Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000399

Physical Location & Seq

Genomic Coordinates Forward (+)

6197892 .. 6199009

Gene Structure 1118 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00284630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGACTGAAAAAAAGAAAGAATGGCTATCCACTGGTCACGGATATTCCTTGAGATCTTGTTCTCTGCCTCAAAATTTCTTGCCAAGCTTCGCCAATCGGTTGATGGTTTCATTGGAGGATATTATTGCTTTCGGTGCAGTTTGCAAATCATGGAGTTCAGCGGCGATGGAGGCAAAGGAAAACTACCTTGCTAGTATTAGTACTAGTACTAGCACTGGATTGAGATTATTAGCAAAGCAAGCTCCTCTCCTAATGCTACCAGTGGTACTTGCCCTTCCACGACCAGGACTACTTGAAAATTATTGGACGAAGCTATCATTCCCAGAGTACAATTATATCAGGGATCTGACTTACTATCGGGGACAATTTTATGTGGTGAACTCTTTTGGCTGTGTTTCAGTCGTTTGCGATGTCGACGACCCTAATCGAGCAAAACTGAAGGCTGTTGCTCCAGAGATAAATCAAAAGGAACTACTTGATACTAGGAGGCCCCGCATTAAACAACAATACGTGGTGGAATGCGCCGGAGCTCTATTGCTTGTTTTGTGTCTCTACTCCGGTAAAAAGTACGAATCCACTACCGCCTGTAGGGTTTTCGAGGTCCCGTTTGATAACGGCAAATCATGGAAAGACTCTGAGGTCAAAGAATTTGGGGGGAATGGAGCAATCTTCTTGAGTCAAAGTAGTTCTTCCTTCTGTATTGAGGTCACTGATTATTCTGGATGTAAAGCCAATTGCATATACTTCATGAACAATAAGGTAGTCGATCTCTTCAGTAGTAAACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006109 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010565 GO:0019222 GO:0030656 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043255 GO:0045912 GO:0046137 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051193 GO:0051195 GO:0051196 GO:0051198 GO:0062012 GO:0062014 GO:0065007 GO:0080090 GO:2000082 GO:2000083

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

262

Amino Acids

29.36

Weight (kDa)

8.59

Isoelectric Point (pI)

