RLG00000003898

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000399
Physical Location & Seq
Reverse (-)
54071570 .. 54072709
1140 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003898

Sequence Viewer

Length: 1140 bp
ATGGAACTAAGGTCCAAAGAAGGCAAGCCTTCAATGGCTGACTGGTCTGATCTTCCCCAGGATCTTGTTGTGTGTATCTGCCAAAGGATGGATTCCATGCAAGACTTCATCACTTTCGGCGCAGTCTGTAAAACATGGAGTTCTGCCGCCACCAAAGATAACTTTACTCGTGGGTTTACACATCAAGTTCCACTGCTTATGATGGCAGATACAGAGGACAATATTAGACCTTTTCCCGGCCAGTGTTACAACCTCATAAAAGGTAAGGTTTCCAGACTTAATATACCAGAGACTATCACTCAACGTCGTCTAATTCCCTCGTGTAAGTCTTCTCTTGGATGGCTCATCACCGCCTCATCTAAATTTTTGACTTGTGATTCCAGACATATATATCTGTTGCATCCTTTCAAACATGAAGAAATTGTGCTGCCAACCTTTGAGTTTGAGTTTGGGTTGATAAAGAAGTTTGTCTTATCATCTAGTCCTTCTCTGACATCAGATTATACAGTCATAGTTTCTACTGGGTCCGAAAGAGAGTTCGCTTTCTGGAGACCGAAGGACAATGGATGGACTAAAATATCATCAGAACTAAATAATTGGGAATCAGAGACACGATCATATGATATAGCTTATTACAAAGGACAATTGTATATAGTCGAATGGGATGGCTGTGTGTTTGTTTGTGACGTTGATGACCCGAAGAAAGCAGCAGCAAAGTTGGTTGTTTCAGAGATGCCAAATAATCTAGTTTCTAATGATAGCGTACAGCAATTGTACCTGGTGGAATCAGGTGGCGCCTTACTGTTGGTTTTCCGGCTCAAGTACACTTCTCGAAATGGGTTTAGGGTTTTTGAGGTGCCACTTAGTACTGGCAATTGGTTGGACGCGAAGGAGGTAGAGAACTTGGGGAATCGAGCCTTGTTTTTGAGTTTAAACAATTCTTCATTCTCTATAGAGGTCTCAGACTACTCTGGGTGTAAGGCCAATTGCATATACTTTGCACGTCATCTTCTTTCTGAATGCACTCCGACCTGTACAGATCTGGGTATTTTTGGTATGAAAGATGGAGAGGTCGAACCATTCACACCGAAATCCTGTAGCGTTCAAAAACCATATGTATGGACTCAGTGGACTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box

Protein Analysis

380

Amino Acids

43.02

Weight (kDa)

5.69

Isoelectric Point (pI)

