FvH4_5g23981

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000399
Physical Location & Seq
Reverse (-)
15267048 .. 15267995
948 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g23981.t1

Sequence Viewer

Length: 726 bp
ATGGCTAACTGGTCAGATTTATCCCTAGATCTTCTTGTGTCTATTGCCAATCGGATGGATGTAGTAGAGGACTTCATAGCCTTCGGCCTAGTTTGTAAACCGTGGAGATCGGCCGCCGCCAGGGAAAACTTCACCGGTGGATTGACACATCAAGTTCCATGGTTGCTTTTACATCCCACAAAGAACAGTAATGCAGGCAATAGCGTATTTGAGTTTTACAACATGAGGAAAGACCAGCTTTCTGGTCTGAACAATTTTGCCTTATCATCCAGCCCTTCTTCGACATCGGATTACATAGTCATGGCTATTTACGATATCGGTTGTAGGTTGGCATTTTGTAGACCGGGAGATGATGGATGGACCAAAGTCGCCAGAGAAAAACTGCTTTACTGTTACACCGATGTAACTTATTACAAGGGACAATTCCACGCAGTGGATACTACCGGACGTATTTTTGTTTGTGACATTGGAAAAGCAAAGACAAGGGTGATTATAGATAAGTCGGTTCCTAAGAGAAATAGAGATTGTTTTTATACGTACTATCTCGTTGAATCAAGAGGAGTCTTATTGGCAGTGCAACGAGTTTTCAGGGGAGAACCAGTTGAGTTTAGGGTTTTTGAGGTTCCCTTTAGTAATGGAAACTGGTCGGACTCAGAGCCTCCACCTCCTCTAGCTGCGAGTAGAATTGCATATACCATTCTTGCGGTGGAATTAAAGAAGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box

Protein Analysis

242

Amino Acids

27.18

Weight (kDa)

8.47

Isoelectric Point (pI)

