Rw6G028110

F-box protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Reverse (-)
52025205 .. 52026512
1308 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G028110.1

Sequence Viewer

Length: 1200 bp
ATGGATGATCAGAAAAGACCACGGGAGTCAAACTCTTCAGTCCTTCTAGTTTACCAGAGAAAAAGAAGAGTAATTTCGATGGCGCCCAACTGGTCGTACGATCTTCCCGAAGAGCTTATCATCTCTGTTGCCAAACGGCTGACAGGTTCCTTGCAGGATTTTATTTTTTTCGGTGCAGTTTGCAAATCATGGAGATCAGGCGCCACTGAGGTAAAGGAGAAAAACCCTAATAATATTGCATTTAGATTATTAACACACCAAGTTCCTCTCCTTTTGCTTCCACTTTCTTATTGGCAACGGCCTCCTCCCATCTTGGTCCGTAACCCGGTTCCTAAAATTATCAGGCCGCCTTTCAAGGACAAGACTGAGGGTTTGAATGAGGCAGTTGAGTTTTACAGTCTGAAGGGAAAAGGGTGTGAATGGAGTCTTGTGCATCCTTTAAATCATACCAAAGTTGATCTCCCAGATGTACGGGGGTCTTTGCCAGGCAGCGTTGTTTCTGGTTTCCGGTTAGGGAAGTTTGCCTTATCTTCGAGCCCTTCTTGGACATCGGATTACATAGTCATGTTTCAATCAGGTCATAGATTTGGTTTTTGCAGGCCAGGGCTAGGTGAAAATTGGAAATGCATAGTATCATGGAGAGATTTAATAATGGATCTAAGTTATTATAAAGGACAGTTCTATTTCGTGCACCTTTCTAGCCGCATTTCAGTTTTTGATATTGACAAAGAAGAAATCAGGCTTGTTGCTCCAGAATTTCCAGAGGAACAACTTTTAGGTCCTAATGTGCGTATTAAAGAGCACTATTTAGTGGAATCAGCGGGGGTTCTTTTGGTGGTTCTGTTGACTACCACAGCCACCAAGTGTAAAGACCAAGGATTAACATTTGGCTGCAGGGTTTTTGAAGTCCCATTTACAAACAGCAAATCGTGGTCGGACTCGGAGGTTAGGAGCTTGGGGAACAGAACCATTTTCCTAAGTAAATGTAGTTCTTCCTTCTCAATCGAGGCATCAGACTATTCTGGATCATGTAAGCCCAATTCCATCTACTTCATGAATAATAAGATAGTCCTTCCGAGACAAAGCAGAGATATGGGTGTTTTTAATATGAAGGATAGGACAATCACCCGACACGTTGACAAATTCTTCAATTATGAAGAATCAAGAGGATTCCATTTATGGGTTCAACCGAGTTTGTAA

Protein Analysis

399

Amino Acids

45.69

Weight (kDa)

9.27

Isoelectric Point (pI)