41.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 15 - 56 1.5e-06 F-box domain
Beta-prop_KIB1-4 PF03478 83 - 350 9.6e-54 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000399)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 794, 856
AccB7I CCANNNNNTGG 1 cut(s) 88
AccII CGCG 1 cut(s) 887
AciI CCGC 2 cut(s) 147, 351
AclWI GGATC 1 cut(s) 69
AcoI YGGCCR 1 cut(s) 238
AcsI RAATTY 1 cut(s) 362
AcyI GRCGYC 1 cut(s) 795
AfaI GTAC 5 cut(s) 765, 776, 824, 868, 1036
AfiI CCNNNNNNNGG 2 cut(s) 88, 236
AgsI TTSAA 3 cut(s) 33, 409, 1106
AjiI CACGTC 1 cut(s) 1004
AjnI CCWGG 2 cut(s) 57, 777
AluBI AGCT 1 cut(s) 629
AluI AGCT 1 cut(s) 629
Alw26I GTCTC 4 cut(s) 284, 544, 602, 964
AlwI GGATC 1 cut(s) 69
AoxI GGCC 2 cut(s) 238, 981
ApeKI GCWGC 3 cut(s) 427, 707, 710
ApoI RAATTY 1 cut(s) 362
AspLEI GCGC 2 cut(s) 122, 797
AspS9I GGNCC 2 cut(s) 12, 525
AsuC2I CCSGG 1 cut(s) 237
AsuHPI GGTGA 1 cut(s) 340
AvaII GGWCC 2 cut(s) 12, 525
BanI GGYRCC 2 cut(s) 794, 856
BauI CACGAG 2 cut(s) 168, 319
BbsI GAAGAC 1 cut(s) 321
BbvI GCAGC 3 cut(s) 414, 719, 722
BccI CCATC 6 cut(s) 82, 196, 333, 561, 659, 1058
BciT130I CCWGG 2 cut(s) 59, 779
BcnI CCSGG 1 cut(s) 237
BcoDI GTCTC 4 cut(s) 284, 544, 602, 964
BfaI CTAG 2 cut(s) 480, 746
BfmI CTRYAG 2 cut(s) 951, 1096
BfoI RGCGCY 1 cut(s) 798
BglII AGATCT 1 cut(s) 1039
BisI GCNGC 4 cut(s) 147, 428, 708, 711
BlsI GCNGC 4 cut(s) 148, 429, 709, 712
BmcAI AGTACT 1 cut(s) 868
Bme1390I CCNGG 3 cut(s) 59, 237, 779
Bme18I GGWCC 2 cut(s) 12, 525
BmgBI CACGTC 1 cut(s) 1004
BmgT120I GGNCC 2 cut(s) 12, 525
BmiI GGNNCC 3 cut(s) 526, 796, 858
BmrFI CCNGG 3 cut(s) 59, 237, 779
BmrI ACTGGG 1 cut(s) 531
BmsI GCATC 2 cut(s) 409, 723
BmuI ACTGGG 1 cut(s) 531
BpiI GAAGAC 1 cut(s) 321
BpmI CTGGAG 1 cut(s) 568
BpuEI CTTGAG 1 cut(s) 803
BpuMI CCSGG 1 cut(s) 237
BsaHI GRCGYC 1 cut(s) 795
BsaI GGTCTC 2 cut(s) 544, 964
BsaJI CCNNGG 1 cut(s) 57
Bsc4I CCNNNNNNNGG 2 cut(s) 88, 236
Bse1I ACTGG 4 cut(s) 47, 241, 526, 874
BseBI CCWGG 2 cut(s) 59, 779
BseDI CCNNGG 1 cut(s) 57
BseGI GGATG 5 cut(s) 93, 344, 400, 572, 670
BseLI CCNNNNNNNGG 2 cut(s) 88, 236
BseMII CTCAG 2 cut(s) 975, 1139
BseNI ACTGG 4 cut(s) 47, 241, 526, 874
BseXI GCAGC 3 cut(s) 414, 719, 722
Bsh1236I CGCG 1 cut(s) 887
