Rw1G029600

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000399
Physical Location & Seq
Forward (+)
57300264 .. 57302605
2342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G029600.1

Sequence Viewer

Length: 867 bp
ATGGGAGCAACGATTTGTAATTATCGAAGAAAGAAGAACGCCATGACTACGGCAACTCATAAGGACTGGTCGAACCTTCATGATCATCAAGATCTCATTAACTGTTTCACAGAGCAAATAGTTTCCATGAAGGATTTCTATGCTTTTGGAGGACATAAAGTTCCAATCCTCTTTCTTCGAAAGGAGATCAATGCTCCCATCCGCAATTTTTACAGCTTGACAAAAGGTCAGATTTACCAACTTGATTTACCAGAAACTATGGGCAAGTTTTGCTATTCTTCTTTAGGATGGCTGCTGACTGTATCCGAAGATTTTTCCAAACTTCATCTTTTTAATCCATTAACCATGTCCAAATTGAGCTGCCTCCCGGGGTACAACAATGACAAATGGACTTTAGGGCCATTAATAATTTTAACGGATACAATTTATTATGGGGGCCAATTTTATGTCGTGGACTATCTTGGTAAGGTTTTTGTTTGGTTGGAGGAACTACTGTTCGGTCCTGAGATTCATTTTAAAGCACCATGTTTAGTGGAATCAGCAACAGGAACCCCGTTATTGGTTATCTCTTTATTTGAAGAAGGCAAAACTGAATCAATTGTTGGTTGTAGGGTATTCAAGGTGCCATTTGATGATGGCAATTTATGGGCAAAATCAGAAGTAAAGAATTTGGGGAATATAACCTTATTTTTGGGTGCAAACAATTCTTCATTCTCGATTGAGGCTTTAGATGATTCTACATGCAAAGCCAATTGTATTTATTTCTTAAATCGGAATCATAGCAACATACACTTTGAAGCATTTCCCGACTTTCAGTACAAAGGCAGATCATTAACATCACATTCATGGCTTCAACCTAGTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box

Protein Analysis

288

Amino Acids

32.84

Weight (kDa)

6.5

Isoelectric Point (pI)

