FvH4_1g26600

Protein of unknown function (DUF952)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0015370
Physical Location & Seq
Forward (+)
18421420 .. 18423791
2372 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g26600.t1

Sequence Viewer

Length: 390 bp
ATGGCTGAAGGGGAAGAAGATGGTAAGGAAGAAGAATATGTGTACAGAATCAGCAGAGGTGAGGAGTGGCAAGAGTTGCAGAGCTCGGGGTCCACTTTTGGTGGAGAGCTTGACAAGAATTCTGGCTTCATTCATCTCAGCAAACTCATTCAGGTACAATCAACCTTGCAGAATTTTTTTCTCAACATCAAGGTGGATCTTTACCTGCTACAAATTGATGCTAAAAAGCTGGGCAAAGGATTAGTCTATGAAGTTGTTGATGGTTCCAATAGCTTCCCTCATTTCTACGGTCCATCTCAAAGCTTCAGTCCTCTCTATCTAGATGTTGTTACAAAAGCAGAGAAGTTGTGTCTGTCAGGTGACAGATTTATATGTAGTATGTTGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF952

Protein Analysis

130

Amino Acids

14.56

Weight (kDa)

4.74

Isoelectric Point (pI)

43.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF952 PF06108 18 - 104 3.3e-23 Protein of unknown function (DUF952)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015370)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01897
fragaria_vesca FvH4_1g26600
malus_domestica MD09G1287800.v1.1 MD17G1280000.v1.1
prunus_persica Prupe.3G005400_v2.0.a1
pyrus_communis pycom17g27800
rosa_chinensis RchiOBHm_Chr3g0486741
rosa_laevigata RLG00000023065
rosa_multiflora Rmu_sc0000261.1_g000016
rosa_roxburghii Rroxscaffold_6G00395640
rosa_rugosa Rorug03G0227000 Rorug03G0227000
rosa_samantha Rh3BG311500 Rh3CG310800 Rh3DG307300
rosa_wichuraiana Rw3G024610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 213
AclWI GGATC 1 cut(s) 204
AcsI RAATTY 2 cut(s) 118, 172
AcuI CTGAAG 2 cut(s) 27, 289
AfaI GTAC 2 cut(s) 44, 156
AluBI AGCT 5 cut(s) 84, 109, 229, 273, 303
AluI AGCT 5 cut(s) 84, 109, 229, 273, 303
Alw21I GWGCWC 1 cut(s) 86
AlwI GGATC 1 cut(s) 204
Ama87I CYCGRG 1 cut(s) 85
ApoI RAATTY 2 cut(s) 118, 172
ArsI GACNNNNNNTTYG 4 cut(s) 228, 260, 292, 324
AspS9I GGNCC 2 cut(s) 90, 290
AsuHPI GGTGA 2 cut(s) 71, 371
AvaI CYCGRG 1 cut(s) 85
AvaII GGWCC 2 cut(s) 90, 290
BanII GRGCYC 1 cut(s) 86
Bbv12I GWGCWC 1 cut(s) 86
BccI CCATC 3 cut(s) 14, 254, 301
BfaI CTAG 1 cut(s) 320
BfuAI ACCTGC 1 cut(s) 213
Bme18I GGWCC 2 cut(s) 90, 290
BmeT110I CYCGRG 1 cut(s) 85
BmgT120I GGNCC 2 cut(s) 90, 290
BmiI GGNNCC 2 cut(s) 91, 265
BmsI GCATC 1 cut(s) 208
BseMII CTCAG 1 cut(s) 151
BseRI GAGGAG 1 cut(s) 77
BseYI CCCAGC 1 cut(s) 229
BsiHKAI GWGCWC 1 cut(s) 86
BsiHKCI CYCGRG 1 cut(s) 85
BsoBI CYCGRG 1 cut(s) 85
Bsp1286I GDGCHC 1 cut(s) 86
Bsp1407I TGTACA 1 cut(s) 42
Bsp143I GATC 1 cut(s) 196
BspCNI CTCAG 1 cut(s) 150
BspLI GGNNCC 2 cut(s) 91, 265
BspMI ACCTGC 1 cut(s) 213
BspPI GGATC 1 cut(s) 204