BshFI GGCC 2 cut(s) 240, 983
BshNI GGYRCC 2 cut(s) 794, 856
BsiSI CCGG 2 cut(s) 237, 814
BslI CCNNNNNNNGG 2 cut(s) 88, 236
BsmAI GTCTC 4 cut(s) 284, 544, 602, 964
BsmI GAATGC 1 cut(s) 1025
BsnI GGCC 2 cut(s) 240, 983
Bso31I GGTCTC 2 cut(s) 544, 964
Bsp1407I TGTACA 1 cut(s) 1034
Bsp143I GATC 4 cut(s) 49, 61, 614, 1039
BspACI CCGC 2 cut(s) 147, 351
BspANI GGCC 2 cut(s) 240, 983
BspCNI CTCAG 2 cut(s) 974, 1138
BspFNI CGCG 1 cut(s) 887
BspLI GGNNCC 3 cut(s) 526, 796, 858
BspPI GGATC 1 cut(s) 69
BspT107I GGYRCC 2 cut(s) 794, 856
BspTNI GGTCTC 2 cut(s) 544, 964
BsrGI TGTACA 1 cut(s) 1034
BsrI ACTGG 4 cut(s) 47, 241, 526, 874
BssECI CCNNGG 1 cut(s) 57
BssMI GATC 4 cut(s) 49, 61, 614, 1039
BssNI GRCGYC 1 cut(s) 795
BssSI CACGAG 2 cut(s) 168, 319
Bst2BI CACGAG 2 cut(s) 168, 319
Bst2UI CCWGG 2 cut(s) 59, 779
Bst4CI ACNGT 2 cut(s) 508, 804
BstACI GRCGYC 1 cut(s) 795
BstAUI TGTACA 1 cut(s) 1034
BstC8I GCNNGC 1 cut(s) 26
BstDEI CTNAG 4 cut(s) 8, 863, 961, 1125
BstF5I GGATG 5 cut(s) 93, 344, 400, 572, 670
BstFNI CGCG 1 cut(s) 887
BstH2I RGCGCY 1 cut(s) 798
BstHHI GCGC 2 cut(s) 122, 797
BstKTI GATC 4 cut(s) 52, 64, 617, 1042
BstMAI GTCTC 4 cut(s) 284, 544, 602, 964
BstMBI GATC 4 cut(s) 49, 61, 614, 1039
BstNI CCWGG 2 cut(s) 59, 779
BstSCI CCNGG 3 cut(s) 57, 235, 777
BstSFI CTRYAG 2 cut(s) 951, 1096
BstUI CGCG 1 cut(s) 887
BstV1I GCAGC 3 cut(s) 414, 719, 722
BstV2I GAAGAC 1 cut(s) 321
BstX2I RGATCY 2 cut(s) 61, 1039
BstXI CCANNNNNNTGG 1 cut(s) 1119
BstYI RGATCY 2 cut(s) 61, 1039
BsuRI GGCC 2 cut(s) 240, 983
BtrI CACGTC 1 cut(s) 1004
BtsCI GGATG 5 cut(s) 93, 344, 400, 572, 670
BtsI GCAGTG 1 cut(s) 191
BtsIMutI CAGTG 3 cut(s) 191, 248, 1133
Cac8I GCNNGC 1 cut(s) 26
CfoI GCGC 2 cut(s) 122, 797
Cfr13I GGNCC 2 cut(s) 12, 525
CseI GACGC 1 cut(s) 893
CsiI ACCWGGT 1 cut(s) 777
Csp6I GTAC 5 cut(s) 764, 775, 823, 867, 1035
CviAII CATG 3 cut(s) 97, 135, 413
CviJI RGCY 9 cut(s) 28, 38, 240, 343, 629, 669, 817, 917, 983
CviKI_1 RGCY 9 cut(s) 28, 38, 240, 343, 629, 669, 817, 917, 983
CviQI GTAC 5 cut(s) 764, 775, 823, 867, 1035
DdeI CTNAG 4 cut(s) 8, 863, 961, 1125
DinI GGCGCC 1 cut(s) 796
DpnI GATC 4 cut(s) 51, 63, 616, 1041
DpnII GATC 4 cut(s) 49, 61, 614, 1039
DraI TTTAAA 1 cut(s) 933