45.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 140 - 369 3.1e-38 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000399)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 669
AccB1I GGYRCC 2 cut(s) 82, 200
AciI CCGC 3 cut(s) 347, 703, 821
AclWI GGATC 2 cut(s) 663, 1033
AcsI RAATTY 2 cut(s) 755, 1142
AcuI CTGAAG 2 cut(s) 21, 422
AcyI GRCGYC 2 cut(s) 83, 201
AdeI CACNNNGTG 1 cut(s) 864
AfaI GTAC 2 cut(s) 98, 471
AfiI CCNNNNNNNGG 3 cut(s) 325, 608, 1180
AflIII ACRYGT 1 cut(s) 1132
AgsI TTSAA 6 cut(s) 355, 376, 572, 905, 1150, 1187
AjnI CCWGG 2 cut(s) 484, 601
AluBI AGCT 2 cut(s) 115, 954
AluI AGCT 2 cut(s) 115, 954
Alw21I GWGCWC 2 cut(s) 693, 804
Alw26I GTCTC 1 cut(s) 1072
Alw44I GTGCAC 1 cut(s) 689
AlwI GGATC 2 cut(s) 663, 1033
AoxI GGCC 3 cut(s) 299, 344, 599
ApaLI GTGCAC 1 cut(s) 689
ApeKI GCWGC 2 cut(s) 489, 891
ApoI RAATTY 2 cut(s) 755, 1142
ArsI GACNNNNNNTTYG 2 cut(s) 355, 387
AspLEI GCGC 2 cut(s) 85, 203
AspS9I GGNCC 2 cut(s) 316, 779
AsuC2I CCSGG 1 cut(s) 326
AsuHPI GGTGA 2 cut(s) 623, 1117
AvaII GGWCC 2 cut(s) 316, 779
BaeGI GKGCMC 1 cut(s) 693
BanI GGYRCC 2 cut(s) 82, 200
BanII GRGCYC 1 cut(s) 539
Bbv12I GWGCWC 2 cut(s) 693, 804
BbvI GCAGC 2 cut(s) 501, 878
BccI CCATC 3 cut(s) 73, 317, 1052
BceAI ACGGC 2 cut(s) 152, 314
BciT130I CCWGG 2 cut(s) 486, 603
BclI TGATCA 1 cut(s) 7
BcnI CCSGG 1 cut(s) 326
BcoDI GTCTC 1 cut(s) 1072
BfaI CTAG 3 cut(s) 47, 608, 699
BfmI CTRYAG 1 cut(s) 892
BfoI RGCGCY 2 cut(s) 86, 204
BisI GCNGC 4 cut(s) 347, 490, 703, 892
BlsI GCNGC 4 cut(s) 348, 491, 704, 893
Bme1390I CCNGG 3 cut(s) 326, 486, 603
Bme18I GGWCC 2 cut(s) 316, 779
BmgT120I GGNCC 2 cut(s) 316, 779
BmiI GGNNCC 4 cut(s) 84, 148, 202, 330
BmrFI CCNGG 3 cut(s) 326, 486, 603
BmsI GCATC 2 cut(s) 442, 1019
BplI GAGNNNNNCTC 2 cut(s) 17, 49
BpmI CTGGAG 1 cut(s) 735
BpuMI CCSGG 1 cut(s) 326
BsaHI GRCGYC 2 cut(s) 83, 201
BsaJI CCNNGG 3 cut(s) 20, 602, 874
BsaWI WCCGGW 1 cut(s) 507
Bsc4I CCNNNNNNNGG 3 cut(s) 325, 608, 1180
Bse1I ACTGG 1 cut(s) 95
BseBI CCWGG 2 cut(s) 486, 603
BseDI CCNNGG 3 cut(s) 20, 602, 874
BseGI GGATG 2 cut(s) 10, 433
BseLI CCNNNNNNNGG 3 cut(s) 325, 608, 1180
BseMII CTCAG 2 cut(s) 198, 357
BseNI ACTGG 1 cut(s) 95
BseRI GAGGAG 1 cut(s) 294
BseSI GKGCMC 1 cut(s) 693
BseXI GCAGC 2 cut(s) 501, 878
BsgI GTGCAG 1 cut(s) 195
BshFI GGCC 3 cut(s) 301, 346, 601
BshNI GGYRCC 2 cut(s) 82, 200