42.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 70 - 123 6.9e-06 KIB1-4 beta-propeller
Beta-prop_KIB1-4 PF03478 137 - 260 1.3e-17 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000399)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 622
AciI CCGC 1 cut(s) 202
AcsI RAATTY 1 cut(s) 667
AfaI GTAC 2 cut(s) 374, 818
AfiI CCNNNNNNNGG 1 cut(s) 559
AgsI TTSAA 4 cut(s) 578, 619, 797, 854
AhdI GACNNNNNGTC 1 cut(s) 225
AjuI GAANNNNNNNTTGG 2 cut(s) 585, 617
AloI GAACNNNNNNTCC 4 cut(s) 144, 176, 479, 511
AluBI AGCT 2 cut(s) 216, 360
AluI AGCT 2 cut(s) 216, 360
Ama87I CYCGRG 1 cut(s) 367
AoxI GGCC 2 cut(s) 398, 436
ApeKI GCWGC 2 cut(s) 292, 360
ApoI RAATTY 1 cut(s) 667
AseI ATTAAT 1 cut(s) 404
Asp700I GAANNNNTTC 2 cut(s) 134, 801
AspS9I GGNCC 3 cut(s) 398, 436, 500
AsuC2I CCSGG 2 cut(s) 368, 369
AsuII TTCGAA 1 cut(s) 178
AvaI CYCGRG 1 cut(s) 367
AvaII GGWCC 1 cut(s) 500
BanI GGYRCC 1 cut(s) 622
BbvI GCAGC 2 cut(s) 279, 347
BccI CCATC 3 cut(s) 206, 282, 629
BceAI ACGGC 1 cut(s) 66
BciVI GTATCC 2 cut(s) 313, 412
BclI TGATCA 1 cut(s) 82
BcnI CCSGG 2 cut(s) 368, 369
BfaI CTAG 1 cut(s) 858
BfuI GTATCC 2 cut(s) 313, 412
BglII AGATCT 1 cut(s) 91
BisI GCNGC 2 cut(s) 293, 361
BlsI GCNGC 2 cut(s) 294, 362
Bme1390I CCNGG 2 cut(s) 368, 369
Bme18I GGWCC 1 cut(s) 500
BmeRI GACNNNNNGTC 1 cut(s) 225
BmeT110I CYCGRG 1 cut(s) 367
BmgT120I GGNCC 3 cut(s) 398, 436, 500
BmiI GGNNCC 3 cut(s) 437, 550, 624
BmrFI CCNGG 2 cut(s) 368, 369
Bpu14I TTCGAA 1 cut(s) 178
BpuMI CCSGG 2 cut(s) 368, 369
BsaJI CCNNGG 2 cut(s) 367, 368
Bsc4I CCNNNNNNNGG 1 cut(s) 559
Bse1I ACTGG 1 cut(s) 71
BseDI CCNNGG 2 cut(s) 367, 368
BseGI GGATG 2 cut(s) 198, 293
BseLI CCNNNNNNNGG 1 cut(s) 559
BseMII CTCAG 1 cut(s) 495
BseNI ACTGG 1 cut(s) 71
BseXI GCAGC 2 cut(s) 279, 347
BshFI GGCC 2 cut(s) 400, 438
BshNI GGYRCC 1 cut(s) 622
BsiHKCI CYCGRG 1 cut(s) 367
BsiSI CCGG 1 cut(s) 368
BslI CCNNNNNNNGG 1 cut(s) 559
BsnI GGCC 2 cut(s) 400, 438
BsoBI CYCGRG 1 cut(s) 367
Bsp119I TTCGAA 1 cut(s) 178
Bsp143I GATC 4 cut(s) 82, 91, 186, 827
BspACI CCGC 1 cut(s) 202
BspANI GGCC 2 cut(s) 400, 438
BspCNI CTCAG 1 cut(s) 496
BspHI TCATGA 1 cut(s) 79
BspLI GGNNCC 3 cut(s) 437, 550, 624
BspT104I TTCGAA 1 cut(s) 178
BspT107I GGYRCC 1 cut(s) 622
BsrI ACTGG 1 cut(s) 71
BssECI CCNNGG 2 cut(s) 367, 368
BssMI GATC 4 cut(s) 82, 91, 186, 827
Bst4CI ACNGT 3 cut(s) 104, 301, 495
BstAPI GCANNNNNTGC 1 cut(s) 270
BstBI TTCGAA 1 cut(s) 178
BstDEI CTNAG 1 cut(s) 504
BstF5I GGATG 2 cut(s) 198, 293
BstKTI GATC 4 cut(s) 85, 94, 189, 830
BstMBI GATC 4 cut(s) 82, 91, 186, 827
BstMWI GCNNNNNNNGC 1 cut(s) 270
BstNSI RCATGY 1 cut(s) 744
BstSCI CCNGG 2 cut(s) 366, 367
BstV1I GCAGC 2 cut(s) 279, 347
BstX2I RGATCY 1 cut(s) 91
BstYI RGATCY 1 cut(s) 91
BsuI GTATCC 2 cut(s) 313, 412
BsuRI GGCC 2 cut(s) 400, 438
BtsCI GGATG 2 cut(s) 198, 293
CciI TCATGA 1 cut(s) 79
Cfr13I GGNCC 3 cut(s) 398, 436, 500
Cfr9I CCCGGG 1 cut(s) 367
Csp6I GTAC 2 cut(s) 373, 817
CviAII CATG 7 cut(s) 43, 80, 127, 346, 525, 741, 846
CviJI RGCY 8 cut(s) 216, 292, 360, 400, 438, 725, 749, 850
CviKI_1 RGCY 8 cut(s) 216, 292, 360, 400, 438, 725, 749, 850
CviQI GTAC 2 cut(s) 373, 817
DdeI CTNAG 1 cut(s) 504
DpnI GATC 4 cut(s) 84, 93, 188, 829
DpnII GATC 4 cut(s) 82, 91, 186, 827
DraI TTTAAA 1 cut(s) 517