EaeI YGGCCR 1 cut(s) 238
Eco31I GGTCTC 2 cut(s) 544, 964
Eco47I GGWCC 2 cut(s) 12, 525
EcoRII CCWGG 2 cut(s) 57, 777
EgeI GGCGCC 1 cut(s) 796
EheI GGCGCC 1 cut(s) 796
FaeI CATG 3 cut(s) 100, 138, 416
FalI AAGNNNNNCTT 2 cut(s) 455, 487
FatI CATG 3 cut(s) 96, 134, 412
FauNDI CATATG 2 cut(s) 619, 1114
Fnu4HI GCNGC 4 cut(s) 147, 428, 708, 711
FokI GGATG 5 cut(s) 100, 351, 387, 579, 677
Fsp4HI GCNGC 4 cut(s) 147, 428, 708, 711
FspBI CTAG 2 cut(s) 480, 746
GlaI GCGC 2 cut(s) 121, 796
GluI GCNGC 4 cut(s) 147, 428, 708, 711
GsuI CTGGAG 1 cut(s) 568
HaeII RGCGCY 1 cut(s) 798
HaeIII GGCC 2 cut(s) 240, 983
HapII CCGG 2 cut(s) 237, 814
HgaI GACGC 1 cut(s) 893
HhaI GCGC 2 cut(s) 122, 797
Hin1I GRCGYC 1 cut(s) 795
Hin1II CATG 3 cut(s) 100, 138, 416
Hin6I GCGC 2 cut(s) 120, 795
HinP1I GCGC 2 cut(s) 120, 795
HinfI GANTC 6 cut(s) 92, 377, 602, 785, 910, 1123
HpaII CCGG 2 cut(s) 237, 814
HphI GGTGA 1 cut(s) 340
Hpy166II GTNNAC 3 cut(s) 177, 825, 1131
Hpy188III TCNNGA 4 cut(s) 273, 381, 547, 831
Hpy8I GTNNAC 3 cut(s) 177, 825, 1131
Hpy99I CGWCG 1 cut(s) 309
HpyAV CCTTC 5 cut(s) 14, 39, 495, 550, 883
HpyCH4III ACNGT 2 cut(s) 508, 804
HpyCH4IV ACGT 3 cut(s) 304, 687, 1003
HpyCH4V TGCA 5 cut(s) 100, 400, 990, 1001, 1023
HpyF3I CTNAG 4 cut(s) 8, 863, 961, 1125
HpySE526I ACGT 3 cut(s) 304, 687, 1003
Hsp92I GRCGYC 1 cut(s) 795
Hsp92II CATG 3 cut(s) 100, 138, 416
HspAI GCGC 2 cut(s) 120, 795
KasI GGCGCC 1 cut(s) 794
Kzo9I GATC 4 cut(s) 49, 61, 614, 1039
Lsp1109I GCAGC 3 cut(s) 414, 719, 722
LweI GCATC 2 cut(s) 409, 723
MabI ACCWGGT 1 cut(s) 777
MaeI CTAG 2 cut(s) 480, 746
MaeII ACGT 3 cut(s) 304, 687, 1003
MaeIII GTNAC 2 cut(s) 245, 683
MalI GATC 4 cut(s) 51, 63, 616, 1041
MboI GATC 4 cut(s) 49, 61, 614, 1039
MboII GAAGA 6 cut(s) 44, 321, 428, 712, 933, 1001
MfeI CAATTG 4 cut(s) 644, 770, 874, 985
MflI RGATCY 2 cut(s) 61, 1039
MluCI AATT 9 cut(s) 312, 362, 420, 595, 644, 770, 874, 937, 985
Mly113I GGCGCC 1 cut(s) 795
MlyI GAGTC 1 cut(s) 1117
MmeI TCCRAC 2 cut(s) 861, 1052
MnlI CCTC 8 cut(s) 208, 263, 328, 364, 847, 886, 949, 1063
MseI TTAA 2 cut(s) 279, 932
MslI CAYNNNNRTG 1 cut(s) 1117
MspI CCGG 2 cut(s) 237, 814
MspR9I CCNGG 3 cut(s) 59, 237, 779
MssI GTTTAAAC 1 cut(s) 933
MunI CAATTG 4 cut(s) 644, 770, 874, 985
