATC 3 cut(s) 19, 223, 373
Bsp19I CCATGG 1 cut(s) 143
BspACI CCGC 1 cut(s) 80
BspCNI CTCAG 1 cut(s) 151
BspFNI CGCG 2 cut(s) 78, 80
BspTNI GGTCTC 2 cut(s) 502, 510
BsrI ACTGG 2 cut(s) 530, 624
BssECI CCNNGG 3 cut(s) 54, 143, 297
BssMI GATC 3 cut(s) 19, 223, 373
BssT1I CCWWGG 3 cut(s) 54, 143, 297
Bst2UI CCWGG 2 cut(s) 94, 513
Bst4CI ACNGT 1 cut(s) 628
BstDEI CTNAG 3 cut(s) 159, 363, 482
BstDSI CCRYGG 1 cut(s) 143
BstF5I GGATG 1 cut(s) 313
BstFNI CGCG 2 cut(s) 78, 80
BstHHI GCGC 1 cut(s) 80
BstKTI GATC 3 cut(s) 22, 226, 376
BstMAI GTCTC 3 cut(s) 34, 502, 510
BstMBI GATC 3 cut(s) 19, 223, 373
BstNI CCWGG 2 cut(s) 94, 513
BstSCI CCNGG 2 cut(s) 92, 511
BstSLI GKGCMC 1 cut(s) 626
BstUI CGCG 2 cut(s) 78, 80
BstV1I GCAGC 1 cut(s) 91
BstX2I RGATCY 1 cut(s) 19
BstYI RGATCY 1 cut(s) 19
BtgI CCRYGG 1 cut(s) 143
BtgZI GCGATG 1 cut(s) 19
BtrI CACGTC 1 cut(s) 459
BtsCI GGATG 1 cut(s) 313
BtsIMutI CAGTG 1 cut(s) 624
CfoI GCGC 1 cut(s) 80
Csp6I GTAC 1 cut(s) 171
CviAII CATG 2 cut(s) 144, 545
CviJI RGCY 5 cut(s) 5, 104, 148, 271, 343
CviKI_1 RGCY 5 cut(s) 5, 104, 148, 271, 343
CviQI GTAC 1 cut(s) 171
DdeI CTNAG 3 cut(s) 159, 363, 482
DpnI GATC 3 cut(s) 21, 225, 375
DpnII GATC 3 cut(s) 19, 223, 373
Eco130I CCWWGG 3 cut(s) 54, 143, 297
Eco31I GGTCTC 2 cut(s) 502, 510
Eco32I GATATC 1 cut(s) 360
EcoRII CCWGG 2 cut(s) 92, 511
EcoRV GATATC 1 cut(s) 360
EcoT14I CCWWGG 3 cut(s) 54, 143, 297
ErhI CCWWGG 3 cut(s) 54, 143, 297
FaeI CATG 2 cut(s) 147, 548
FalI AAGNNNNNCTT 4 cut(s) 104, 136, 436, 468
FatI CATG 2 cut(s) 143, 544
FbaI TGATCA 1 cut(s) 373
Fnu4HI GCNGC 1 cut(s) 105
FokI GGATG 1 cut(s) 300
Fsp4HI GCNGC 1 cut(s) 105
FspBI CTAG 2 cut(s) 126, 263
GlaI GCGC 1 cut(s) 79
GluI GCNGC 1 cut(s) 105
GsuI CTGGAG 1 cut(s) 115
HhaI GCGC 1 cut(s) 80
Hin1II CATG 2 cut(s) 147, 548
Hin6I GCGC 1 cut(s) 78
HinP1I GCGC 1 cut(s) 78
HinfI GANTC 2 cut(s) 281, 478
HphI GGTGA 1 cut(s) 409
Hpy188I TCNGA 3 cut(s) 357, 463, 638
Hpy188III TCNNGA 2 cut(s) 17, 347
Hpy99I CGWCG 1 cut(s) 463
HpyAV CCTTC 1 cut(s) 459