BsiHKAI GWGCWC 2 cut(s) 693, 804
BsiSI CCGG 2 cut(s) 326, 508
BsiWI CGTACG 1 cut(s) 96
BslFI GGGAC 1 cut(s) 893
BslI CCNNNNNNNGG 3 cut(s) 325, 608, 1180
BsmAI GTCTC 1 cut(s) 1072
BsmFI GGGAC 1 cut(s) 893
BsnI GGCC 3 cut(s) 301, 346, 601
Bsp1286I GDGCHC 3 cut(s) 539, 693, 804
Bsp143I GATC 6 cut(s) 7, 100, 194, 457, 655, 1025
BspACI CCGC 3 cut(s) 347, 703, 821
BspANI GGCC 3 cut(s) 301, 346, 601
BspCNI CTCAG 2 cut(s) 199, 358
BspHI TCATGA 1 cut(s) 1053
BspLI GGNNCC 4 cut(s) 84, 148, 202, 330
BspMAI CTGCAG 1 cut(s) 896
BspPI GGATC 2 cut(s) 663, 1033
BspQI GCTCTTC 1 cut(s) 105
BspT107I GGYRCC 2 cut(s) 82, 200
BsrI ACTGG 1 cut(s) 95
BssECI CCNNGG 3 cut(s) 20, 602, 874
BssMI GATC 6 cut(s) 7, 100, 194, 457, 655, 1025
BssNI GRCGYC 2 cut(s) 83, 201
BssT1I CCWWGG 1 cut(s) 874
Bst2UI CCWGG 2 cut(s) 486, 603
Bst4CI ACNGT 2 cut(s) 398, 678
Bst6I CTCTTC 3 cut(s) 40, 61, 105
BstACI GRCGYC 2 cut(s) 83, 201
BstC8I GCNNGC 1 cut(s) 599
BstDEI CTNAG 4 cut(s) 207, 366, 659, 977
BstDSI CCRYGG 1 cut(s) 20
BstF5I GGATG 2 cut(s) 10, 433
BstH2I RGCGCY 2 cut(s) 86, 204
BstHHI GCGC 2 cut(s) 85, 203
BstKTI GATC 6 cut(s) 10, 103, 197, 460, 658, 1028
BstMAI GTCTC 1 cut(s) 1072
BstMBI GATC 6 cut(s) 7, 100, 194, 457, 655, 1025
BstNI CCWGG 2 cut(s) 486, 603
BstSCI CCNGG 3 cut(s) 324, 484, 601
BstSFI CTRYAG 1 cut(s) 892
BstSLI GKGCMC 1 cut(s) 693
BstV1I GCAGC 2 cut(s) 501, 878
BstX2I RGATCY 1 cut(s) 655
BstYI RGATCY 1 cut(s) 655
BsuRI GGCC 3 cut(s) 301, 346, 601
BtgI CCRYGG 1 cut(s) 20
BtsCI GGATG 2 cut(s) 10, 433
BtsIMutI CAGTG 1 cut(s) 204
Cac8I GCNNGC 1 cut(s) 599
CciI TCATGA 1 cut(s) 1053
CfoI GCGC 2 cut(s) 85, 203
Cfr13I GGNCC 2 cut(s) 316, 779
Csp6I GTAC 2 cut(s) 97, 470
CviAII CATG 5 cut(s) 189, 565, 636, 1029, 1054
CviQI GTAC 2 cut(s) 97, 470
DdeI CTNAG 4 cut(s) 207, 366, 659, 977
DinI GGCGCC 2 cut(s) 84, 202
DpnI GATC 6 cut(s) 9, 102, 196, 459, 657, 1027
DpnII GATC 6 cut(s) 7, 100, 194, 457, 655, 1025
DraI TTTAAA 1 cut(s) 441
DraIII CACNNNGTG 1 cut(s) 864
Eam1104I CTCTTC 3 cut(s) 40, 61, 105
EarI CTCTTC 3 cut(s) 40, 61, 105
Eco130I CCWWGG 1 cut(s) 874
Eco24I GRGCYC 1 cut(s) 539
Eco47I GGWCC 2 cut(s) 316, 779
Eco57I CTGAAG 2 cut(s) 21, 422
EcoO109I RGGNCCY 1 cut(s) 779
EcoRII CCWGG 2 cut(s) 484, 601
EcoT14I CCWWGG 1 cut(s) 874
EcoT22I ATGCAT 1 cut(s) 629
EcoT38I GRGCYC 1 cut(s) 539
EgeI GGCGCC 2 cut(s) 84, 202
EheI GGCGCC 2 cut(s) 84, 202