DriI GACNNNNNGTC 1 cut(s) 225
Eam1105I GACNNNNNGTC 1 cut(s) 225
Eco47I GGWCC 1 cut(s) 500
Eco88I CYCGRG 1 cut(s) 367
FaeI CATG 7 cut(s) 46, 83, 130, 349, 528, 744, 849
FatI CATG 7 cut(s) 42, 79, 126, 345, 524, 740, 845
FbaI TGATCA 1 cut(s) 82
Fnu4HI GCNGC 2 cut(s) 293, 361
FokI GGATG 2 cut(s) 185, 300
Fsp4HI GCNGC 2 cut(s) 293, 361
FspBI CTAG 1 cut(s) 858
GluI GCNGC 2 cut(s) 293, 361
HaeIII GGCC 2 cut(s) 400, 438
HapII CCGG 1 cut(s) 368
Hin1II CATG 7 cut(s) 46, 83, 130, 349, 528, 744, 849
HinfI GANTC 5 cut(s) 508, 536, 593, 734, 775
HpaII CCGG 1 cut(s) 368
Hpy166II GTNNAC 1 cut(s) 454
Hpy188I TCNGA 4 cut(s) 231, 307, 658, 774
Hpy188III TCNNGA 5 cut(s) 80, 89, 503, 715, 806
Hpy8I GTNNAC 1 cut(s) 454
HpyAV CCTTC 3 cut(s) 86, 124, 575
HpyCH4III ACNGT 3 cut(s) 104, 301, 495
HpyCH4V TGCA 2 cut(s) 698, 744
HpyF10VI GCNNNNNNNGC 1 cut(s) 270
HpyF3I CTNAG 1 cut(s) 504
Hsp92II CATG 7 cut(s) 46, 83, 130, 349, 528, 744, 849
Ksp22I TGATCA 1 cut(s) 82
Kzo9I GATC 4 cut(s) 82, 91, 186, 827
LmnI GCTCC 2 cut(s) 5, 199
LpnPI CCDG 5 cut(s) 52, 264, 381, 516, 531
Lsp1109I GCAGC 2 cut(s) 279, 347
MaeI CTAG 1 cut(s) 858
MalI GATC 4 cut(s) 84, 93, 188, 829
MboI GATC 4 cut(s) 82, 91, 186, 827
MboII GAAGA 7 cut(s) 39, 46, 167, 270, 320, 590, 699
MfeI CAATTG 2 cut(s) 597, 751
MflI RGATCY 1 cut(s) 91
MmeI TCCRAC 1 cut(s) 462
MnlI CCTC 5 cut(s) 143, 179, 374, 478, 715
MroXI GAANNNNTTC 2 cut(s) 134, 801
MseI TTAA 8 cut(s) 99, 333, 341, 404, 413, 516, 767, 833
MslI CAYNNNNRTG 1 cut(s) 844
MspI CCGG 1 cut(s) 368
MspR9I CCNGG 2 cut(s) 368, 369
MunI CAATTG 2 cut(s) 597, 751
MwoI GCNNNNNNNGC 1 cut(s) 270
NciI CCSGG 2 cut(s) 368, 369
NdeII GATC 4 cut(s) 82, 91, 186, 827
NlaIII CATG 7 cut(s) 46, 83, 130, 349, 528, 744, 849
NlaIV GGNNCC 3 cut(s) 437, 550, 624
NspI RCATGY 1 cut(s) 744
NspV TTCGAA 1 cut(s) 178
PagI TCATGA 1 cut(s) 79
PdmI GAANNNNTTC 2 cut(s) 134, 801
PfeI GAWTC 5 cut(s) 508, 536, 593, 734, 775
PkrI GCNGC 2 cut(s) 294, 362
PshBI ATTAAT 1 cut(s) 404
PspN4I GGNNCC 3 cut(s) 437, 550, 624
PspPI GGNCC 3 cut(s) 398, 436, 500
PsuI RGATCY 1 cut(s) 91
RsaI GTAC 2 cut(s) 374, 818
RsaNI GTAC 2 cut(s) 373, 817
RseI CAYNNNNRTG 1 cut(s) 844
SaqAI TTAA 8 cut(s) 99, 333, 341, 404, 413, 516, 767, 833
SatI GCNGC 2 cut(s) 293, 361
Sau3AI GATC 4 cut(s) 82, 91, 186, 827
Sau96I GGNCC 3 cut(s) 398, 436, 500
ScrFI CCNGG 2 cut(s) 368, 369
SetI ASST 8 cut(s) 78, 218, 229, 362, 471, 624, 686, 859
SfuI TTCGAA 1 cut(s) 178
SinI GGWCC 1 cut(s) 500
SmaI CCCGGG 1 cut(s) 369
SmiMI CAYNNNNRTG 1 cut(s) 844
SsiI CCGC 1 cut(s) 202
SspMI CTAG 1 cut(s) 858
StyD4I CCNGG 2 cut(s) 366, 367
TaaI ACNGT 3 cut(s) 104, 301, 495
TaqI TCGA 4 cut(s) 25, 71, 178, 716
TaqII GACCGA 1 cut(s) 488
TatI WGTACW 1 cut(s) 816
TfiI GAWTC 5 cut(s) 508, 536, 593, 734, 775
Tru1I TTAA 8 cut(s) 99, 333, 341, 404, 413, 516, 767, 833
Tru9I TTAA 8 cut(s) 99, 333, 341, 404, 413, 516, 767, 833
TseI GCWGC 2 cut(s) 292, 360
TspDTI ATGAA 6 cut(s) 68, 143, 314, 500, 699, 834
TspGWI ACGGA 1 cut(s) 431
TspMI CCCGGG 1 cut(s) 367
VpaK11BI GGWCC 1 cut(s) 500
VspI ATTAAT 1 cut(s) 404
XapI RAATTY 1 cut(s) 667
XceI RCATGY 1 cut(s) 744
XmaI CCCGGG 1 cut(s) 367
XmnI GAANNNNTTC 2 cut(s) 134, 801
XspI CTAG 1 cut(s) 858
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.