AT4G01897

Protein of unknown function (DUF952)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0015370
Physical Location & Seq
Reverse (-)
820336 .. 821618
1283 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G01897.1

Sequence Viewer

Length: 369 bp
ATGGCTGAGGAAGAGTTCATATACAGAATCAGTACGGAACAAGAATGGGAAGAGTTTAAGAAGAATGGATCTTCTTATGGTGCAGAGATTGATAAATCAACTTGTTATTATCATCTCAGCAAACTTGATCAGGTACAATTGACATTGAAGAACTTTTTCGTGGATGTGAAGGAGTATCTTTACCTTCTTCAAGTCGATCCTAAGAAGCTTGGAGATGGATTAATCTATGAAGCTGTGGATGAAGTAAATAGCTTCCCTCACTTCTATGGTCCAGACAAAACCTTCGTTCCTCTTCCTCTAGATTCTGTCGTCAAAGCTGAGAAGCTAACATTCATCAATGGAAATTTCACATGCAGCTTCTTGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF952

Protein Analysis

122

Amino Acids

14.16

Weight (kDa)

4.67

Isoelectric Point (pI)

19.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF952 PF06108 10 - 105 2.6e-23 Protein of unknown function (DUF952)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015370)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01897
fragaria_vesca FvH4_1g26600
malus_domestica MD09G1287800.v1.1 MD17G1280000.v1.1
prunus_persica Prupe.3G005400_v2.0.a1
pyrus_communis pycom17g27800
rosa_chinensis RchiOBHm_Chr3g0486741
rosa_laevigata RLG00000023065
rosa_multiflora Rmu_sc0000261.1_g000016
rosa_roxburghii Rroxscaffold_6G00395640
rosa_rugosa Rorug03G0227000 Rorug03G0227000
rosa_samantha Rh3BG311500 Rh3CG310800 Rh3DG307300
rosa_wichuraiana Rw3G024610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 76, 191
AcsI RAATTY 1 cut(s) 343
AfaI GTAC 2 cut(s) 34, 135
AgsI TTSAA 2 cut(s) 148, 191
AluBI AGCT 6 cut(s) 208, 233, 252, 317, 325, 357
AluI AGCT 6 cut(s) 208, 233, 252, 317, 325, 357
AlwI GGATC 2 cut(s) 76, 191
ApeKI GCWGC 1 cut(s) 354
ApoI RAATTY 1 cut(s) 343
ArsI GACNNNNNNTTYG 2 cut(s) 266, 298
AseI ATTAAT 1 cut(s) 221
Asp700I GAANNNNTTC 1 cut(s) 155
AspS9I GGNCC 1 cut(s) 269
AvaII GGWCC 1 cut(s) 269
BbvCI CCTCAGC 1 cut(s) 6
BccI CCATC 1 cut(s) 209
BclI TGATCA 1 cut(s) 127
BfaI CTAG 1 cut(s) 299
BisI GCNGC 1 cut(s) 355
BlsI GCNGC 1 cut(s) 356
Bme18I GGWCC 1 cut(s) 269
BmgT120I GGNCC 1 cut(s) 269
Bpu10I CCTNAGC 1 cut(s) 6
BseGI GGATG 2 cut(s) 169, 244
BseMII CTCAG 2 cut(s) 130, 309
BsgI GTGCAG 1 cut(s) 102
Bsp143I GATC 3 cut(s) 68, 127, 196
BspCNI CTCAG 2 cut(s) 129, 310
BspPI GGATC 2 cut(s) 76, 191
BssMI GATC 3 cut(s) 68, 127, 196
Bst6I CTCTTC 3 cut(s) 6, 45, 297
BstDEI CTNAG 4 cut(s) 6, 116, 201, 318
BstF5I GGATG 2 cut(s) 169, 244
BstKTI GATC 3 cut(s) 71, 130, 199
BstMBI GATC 3 cut(s) 68, 127, 196