Mva1269I GAATGC 1 cut(s) 1025
MvaI CCWGG 2 cut(s) 59, 779
MvnI CGCG 1 cut(s) 887
NarI GGCGCC 1 cut(s) 795
NciI CCSGG 1 cut(s) 237
NdeI CATATG 2 cut(s) 619, 1114
NdeII GATC 4 cut(s) 49, 61, 614, 1039
NlaIII CATG 3 cut(s) 100, 138, 416
NlaIV GGNNCC 3 cut(s) 526, 796, 858
NmuCI GTSAC 1 cut(s) 683
PctI GAATGC 1 cut(s) 1025
PfeI GAWTC 5 cut(s) 92, 377, 602, 785, 910
PflMI CCANNNNNTGG 1 cut(s) 88
PkrI GCNGC 4 cut(s) 148, 429, 709, 712
PleI GAGTC 1 cut(s) 1117
PluTI GGCGCC 1 cut(s) 798
PmeI GTTTAAAC 1 cut(s) 933
PpsI GAGTC 1 cut(s) 1117
Psp6I CCWGG 2 cut(s) 57, 777
PspGI CCWGG 2 cut(s) 57, 777
PspN4I GGNNCC 3 cut(s) 526, 796, 858
PspPI GGNCC 2 cut(s) 12, 525
PsuI RGATCY 2 cut(s) 61, 1039
RsaI GTAC 5 cut(s) 765, 776, 824, 868, 1036
RsaNI GTAC 5 cut(s) 764, 775, 823, 867, 1035
RseI CAYNNNNRTG 1 cut(s) 1117
SaqAI TTAA 2 cut(s) 279, 932
SatI GCNGC 4 cut(s) 147, 428, 708, 711
Sau3AI GATC 4 cut(s) 49, 61, 614, 1039
Sau96I GGNCC 2 cut(s) 12, 525
ScaI AGTACT 1 cut(s) 868
SchI GAGTC 1 cut(s) 1117
ScrFI CCNGG 3 cut(s) 59, 237, 779
SexAI ACCWGGT 1 cut(s) 777
SfaNI GCATC 2 cut(s) 409, 723
SfcI CTRYAG 2 cut(s) 951, 1096
SfoI GGCGCC 1 cut(s) 796
SinI GGWCC 2 cut(s) 12, 525
SmiMI CAYNNNNRTG 1 cut(s) 1117
SmlI CTYRAG 1 cut(s) 818
SmoI CTYRAG 1 cut(s) 818
Sse9I AATT 9 cut(s) 312, 362, 420, 595, 644, 770, 874, 937, 985
SsiI CCGC 2 cut(s) 147, 351
SspDI GGCGCC 1 cut(s) 794
SspI AATATT 1 cut(s) 223
SspMI CTAG 2 cut(s) 480, 746
StyD4I CCNGG 3 cut(s) 57, 235, 777
TaaI ACNGT 2 cut(s) 508, 804
TaiI ACGT 3 cut(s) 307, 690, 1006
TaqI TCGA 4 cut(s) 657, 832, 913, 1074
TaqII GACCGA 1 cut(s) 568
TasI AATT 9 cut(s) 312, 362, 420, 595, 644, 770, 874, 937, 985
TatI WGTACW 3 cut(s) 822, 866, 1034
TauI GCSGC 1 cut(s) 149
TfiI GAWTC 5 cut(s) 92, 377, 602, 785, 910
Tru1I TTAA 2 cut(s) 279, 932
Tru9I TTAA 2 cut(s) 279, 932
TscAI CASTG 3 cut(s) 198, 248, 1133
TseFI GTSAC 1 cut(s) 683
TseI GCWGC 3 cut(s) 427, 707, 710
Tsp45I GTSAC 1 cut(s) 683
TspDTI ATGAA 4 cut(s) 97, 429, 933, 1073
TspRI CASTG 3 cut(s) 198, 248, 1133
Van91I CCANNNNNTGG 1 cut(s) 88
VpaK11BI GGWCC 2 cut(s) 12, 525
XapI RAATTY 1 cut(s) 362
XspI CTAG 2 cut(s) 480, 746
ZrmI AGTACT 1 cut(s) 868
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.