38.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	90 - 251	3.4e-27	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000399)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica	MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica	Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata	RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora	Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa	Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha	Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana	Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	638
AccI	GTMKAC	1 cut(s)	414
AciI	CCGC	3 cut(s)	161, 493, 582
AclWI	GGATC	1 cut(s)	351
AcsI	RAATTY	2 cut(s)	73, 647
AcuI	CTGAAG	2 cut(s)	458, 757
AfaI	GTAC	5 cut(s)	202, 208, 267, 329, 569
AfiI	CCNNNNNNNGG	2 cut(s)	284, 588
AgsI	TTSAA	1 cut(s)	296
AhlI	ACTAGT	1 cut(s)	203
AjnI	CCWGG	1 cut(s)	283
AluBI	AGCT	4 cut(s)	87, 242, 313, 530
AluI	AGCT	4 cut(s)	87, 242, 313, 530
Alw21I	GWGCWC	1 cut(s)	532
Alw26I	GTCTC	1 cut(s)	554
AlwI	GGATC	1 cut(s)	351
AoxI	GGCC	1 cut(s)	488
ApoI	RAATTY	2 cut(s)	73, 647
AspLEI	GCGC	1 cut(s)	524
AspS9I	GGNCC	2 cut(s)	489, 601
AsuHPI	GGTGA	1 cut(s)	388
AvaII	GGWCC	1 cut(s)	601
BanII	GRGCYC	1 cut(s)	532
BarI	GAAGNNNNNNTAC	2 cut(s)	258, 290
Bbv12I	GWGCWC	1 cut(s)	532
BccI	CCATC	2 cut(s)	97, 160
BceAI	ACGGC	1 cut(s)	631
BciT130I	CCWGG	1 cut(s)	285
BcoDI	GTCTC	1 cut(s)	554
BcuI	ACTAGT	1 cut(s)	203
BfaI	CTAG	4 cut(s)	192, 204, 210, 483
BfmI	CTRYAG	1 cut(s)	586
BglII	AGATCT	1 cut(s)	53
BisI	GCNGC	1 cut(s)	162
BlsI	GCNGC	1 cut(s)	163
BmcAI	AGTACT	2 cut(s)	202, 208
Bme1390I	CCNGG	1 cut(s)	285
Bme18I	GGWCC	1 cut(s)	601
BmgT120I	GGNCC	2 cut(s)	489, 601
BmiI	GGNNCC	2 cut(s)	491, 603
BmrFI	CCNGG	1 cut(s)	285
BpmI	CTGGAG	1 cut(s)	435
BpuEI	CTTGAG	2 cut(s)	70, 694
BsaAI	YACGTR	1 cut(s)	511
BsaWI	WCCGGW	1 cut(s)	557
Bsc4I	CCNNNNNNNGG	2 cut(s)	284, 588
Bse1I	ACTGG	3 cut(s)	37, 220, 260
BseBI	CCWGG	1 cut(s)	285
BseGI	GGATG	1 cut(s)	728
BseLI	CCNNNNNNNGG	2 cut(s)	284, 588
BseMII	CTCAG	1 cut(s)	627
BseNI	ACTGG	3 cut(s)	37, 220, 260
BseRI	GAGGAG	1 cut(s)	234
BsgI	GTGCAG	1 cut(s)	156
BshFI	GGCC	1 cut(s)	490
BsiHKAI	GWGCWC	1 cut(s)	532
BsiSI	CCGG	2 cut(s)	525, 558
BslFI	GGGAC	2 cut(s)	375, 587
BslI	CCNNNNNNNGG	2 cut(s)	284, 588
BsmAI	GTCTC	1 cut(s)	554
BsmFI	GGGAC	2 cut(s)	375, 587
BsmI	GAATGC	1 cut(s)	524
BsnI	GGCC	1 cut(s)	490
Bsp1286I	GDGCHC	1 cut(s)	532
Bsp143I	GATC	3 cut(s)	53, 343, 766
BspACI	CCGC	3 cut(s)	161, 493, 582
BspANI	GGCC	1 cut(s)	490
BspCNI	CTCAG	1 cut(s)	628
BspHI	TCATGA	1 cut(s)	747
BspLI	GGNNCC	2 cut(s)	491, 603
BspPI	GGATC	1 cut(s)	351
BsrI	ACTGG	3 cut(s)	37, 220, 260