28.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 83 - 216 1.5e-28 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000399)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 433
AccI GTMKAC 1 cut(s) 340
AciI CCGC 3 cut(s) 114, 117, 704
AcoI YGGCCR 1 cut(s) 111
AdeI CACNNNGTG 1 cut(s) 433
AfaI GTAC 1 cut(s) 539
AfiI CCNNNNNNNGG 2 cut(s) 120, 433
AgeI ACCGGT 1 cut(s) 134
AgsI TTSAA 1 cut(s) 551
AjnI CCWGG 1 cut(s) 119
AluBI AGCT 2 cut(s) 238, 674
AluI AGCT 2 cut(s) 238, 674
AoxI GGCC 2 cut(s) 85, 111
ApeKI GCWGC 1 cut(s) 674
AsiGI ACCGGT 1 cut(s) 134
AspS9I GGNCC 1 cut(s) 360
AsuC2I CCSGG 1 cut(s) 345
AsuHPI GGTGA 2 cut(s) 124, 499
AvaII GGWCC 1 cut(s) 360
BbvI GCAGC 1 cut(s) 661
BccI CCATC 3 cut(s) 49, 347, 351
BciT130I CCWGG 1 cut(s) 121
BciVI GTATCC 1 cut(s) 430
BcnI CCSGG 1 cut(s) 345
BfaI CTAG 3 cut(s) 26, 89, 671
BfuI GTATCC 1 cut(s) 430
BglII AGATCT 1 cut(s) 28
BisI GCNGC 3 cut(s) 114, 117, 675
BlsI GCNGC 3 cut(s) 115, 118, 676
Bme1390I CCNGG 2 cut(s) 121, 345
Bme18I GGWCC 1 cut(s) 360
BmgT120I GGNCC 1 cut(s) 360
BmiI GGNNCC 2 cut(s) 507, 624
BmrFI CCNGG 2 cut(s) 121, 345
BoxI GACNNNNGTC 1 cut(s) 365
BpuMI CCSGG 1 cut(s) 345
BsaAI YACGTR 1 cut(s) 537
BsaJI CCNNGG 3 cut(s) 101, 120, 158
BsaWI WCCGGW 2 cut(s) 134, 443
BsaXI ACNNNNNCTCC 2 cut(s) 585, 615
Bsc4I CCNNNNNNNGG 2 cut(s) 120, 433
Bse118I RCCGGY 1 cut(s) 134
Bse1I ACTGG 3 cut(s) 14, 599, 647
BseBI CCWGG 1 cut(s) 121
BseDI CCNNGG 3 cut(s) 101, 120, 158
BseGI GGATG 5 cut(s) 60, 64, 172, 266, 362
BseLI CCNNNNNNNGG 2 cut(s) 120, 433
BseMII CTCAG 1 cut(s) 666
BseNI ACTGG 3 cut(s) 14, 599, 647
BseRI GAGGAG 2 cut(s) 573, 657
BseX3I CGGCCG 1 cut(s) 111
BseXI GCAGC 1 cut(s) 661
Bsh1285I CGRYCG 1 cut(s) 114
BshFI GGCC 2 cut(s) 87, 113
BshTI ACCGGT 1 cut(s) 134
BsiEI CGRYCG 1 cut(s) 114
BsiSI CCGG 3 cut(s) 135, 344, 444
BslFI GGGAC 1 cut(s) 432
BslI CCNNNNNNNGG 2 cut(s) 120, 433
BsmFI GGGAC 1 cut(s) 432
BsnI GGCC 2 cut(s) 87, 113
Bsp143I GATC 2 cut(s) 28, 107
Bsp19I CCATGG 1 cut(s) 158
BspACI CCGC 3 cut(s) 114, 117, 704
BspANI GGCC 2 cut(s) 87, 113
BspCNI CTCAG 1 cut(s) 665
BspLI GGNNCC 2 cut(s) 507, 624
BsrFI RCCGGY 1 cut(s) 134
BsrI ACTGG 3 cut(s) 14, 599, 647
BssAI RCCGGY 1 cut(s) 134
BssECI CCNNGG 3 cut(s) 101, 120, 158
BssMI GATC 2 cut(s) 28, 107
BssT1I CCWWGG 1 cut(s) 158
Bst2UI CCWGG 1 cut(s) 121
Bst4CI ACNGT 3 cut(s) 102, 188, 392
BstBAI YACGTR 1 cut(s) 537
BstC8I GCNNGC 1 cut(s) 196
BstDEI CTNAG 2 cut(s) 510, 652
BstDSI CCRYGG 2 cut(s) 101, 158
BstF5I GGATG 5 cut(s) 60, 64, 172, 266, 362
BstKTI GATC 2 cut(s) 31, 110
BstMBI GATC 2 cut(s) 28, 107
BstMCI CGRYCG 1 cut(s) 114
BstNI CCWGG 1 cut(s) 121
BstPAI GACNNNNGTC 1 cut(s) 365
BstSCI CCNGG 2 cut(s) 119, 343
BstSNI TACGTA 1 cut(s) 537
BstV1I GCAGC 1 cut(s) 661
BstX2I RGATCY 1 cut(s) 28
BstXI CCANNNNNNTGG 2 cut(s) 55, 242
BstYI RGATCY 1 cut(s) 28
BstZI CGGCCG 1 cut(s) 111
BsuI GTATCC 1 cut(s) 430
BsuRI GGCC 2 cut(s) 87, 113
BtgI CCRYGG 2 cut(s) 101, 158
BtsCI GGATG 5 cut(s) 60, 64, 172, 266, 362
BtsI GCAGTG 2 cut(s) 438, 579
BtsIMutI CAGTG 2 cut(s) 438, 579
Cac8I GCNNGC 1 cut(s) 196
Cfr10I RCCGGY 1 cut(s) 134
Cfr13I GGNCC 1 cut(s) 360
Csp6I GTAC 1 cut(s) 538
CspAI ACCGGT 1 cut(s) 134
CviAII CATG 3 cut(s) 159, 223, 301
CviJI RGCY 9 cut(s) 5, 80, 87, 113, 238, 273, 305, 658, 674
CviKI_1 RGCY 9 cut(s) 5, 80, 87, 113, 238, 273, 305, 658, 674
CviQI GTAC 1 cut(s) 538
DdeI CTNAG 2 cut(s) 510, 652
DpnI GATC 2 cut(s) 30, 109
DpnII GATC 2 cut(s) 28, 107
DraIII CACNNNGTG 1 cut(s) 433