BstNSI RCATGY 1 cut(s) 354
BstX2I RGATCY 1 cut(s) 68
BstYI RGATCY 1 cut(s) 68
BtsCI GGATG 2 cut(s) 169, 244
Cfr13I GGNCC 1 cut(s) 269
Csp6I GTAC 2 cut(s) 33, 134
CviAII CATG 1 cut(s) 351
CviJI RGCY 7 cut(s) 5, 208, 233, 252, 317, 325, 357
CviKI_1 RGCY 7 cut(s) 5, 208, 233, 252, 317, 325, 357
CviQI GTAC 2 cut(s) 33, 134
DdeI CTNAG 4 cut(s) 6, 116, 201, 318
DpnI GATC 3 cut(s) 70, 129, 198
DpnII GATC 3 cut(s) 68, 127, 196
Eam1104I CTCTTC 3 cut(s) 6, 45, 297
EarI CTCTTC 3 cut(s) 6, 45, 297
Eco47I GGWCC 1 cut(s) 269
FaeI CATG 1 cut(s) 354
FaiI YATR 6 cut(s) 20, 22, 78, 228, 267, 352
FatI CATG 1 cut(s) 350
FbaI TGATCA 1 cut(s) 127
Fnu4HI GCNGC 1 cut(s) 355
FokI GGATG 2 cut(s) 176, 251
Fsp4HI GCNGC 1 cut(s) 355
FspBI CTAG 1 cut(s) 299
GluI GCNGC 1 cut(s) 355
Hin1II CATG 1 cut(s) 354
HindIII AAGCTT 1 cut(s) 206
HinfI GANTC 2 cut(s) 27, 302
Hpy188III TCNNGA 3 cut(s) 272, 299, 361
HpyAV CCTTC 3 cut(s) 163, 194, 292
HpyCH4V TGCA 2 cut(s) 83, 354
HpyF3I CTNAG 4 cut(s) 6, 116, 201, 318
Hsp92II CATG 1 cut(s) 354
Ksp22I TGATCA 1 cut(s) 127
Kzo9I GATC 3 cut(s) 68, 127, 196
LpnPI CCDG 2 cut(s) 116, 285
MaeI CTAG 1 cut(s) 299
MalI GATC 3 cut(s) 70, 129, 198
MboI GATC 3 cut(s) 68, 127, 196
MboII GAAGA 7 cut(s) 23, 62, 63, 73, 160, 179, 284
MfeI CAATTG 1 cut(s) 137
MflI RGATCY 1 cut(s) 68
MluCI AATT 2 cut(s) 137, 343
MnlI CCTC 3 cut(s) 267, 300, 306
MroXI GAANNNNTTC 1 cut(s) 155
MseI TTAA 2 cut(s) 57, 221
MslI CAYNNNNRTG 1 cut(s) 264
MunI CAATTG 1 cut(s) 137
NdeII GATC 3 cut(s) 68, 127, 196
NlaIII CATG 1 cut(s) 354
NspI RCATGY 1 cut(s) 354
PdmI GAANNNNTTC 1 cut(s) 155
PfeI GAWTC 2 cut(s) 27, 302
PkrI GCNGC 1 cut(s) 356
PshBI ATTAAT 1 cut(s) 221
PspPI GGNCC 1 cut(s) 269
PsuI RGATCY 1 cut(s) 68
RsaI GTAC 2 cut(s) 34, 135
RsaNI GTAC 2 cut(s) 33, 134
RseI CAYNNNNRTG 1 cut(s) 264
SaqAI TTAA 2 cut(s) 57, 221
SatI GCNGC 1 cut(s) 355
Sau3AI GATC 3 cut(s) 68, 127, 196
Sau96I GGNCC 1 cut(s) 269
SetI ASST 9 cut(s) 135, 186, 210, 235, 254, 284, 319, 327, 359
SinI GGWCC 1 cut(s) 269
SmiMI CAYNNNNRTG 1 cut(s) 264
Sse9I AATT 2 cut(s) 137, 343
SspMI CTAG 1 cut(s) 299
TaqI TCGA 1 cut(s) 195
TasI AATT 2 cut(s) 137, 343
TfiI GAWTC 2 cut(s) 27, 302
Tru1I TTAA 2 cut(s) 57, 221
Tru9I TTAA 2 cut(s) 57, 221
TseI GCWGC 1 cut(s) 354
TspDTI ATGAA 4 cut(s) 7, 243, 255, 322
TspGWI ACGGA 1 cut(s) 50
VpaK11BI GGWCC 1 cut(s) 269
VspI ATTAAT 1 cut(s) 221
XapI RAATTY 1 cut(s) 343
XbaI TCTAGA 1 cut(s) 298
XceI RCATGY 1 cut(s) 354
XmnI GAANNNNTTC 1 cut(s) 155
XspI CTAG 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.