BssMI	GATC	3 cut(s)	53, 343, 766
Bst2UI	CCWGG	1 cut(s)	285
Bst6I	CTCTTC	1 cut(s)	776
BstBAI	YACGTR	1 cut(s)	511
BstC8I	GCNNGC	1 cut(s)	240
BstDEI	CTNAG	1 cut(s)	636
BstF5I	GGATG	1 cut(s)	728
BstHHI	GCGC	1 cut(s)	524
BstKTI	GATC	3 cut(s)	56, 346, 769
BstMAI	GTCTC	1 cut(s)	554
BstMBI	GATC	3 cut(s)	53, 343, 766
BstMWI	GCNNNNNNNGC	3 cut(s)	134, 170, 239
BstNI	CCWGG	1 cut(s)	285
BstSCI	CCNGG	1 cut(s)	283
BstSFI	CTRYAG	1 cut(s)	586
BstX2I	RGATCY	2 cut(s)	53, 343
BstYI	RGATCY	2 cut(s)	53, 343
BsuRI	GGCC	1 cut(s)	490
BtgZI	GCGATG	2 cut(s)	179, 423
BtsCI	GGATG	1 cut(s)	728
BtsIMutI	CAGTG	4 cut(s)	30, 213, 267, 708
Cac8I	GCNNGC	1 cut(s)	240
CciI	TCATGA	1 cut(s)	747
CfoI	GCGC	1 cut(s)	524
Cfr13I	GGNCC	2 cut(s)	489, 601
Csp6I	GTAC	5 cut(s)	201, 207, 266, 328, 568
CviAII	CATG	3 cut(s)	150, 624, 748
CviJI	RGCY	9 cut(s)	25, 87, 242, 313, 390, 443, 490, 530, 731
CviKI_1	RGCY	9 cut(s)	25, 87, 242, 313, 390, 443, 490, 530, 731
CviQI	GTAC	5 cut(s)	201, 207, 266, 328, 568
DdeI	CTNAG	1 cut(s)	636
DpnI	GATC	3 cut(s)	55, 345, 768
DpnII	GATC	3 cut(s)	53, 343, 766
DrdI	GACNNNNNNGTC	1 cut(s)	638
DseDI	GACNNNNNNGTC	1 cut(s)	638
Eam1104I	CTCTTC	1 cut(s)	776
EarI	CTCTTC	1 cut(s)	776
Ecl136II	GAGCTC	1 cut(s)	530
Eco24I	GRGCYC	1 cut(s)	532
Eco47I	GGWCC	1 cut(s)	601
Eco53kI	GAGCTC	1 cut(s)	530
Eco57I	CTGAAG	2 cut(s)	458, 757
EcoICRI	GAGCTC	1 cut(s)	530
EcoO109I	RGGNCCY	2 cut(s)	489, 601
EcoRII	CCWGG	1 cut(s)	283
EcoT38I	GRGCYC	1 cut(s)	532
FaeI	CATG	3 cut(s)	153, 627, 751
FaiI	YATR	7 cut(s)	151, 336, 372, 625, 740, 742, 749
FalI	AAGNNNNNCTT	2 cut(s)	673, 705
FaqI	GGGAC	2 cut(s)	375, 587
FatI	CATG	3 cut(s)	149, 623, 747
FauI	CCCGC	1 cut(s)	500
FblI	GTMKAC	1 cut(s)	414
Fnu4HI	GCNGC	1 cut(s)	162
FokI	GGATG	1 cut(s)	735
FriOI	GRGCYC	1 cut(s)	532
Fsp4HI	GCNGC	1 cut(s)	162
FspBI	CTAG	4 cut(s)	192, 204, 210, 483
GlaI	GCGC	1 cut(s)	523
GluI	GCNGC	1 cut(s)	162
GsuI	CTGGAG	1 cut(s)	435
HaeIII	GGCC	1 cut(s)	490
HapII	CCGG	2 cut(s)	525, 558
HhaI	GCGC	1 cut(s)	524
Hin1II	CATG	3 cut(s)	153, 627, 751
Hin6I	GCGC	1 cut(s)	522
HinP1I	GCGC	1 cut(s)	522
HincII	GTYRAC	1 cut(s)	415
HindII	GTYRAC	1 cut(s)	415
HindIII	AAGCTT	1 cut(s)	85
HinfI	GANTC	3 cut(s)	572, 632, 676
HpaII	CCGG	2 cut(s)	525, 558
HphI	GGTGA	1 cut(s)	388
Hpy166II	GTNNAC	3 cut(s)	379, 415, 782
Hpy188I	TCNGA	2 cut(s)	348, 637
Hpy188III	TCNNGA	4 cut(s)	452, 673, 720, 748
Hpy8I	GTNNAC	3 cut(s)	379, 415, 782
Hpy99I	CGWCG	1 cut(s)	419
HpyAV	CCTTC	3 cut(s)	284, 433, 703
HpyCH4IV	ACGT	1 cut(s)	510
HpyCH4V	TGCA	3 cut(s)	137, 144, 738
HpyF10VI	GCNNNNNNNGC	3 cut(s)	134, 170, 239
HpyF3I	CTNAG	1 cut(s)	636
HpySE526I	ACGT	1 cut(s)	510
Hsp92II	CATG	3 cut(s)	153, 627, 751