EaeI YGGCCR 1 cut(s) 111
EagI CGGCCG 1 cut(s) 111
EclXI CGGCCG 1 cut(s) 111
Eco105I TACGTA 1 cut(s) 537
Eco130I CCWWGG 1 cut(s) 158
Eco32I GATATC 1 cut(s) 316
Eco47I GGWCC 1 cut(s) 360
Eco52I CGGCCG 1 cut(s) 111
EcoRII CCWGG 1 cut(s) 119
EcoRV GATATC 1 cut(s) 316
EcoT14I CCWWGG 1 cut(s) 158
ErhI CCWWGG 1 cut(s) 158
FaeI CATG 3 cut(s) 162, 226, 304
FalI AAGNNNNNCTT 2 cut(s) 222, 254
FaqI GGGAC 1 cut(s) 432
FatI CATG 3 cut(s) 158, 222, 300
FblI GTMKAC 1 cut(s) 340
Fnu4HI GCNGC 3 cut(s) 114, 117, 675
FokI GGATG 5 cut(s) 67, 71, 159, 253, 369
Fsp4HI GCNGC 3 cut(s) 114, 117, 675
FspBI CTAG 3 cut(s) 26, 89, 671
GluI GCNGC 3 cut(s) 114, 117, 675
HaeIII GGCC 2 cut(s) 87, 113
HapII CCGG 3 cut(s) 135, 344, 444
Hin1II CATG 3 cut(s) 162, 226, 304
HinfI GANTC 3 cut(s) 551, 561, 650
HpaII CCGG 3 cut(s) 135, 344, 444
HphI GGTGA 2 cut(s) 124, 499
Hpy166II GTNNAC 2 cut(s) 98, 341
Hpy188I TCNGA 6 cut(s) 16, 54, 249, 289, 649, 655
Hpy188III TCNNGA 1 cut(s) 555
Hpy8I GTNNAC 2 cut(s) 98, 341
HpyAV CCTTC 3 cut(s) 91, 285, 712
HpyCH4III ACNGT 3 cut(s) 102, 188, 392
HpyCH4IV ACGT 2 cut(s) 448, 536
HpyCH4V TGCA 3 cut(s) 194, 577, 689
HpyF3I CTNAG 2 cut(s) 510, 652
HpySE526I ACGT 2 cut(s) 448, 536
Hsp92II CATG 3 cut(s) 162, 226, 304
Kzo9I GATC 2 cut(s) 28, 107
Lsp1109I GCAGC 1 cut(s) 661
MaeI CTAG 3 cut(s) 26, 89, 671
MaeII ACGT 2 cut(s) 448, 536
MaeIII GTNAC 3 cut(s) 392, 403, 461
MalI GATC 2 cut(s) 30, 109
MboI GATC 2 cut(s) 28, 107
MboII GAAGA 2 cut(s) 23, 270
MflI RGATCY 1 cut(s) 28
MluCI AATT 4 cut(s) 253, 422, 684, 710
MlyI GAGTC 2 cut(s) 570, 644
MmeI TCCRAC 1 cut(s) 627
MnlI CCTC 7 cut(s) 61, 219, 551, 613, 669, 675, 678
MseI TTAA 1 cut(s) 713
MslI CAYNNNNRTG 1 cut(s) 299
MspI CCGG 3 cut(s) 135, 344, 444
MspR9I CCNGG 2 cut(s) 121, 345
MvaI CCWGG 1 cut(s) 121
NciI CCSGG 1 cut(s) 345
NcoI CCATGG 1 cut(s) 158
NdeII GATC 2 cut(s) 28, 107
NlaIII CATG 3 cut(s) 162, 226, 304
NlaIV GGNNCC 2 cut(s) 507, 624
NmuCI GTSAC 1 cut(s) 461
PfeI GAWTC 1 cut(s) 551
PflMI CCANNNNNTGG 1 cut(s) 433
PinAI ACCGGT 1 cut(s) 134
PkrI GCNGC 3 cut(s) 115, 118, 676
PleI GAGTC 2 cut(s) 569, 644
PpsI GAGTC 2 cut(s) 569, 644
Ppu21I YACGTR 1 cut(s) 537
PshAI GACNNNNGTC 1 cut(s) 365
Psp6I CCWGG 1 cut(s) 119
PspGI CCWGG 1 cut(s) 119
PspN4I GGNNCC 2 cut(s) 507, 624
PspPI GGNCC 1 cut(s) 360
PsuI RGATCY 1 cut(s) 28
RsaI GTAC 1 cut(s) 539
RsaNI GTAC 1 cut(s) 538
RseI CAYNNNNRTG 1 cut(s) 299
SaqAI TTAA 1 cut(s) 713
SatI GCNGC 3 cut(s) 114, 117, 675
Sau3AI GATC 2 cut(s) 28, 107
Sau96I GGNCC 1 cut(s) 360
SchI GAGTC 2 cut(s) 570, 644
ScrFI CCNGG 2 cut(s) 121, 345
SetI ASST 7 cut(s) 240, 329, 451, 539, 624, 667, 676
SgrAI CRCCGGYG 1 cut(s) 134
SinI GGWCC 1 cut(s) 360
SmiMI CAYNNNNRTG 1 cut(s) 299
SnaBI TACGTA 1 cut(s) 537
Sse9I AATT 4 cut(s) 253, 422, 684, 710
SsiI CCGC 3 cut(s) 114, 117, 704
SspMI CTAG 3 cut(s) 26, 89, 671
StyD4I CCNGG 2 cut(s) 119, 343
StyI CCWWGG 1 cut(s) 158
TaaI ACNGT 3 cut(s) 102, 188, 392
TaiI ACGT 2 cut(s) 451, 539
TaqI TCGA 1 cut(s) 281
TasI AATT 4 cut(s) 253, 422, 684, 710
TauI GCSGC 2 cut(s) 116, 119
TfiI GAWTC 1 cut(s) 551
Tru1I TTAA 1 cut(s) 713
Tru9I TTAA 1 cut(s) 713
TscAI CASTG 2 cut(s) 438, 579
TseFI GTSAC 1 cut(s) 461
TseI GCWGC 1 cut(s) 674
Tsp45I GTSAC 1 cut(s) 461
TspDTI ATGAA 1 cut(s) 64
TspRI CASTG 2 cut(s) 438, 579
Van91I CCANNNNNTGG 1 cut(s) 433
VpaK11BI GGWCC 1 cut(s) 360
XcmI CCANNNNNNNNNTGG 1 cut(s) 703
XmiI GTMKAC 1 cut(s) 340
XspI CTAG 3 cut(s) 26, 89, 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.