BsrGI TGTACA 1 cut(s) 42
BssMI GATC 1 cut(s) 196
Bst4CI ACNGT 1 cut(s) 290
BstAPI GCANNNNNTGC 1 cut(s) 76
BstAUI TGTACA 1 cut(s) 42
BstDEI CTNAG 1 cut(s) 137
BstKTI GATC 1 cut(s) 199
BstMBI GATC 1 cut(s) 196
BstMWI GCNNNNNNNGC 1 cut(s) 76
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
BveI ACCTGC 1 cut(s) 213
Cfr13I GGNCC 2 cut(s) 90, 290
Csp6I GTAC 2 cut(s) 43, 155
CviJI RGCY 7 cut(s) 5, 84, 109, 126, 229, 273, 303
CviKI_1 RGCY 7 cut(s) 5, 84, 109, 126, 229, 273, 303
CviQI GTAC 2 cut(s) 43, 155
DdeI CTNAG 1 cut(s) 137
DpnI GATC 1 cut(s) 198
DpnII GATC 1 cut(s) 196
Ecl136II GAGCTC 1 cut(s) 84
Eco24I GRGCYC 1 cut(s) 86
Eco47I GGWCC 2 cut(s) 90, 290
Eco53kI GAGCTC 1 cut(s) 84
Eco57I CTGAAG 2 cut(s) 27, 289
Eco88I CYCGRG 1 cut(s) 85
EcoICRI GAGCTC 1 cut(s) 84
EcoRI GAATTC 1 cut(s) 118
EcoT38I GRGCYC 1 cut(s) 86
FaiI YATR 5 cut(s) 39, 249, 371, 373, 380
FriOI GRGCYC 1 cut(s) 86
FspBI CTAG 1 cut(s) 320
GsaI CCCAGC 1 cut(s) 233
HindIII AAGCTT 1 cut(s) 301
HinfI GANTC 1 cut(s) 48
HphI GGTGA 2 cut(s) 71, 371
Hpy166II GTNNAC 2 cut(s) 43, 93
Hpy188III TCNNGA 1 cut(s) 320
Hpy8I GTNNAC 2 cut(s) 43, 93
HpyCH4III ACNGT 1 cut(s) 290
HpyCH4V TGCA 2 cut(s) 79, 169
HpyF10VI GCNNNNNNNGC 1 cut(s) 76
HpyF3I CTNAG 1 cut(s) 137
Kzo9I GATC 1 cut(s) 196
LpnPI CCDG 5 cut(s) 108, 137, 215, 218, 342
LweI GCATC 1 cut(s) 208
MaeI CTAG 1 cut(s) 320
MaeIII GTNAC 2 cut(s) 328, 359
MalI GATC 1 cut(s) 198
MboI GATC 1 cut(s) 196
MboII GAAGA 4 cut(s) 26, 29, 41, 44
MflI RGATCY 1 cut(s) 196
MhlI GDGCHC 1 cut(s) 86
MluCI AATT 3 cut(s) 118, 172, 213
MmeI TCCRAC 1 cut(s) 363
MnlI CCTC 4 cut(s) 50, 55, 288, 321
MslI CAYNNNNRTG 1 cut(s) 191
MwoI GCNNNNNNNGC 1 cut(s) 76
NdeII GATC 1 cut(s) 196
NlaIV GGNNCC 2 cut(s) 91, 265
NmuCI GTSAC 1 cut(s) 359
PfeI GAWTC 1 cut(s) 48
Psp124BI GAGCTC 1 cut(s) 86
PspFI CCCAGC 1 cut(s) 229
PspN4I GGNNCC 2 cut(s) 91, 265
PspPI GGNCC 2 cut(s) 90, 290
PsuI RGATCY 1 cut(s) 196
RsaI GTAC 2 cut(s) 44, 156
RsaNI GTAC 2 cut(s) 43, 155
RseI CAYNNNNRTG 1 cut(s) 191
SacI GAGCTC 1 cut(s) 86
Sau3AI GATC 1 cut(s) 196
Sau96I GGNCC 2 cut(s) 90, 290
SduI GDGCHC 1 cut(s) 86
SfaNI GCATC 1 cut(s) 208
SinI GGWCC 2 cut(s) 90, 290
SmiMI CAYNNNNRTG 1 cut(s) 191
Sse9I AATT 3 cut(s) 118, 172, 213
SspMI CTAG 1 cut(s) 320
SstI GAGCTC 1 cut(s) 86
TaaI ACNGT 1 cut(s) 290
TasI AATT 3 cut(s) 118, 172, 213
TatI WGTACW 1 cut(s) 42
TfiI GAWTC 1 cut(s) 48
TseFI GTSAC 1 cut(s) 359
Tsp45I GTSAC 1 cut(s) 359
TspDTI ATGAA 3 cut(s) 118, 122, 264
VpaK11BI GGWCC 2 cut(s) 90, 290
XapI RAATTY 2 cut(s) 118, 172
XbaI TCTAGA 1 cut(s) 319
XspI CTAG 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.