HspAI	GCGC	1 cut(s)	522
Kzo9I	GATC	3 cut(s)	53, 343, 766
LmnI	GCTCC	4 cut(s)	247, 454, 527, 662
MaeI	CTAG	4 cut(s)	192, 204, 210, 483
MaeII	ACGT	1 cut(s)	510
MaeIII	GTNAC	2 cut(s)	35, 706
MalI	GATC	3 cut(s)	55, 345, 768
MboI	GATC	3 cut(s)	53, 343, 766
MboII	GAAGA	3 cut(s)	661, 681, 763
MfeI	CAATTG	1 cut(s)	733
MflI	RGATCY	2 cut(s)	53, 343
MhlI	GDGCHC	1 cut(s)	532
MluCI	AATT	6 cut(s)	73, 298, 331, 365, 647, 733
MlyI	GAGTC	2 cut(s)	626, 685
MnlI	CCTC	8 cut(s)	78, 109, 163, 255, 480, 592, 631, 697
MseI	TTAA	1 cut(s)	498
MspA1I	CMGCKG	1 cut(s)	161
MspI	CCGG	2 cut(s)	525, 558
MspR9I	CCNGG	1 cut(s)	285
MunI	CAATTG	1 cut(s)	733
Mva1269I	GAATGC	1 cut(s)	524
MvaI	CCWGG	1 cut(s)	285
MwoI	GCNNNNNNNGC	3 cut(s)	134, 170, 239
NdeII	GATC	3 cut(s)	53, 343, 766
NlaIII	CATG	3 cut(s)	153, 627, 751
NlaIV	GGNNCC	2 cut(s)	491, 603
NmuCI	GTSAC	2 cut(s)	35, 706
PagI	TCATGA	1 cut(s)	747
PctI	GAATGC	1 cut(s)	524
PfeI	GAWTC	1 cut(s)	572
PkrI	GCNGC	1 cut(s)	163
PleI	GAGTC	2 cut(s)	626, 684
PpsI	GAGTC	2 cut(s)	626, 684
Ppu21I	YACGTR	1 cut(s)	511
PpuMI	RGGWCCY	1 cut(s)	601
Psp124BI	GAGCTC	1 cut(s)	532
Psp5II	RGGWCCY	1 cut(s)	601
Psp6I	CCWGG	1 cut(s)	283
PspGI	CCWGG	1 cut(s)	283
PspN4I	GGNNCC	2 cut(s)	491, 603
PspPI	GGNCC	2 cut(s)	489, 601
PspPPI	RGGWCCY	1 cut(s)	601
PsuI	RGATCY	2 cut(s)	53, 343
RsaI	GTAC	5 cut(s)	202, 208, 267, 329, 569
RsaNI	GTAC	5 cut(s)	201, 207, 266, 328, 568
SacI	GAGCTC	1 cut(s)	532
SalI	GTCGAC	1 cut(s)	413
SaqAI	TTAA	1 cut(s)	498
SatI	GCNGC	1 cut(s)	162
Sau3AI	GATC	3 cut(s)	53, 343, 766
Sau96I	GGNCC	2 cut(s)	489, 601
ScaI	AGTACT	2 cut(s)	202, 208
SchI	GAGTC	2 cut(s)	626, 685
ScrFI	CCNGG	1 cut(s)	285
SduI	GDGCHC	1 cut(s)	532
SfcI	CTRYAG	1 cut(s)	586
SinI	GGWCC	1 cut(s)	601
SmlI	CTYRAG	2 cut(s)	49, 673
SmoI	CTYRAG	2 cut(s)	49, 673
SpeI	ACTAGT	1 cut(s)	203
Sse9I	AATT	6 cut(s)	73, 298, 331, 365, 647, 733
SsiI	CCGC	3 cut(s)	161, 493, 582
SspMI	CTAG	4 cut(s)	192, 204, 210, 483
SstI	GAGCTC	1 cut(s)	532
StyD4I	CCNGG	1 cut(s)	283
TaiI	ACGT	1 cut(s)	513
TaqI	TCGA	4 cut(s)	414, 427, 597, 765
TasI	AATT	6 cut(s)	73, 298, 331, 365, 647, 733
TatI	WGTACW	3 cut(s)	200, 206, 327
TauI	GCSGC	1 cut(s)	164
TfiI	GAWTC	1 cut(s)	572
Tru1I	TTAA	1 cut(s)	498
Tru9I	TTAA	1 cut(s)	498
TscAI	CASTG	4 cut(s)	37, 220, 267, 715
TseFI	GTSAC	2 cut(s)	35, 706
Tsp45I	GTSAC	2 cut(s)	35, 706
TspDTI	ATGAA	3 cut(s)	99, 736, 764
TspGWI	ACGGA	1 cut(s)	54
TspRI	CASTG	4 cut(s)	37, 220, 267, 715
VpaK11BI	GGWCC	1 cut(s)	601
XapI	RAATTY	2 cut(s)	73, 647
XcmI	CCANNNNNNNNNTGG	1 cut(s)	100
XmiI	GTMKAC	1 cut(s)	414
XspI	CTAG	4 cut(s)	192, 204, 210, 483
ZrmI	AGTACT	2 cut(s)	202, 208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.