ErhI CCWWGG 1 cut(s) 874
FaeI CATG 5 cut(s) 192, 568, 639, 1032, 1057
FalI AAGNNNNNCTT 2 cut(s) 509, 541
FaqI GGGAC 1 cut(s) 893
FatI CATG 5 cut(s) 188, 564, 635, 1028, 1053
FauI CCCGC 1 cut(s) 814
FbaI TGATCA 1 cut(s) 7
Fnu4HI GCNGC 4 cut(s) 347, 490, 703, 892
FokI GGATG 2 cut(s) 17, 420
FriOI GRGCYC 1 cut(s) 539
Fsp4HI GCNGC 4 cut(s) 347, 490, 703, 892
FspBI CTAG 3 cut(s) 47, 608, 699
GlaI GCGC 2 cut(s) 84, 202
GluI GCNGC 4 cut(s) 347, 490, 703, 892
GsuI CTGGAG 1 cut(s) 735
HaeII RGCGCY 2 cut(s) 86, 204
HaeIII GGCC 3 cut(s) 301, 346, 601
HapII CCGG 2 cut(s) 326, 508
HhaI GCGC 2 cut(s) 85, 203
Hin1I GRCGYC 2 cut(s) 83, 201
Hin1II CATG 5 cut(s) 192, 568, 639, 1032, 1057
Hin6I GCGC 2 cut(s) 83, 201
HinP1I GCGC 2 cut(s) 83, 201
HincII GTYRAC 2 cut(s) 846, 1138
HindII GTYRAC 2 cut(s) 846, 1138
HinfI GANTC 6 cut(s) 26, 424, 815, 938, 1160, 1170
HpaII CCGG 2 cut(s) 326, 508
HphI GGTGA 2 cut(s) 623, 1117
Hpy166II GTNNAC 4 cut(s) 52, 691, 846, 1138
Hpy188I TCNGA 7 cut(s) 12, 402, 553, 937, 943, 1015, 1077
Hpy188III TCNNGA 6 cut(s) 107, 752, 761, 1023, 1054, 1164
Hpy8I GTNNAC 4 cut(s) 52, 691, 846, 1138
HpyAV CCTTC 6 cut(s) 53, 397, 549, 1006, 1082, 1105
HpyCH4III ACNGT 2 cut(s) 398, 678
HpyCH4IV ACGT 1 cut(s) 1134
HpyCH4V TGCA 9 cut(s) 154, 176, 183, 239, 433, 597, 627, 691, 894
HpyF3I CTNAG 4 cut(s) 207, 366, 659, 977
HpySE526I ACGT 1 cut(s) 1134
Hsp92I GRCGYC 2 cut(s) 83, 201
Hsp92II CATG 5 cut(s) 192, 568, 639, 1032, 1057
HspAI GCGC 2 cut(s) 83, 201
KasI GGCGCC 2 cut(s) 82, 200
Ksp22I TGATCA 1 cut(s) 7
Kzo9I GATC 6 cut(s) 7, 100, 194, 457, 655, 1025
LguI GCTCTTC 1 cut(s) 105
LmnI GCTCC 2 cut(s) 754, 951
Lsp1109I GCAGC 2 cut(s) 501, 878
LweI GCATC 2 cut(s) 442, 1019
MaeI CTAG 3 cut(s) 47, 608, 699
MaeII ACGT 1 cut(s) 1134
MaeIII GTNAC 1 cut(s) 320
MalI GATC 6 cut(s) 9, 102, 196, 459, 657, 1027
MboI GATC 6 cut(s) 7, 100, 194, 457, 655, 1025
MboII GAAGA 9 cut(s) 27, 78, 95, 122, 522, 743, 984, 1138, 1169
MflI RGATCY 1 cut(s) 655
MhlI GDGCHC 3 cut(s) 539, 693, 804
MluCI AATT 7 cut(s) 72, 336, 616, 755, 1039, 1142, 1150
Mly113I GGCGCC 2 cut(s) 83, 201
MlyI GAGTC 3 cut(s) 35, 433, 932
MmeI TCCRAC 1 cut(s) 915
Mph1103I ATGCAT 1 cut(s) 629
MseI TTAA 6 cut(s) 251, 440, 647, 795, 881, 1104
MslI CAYNNNNRTG 1 cut(s) 563
MspA1I CMGCKG 1 cut(s) 821
MspI CCGG 2 cut(s) 326, 508
MspR9I CCNGG 3 cut(s) 326, 486, 603