HpyCH4III ACNGT 1 cut(s) 628
HpyCH4IV ACGT 1 cut(s) 458
HpyCH4V TGCA 1 cut(s) 313
HpyF3I CTNAG 3 cut(s) 159, 363, 482
HpySE526I ACGT 1 cut(s) 458
Hsp92II CATG 2 cut(s) 147, 548
HspAI GCGC 1 cut(s) 78
Ksp22I TGATCA 1 cut(s) 373
Kzo9I GATC 3 cut(s) 19, 223, 373
LpnPI CCDG 8 cut(s) 79, 106, 171, 209, 498, 511, 525, 605
Lsp1109I GCAGC 1 cut(s) 91
LweI GCATC 1 cut(s) 322
MaeI CTAG 2 cut(s) 126, 263
MaeII ACGT 1 cut(s) 458
MalI GATC 3 cut(s) 21, 225, 375
MboI GATC 3 cut(s) 19, 223, 373
MboII GAAGA 3 cut(s) 218, 432, 444
MflI RGATCY 1 cut(s) 19
MhlI GDGCHC 1 cut(s) 626
MluCI AATT 6 cut(s) 245, 333, 392, 428, 562, 599
MmeI TCCRAC 2 cut(s) 441, 467
MnlI CCTC 2 cut(s) 24, 52
MseI TTAA 2 cut(s) 303, 320
MspR9I CCNGG 2 cut(s) 94, 513
MvaI CCWGG 2 cut(s) 94, 513
MvnI CGCG 2 cut(s) 78, 80
NcoI CCATGG 1 cut(s) 143
NdeII GATC 3 cut(s) 19, 223, 373
NlaIII CATG 2 cut(s) 147, 548
PfeI GAWTC 2 cut(s) 281, 478
PflMI CCANNNNNTGG 1 cut(s) 388
PfoI TCCNGGA 1 cut(s) 92
PkrI GCNGC 1 cut(s) 106
PsiI TTATAA 1 cut(s) 591
Psp6I CCWGG 2 cut(s) 92, 511
PspGI CCWGG 2 cut(s) 92, 511
PsuI RGATCY 1 cut(s) 19
RsaI GTAC 1 cut(s) 172
RsaNI GTAC 1 cut(s) 171
SaqAI TTAA 2 cut(s) 303, 320
SatI GCNGC 1 cut(s) 105
Sau3AI GATC 3 cut(s) 19, 223, 373
ScrFI CCNGG 2 cut(s) 94, 513
SduI GDGCHC 1 cut(s) 626
SetI ASST 6 cut(s) 106, 172, 198, 303, 345, 461
SfaNI GCATC 1 cut(s) 322
SmlI CTYRAG 1 cut(s) 15
SmoI CTYRAG 1 cut(s) 15
Sse9I AATT 6 cut(s) 245, 333, 392, 428, 562, 599
SsiI CCGC 1 cut(s) 80
SspMI CTAG 2 cut(s) 126, 263
StyD4I CCNGG 2 cut(s) 92, 511
StyI CCWWGG 3 cut(s) 54, 143, 297
TaaI ACNGT 1 cut(s) 628
TaiI ACGT 1 cut(s) 461
TasI AATT 6 cut(s) 245, 333, 392, 428, 562, 599
TfiI GAWTC 2 cut(s) 281, 478
Tru1I TTAA 2 cut(s) 303, 320
Tru9I TTAA 2 cut(s) 303, 320
TscAI CASTG 1 cut(s) 631
TseI GCWGC 1 cut(s) 104
TspDTI ATGAA 2 cut(s) 246, 561
TspGWI ACGGA 1 cut(s) 170
TspRI CASTG 1 cut(s) 631
Van91I CCANNNNNTGG 1 cut(s) 388
XapI RAATTY 2 cut(s) 428, 562
XspI CTAG 2 cut(s) 126, 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.