MvaI CCWGG 2 cut(s) 486, 603
NarI GGCGCC 2 cut(s) 83, 201
NciI CCSGG 1 cut(s) 326
NdeII GATC 6 cut(s) 7, 100, 194, 457, 655, 1025
NlaIII CATG 5 cut(s) 192, 568, 639, 1032, 1057
NlaIV GGNNCC 4 cut(s) 84, 148, 202, 330
NsiI ATGCAT 1 cut(s) 629
PagI TCATGA 1 cut(s) 1053
PciSI GCTCTTC 1 cut(s) 105
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PfeI GAWTC 3 cut(s) 815, 1160, 1170
Pfl23II CGTACG 1 cut(s) 96
PkrI GCNGC 4 cut(s) 348, 491, 704, 893
PleI GAGTC 3 cut(s) 34, 432, 932
PluTI GGCGCC 2 cut(s) 86, 204
PpsI GAGTC 3 cut(s) 34, 432, 932
PpuMI RGGWCCY 1 cut(s) 779
PsiI TTATAA 1 cut(s) 669
Psp5II RGGWCCY 1 cut(s) 779
Psp6I CCWGG 2 cut(s) 484, 601
PspGI CCWGG 2 cut(s) 484, 601
PspLI CGTACG 1 cut(s) 96
PspN4I GGNNCC 4 cut(s) 84, 148, 202, 330
PspPI GGNCC 2 cut(s) 316, 779
PspPPI RGGWCCY 1 cut(s) 779
PsrI GAACNNNNNNTAC 2 cut(s) 973, 1005
PstI CTGCAG 1 cut(s) 896
PsuI RGATCY 1 cut(s) 655
RsaI GTAC 2 cut(s) 98, 471
RsaNI GTAC 2 cut(s) 97, 470
RseI CAYNNNNRTG 1 cut(s) 563
SapI GCTCTTC 1 cut(s) 105
SaqAI TTAA 6 cut(s) 251, 440, 647, 795, 881, 1104
SatI GCNGC 4 cut(s) 347, 490, 703, 892
Sau3AI GATC 6 cut(s) 7, 100, 194, 457, 655, 1025
Sau96I GGNCC 2 cut(s) 316, 779
SchI GAGTC 3 cut(s) 35, 433, 932
ScrFI CCNGG 3 cut(s) 326, 486, 603
SduI GDGCHC 3 cut(s) 539, 693, 804
SfaNI GCATC 2 cut(s) 442, 1019
SfcI CTRYAG 1 cut(s) 892
SfoI GGCGCC 2 cut(s) 84, 202
SinI GGWCC 2 cut(s) 316, 779
SmiMI CAYNNNNRTG 1 cut(s) 563
Sse9I AATT 7 cut(s) 72, 336, 616, 755, 1039, 1142, 1150
SsiI CCGC 3 cut(s) 347, 703, 821
SspDI GGCGCC 2 cut(s) 82, 200
SspI AATATT 1 cut(s) 235
SspMI CTAG 3 cut(s) 47, 608, 699
StyD4I CCNGG 3 cut(s) 324, 484, 601
StyI CCWWGG 1 cut(s) 874
TaaI ACNGT 2 cut(s) 398, 678
TaiI ACGT 1 cut(s) 1137
TaqI TCGA 3 cut(s) 77, 533, 1005
TasI AATT 7 cut(s) 72, 336, 616, 755, 1039, 1142, 1150
TauI GCSGC 2 cut(s) 349, 705
TfiI GAWTC 3 cut(s) 815, 1160, 1170
Tru1I TTAA 6 cut(s) 251, 440, 647, 795, 881, 1104
Tru9I TTAA 6 cut(s) 251, 440, 647, 795, 881, 1104
TscAI CASTG 1 cut(s) 211
TseI GCWGC 2 cut(s) 489, 891
TspDTI ATGAA 4 cut(s) 1042, 1070, 1124, 1170
TspGWI ACGGA 1 cut(s) 308
TspRI CASTG 1 cut(s) 211
VneI GTGCAC 1 cut(s) 689
VpaK11BI GGWCC 2 cut(s) 316, 779
XapI RAATTY 2 cut(s) 755, 1142
XcmI CCANNNNNNNNNTGG 1 cut(s) 288
XspI CTAG 3 cut(s) 47, 608, 699
Zsp2I ATGCAT 1 cut(s) 629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.