RchiOBHm_Chr3g0486741

Protein of unknown function (DUF952)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0015370
Physical Location & Seq
Forward (+)
33580745 .. 33584616
3872 bp
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UTR
Exon/CDS
Intron
PRQ45122

Sequence Viewer

Length: 381 bp
ATGGCTGCAAGTGAAGGTGAAGAATATGTGTACAGAATCAGCAGAGGTGAGGAGTGGCAAGAGTTGCAGAGCTCTGGTTCCACTTTTGGTGGAGAGCTTGACAAGAATTCTGGCTTCATTCATCTCAGCAAACTCAATCAGGTACAATCAACATTACAGAATTTTTTCCTGAACACCAAGGTTGATCTTTACCTGCTTCAAATTGACCCCAAAAAGCTGGGCAAAGGATTAGTCTATGAAGTTGTTGATGGTTCCAATAGCTTCCCTCATTTCTATGGTCCATCTCGAAGCTTCAGTCCTCTCTCTCTAGATGCTGTTACGAAAGCAGAGAAGCTGTCTCTGTCAGCCAATATCACTGCTAATGATAATCGAGCCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF952

Protein Analysis

126

Amino Acids

13.95

Weight (kDa)

5.32

Isoelectric Point (pI)

38.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF952 PF06108 14 - 108 6.4e-25 Protein of unknown function (DUF952)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015370)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01897
fragaria_vesca FvH4_1g26600
malus_domestica MD09G1287800.v1.1 MD17G1280000.v1.1
prunus_persica Prupe.3G005400_v2.0.a1
pyrus_communis pycom17g27800
rosa_chinensis RchiOBHm_Chr3g0486741
rosa_laevigata RLG00000023065
rosa_multiflora Rmu_sc0000261.1_g000016
rosa_roxburghii Rroxscaffold_6G00395640
rosa_rugosa Rorug03G0227000 Rorug03G0227000
rosa_samantha Rh3BG311500 Rh3CG310800 Rh3DG307300
rosa_wichuraiana Rw3G024610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 201
AcsI RAATTY 2 cut(s) 106, 160
AcuI CTGAAG 1 cut(s) 277
AfaI GTAC 2 cut(s) 32, 144
AgsI TTSAA 1 cut(s) 200
AluBI AGCT 6 cut(s) 72, 97, 217, 261, 291, 334
AluI AGCT 6 cut(s) 72, 97, 217, 261, 291, 334
Alw21I GWGCWC 1 cut(s) 74
Alw26I GTCTC 1 cut(s) 342
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 2 cut(s) 106, 160
ArsI GACNNNNNNTTYG 4 cut(s) 216, 248, 280, 312
Asp700I GAANNNNTTC 1 cut(s) 164
AspS9I GGNCC 1 cut(s) 278
AsuHPI GGTGA 2 cut(s) 29, 59
AvaII GGWCC 1 cut(s) 278
BanII GRGCYC 1 cut(s) 74
Bbv12I GWGCWC 1 cut(s) 74
BccI CCATC 2 cut(s) 242, 289
BcoDI GTCTC 1 cut(s) 342
BfaI CTAG 2 cut(s) 308, 379
BfuAI ACCTGC 1 cut(s) 201
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme18I GGWCC 1 cut(s) 278
BmgT120I GGNCC 1 cut(s) 278
BmiI GGNNCC 2 cut(s) 79, 253
BmsI GCATC 1 cut(s) 301
BsaJI CCNNGG 1 cut(s) 177
BseDI CCNNGG 1 cut(s) 177
BseMII CTCAG 1 cut(s) 139
BseRI GAGGAG 1 cut(s) 65
BseYI CCCAGC 1 cut(s) 217
BsiHKAI GWGCWC 1 cut(s) 74
BsmAI GTCTC 1 cut(s) 342
Bsp1286I GDGCHC 1 cut(s) 74
Bsp1407I TGTACA 1 cut(s) 30
Bsp143I GATC 1 cut(s) 184
BspCNI CTCAG 1 cut(s) 138
BspLI GGNNCC 2 cut(s) 79, 253
BspMI ACCTGC 1 cut(s) 201
BsrGI TGTACA 1 cut(s) 30
BssECI CCNNGG 1 cut(s) 177
BssMI GATC 1 cut(s) 184
BssT1I CCWWGG 1 cut(s) 177
BstAPI GCANNNNNTGC 1 cut(s) 64
BstAUI TGTACA 1 cut(s) 30
BstDEI CTNAG 1 cut(s) 125
BstKTI GATC 1 cut(s) 187
BstMAI GTCTC 1 cut(s) 342
BstMBI GATC 1 cut(s) 184
BstMWI GCNNNNNNNGC 1 cut(s) 64
BstXI CCANNNNNNTGG 1 cut(s) 217
BtsI GCAGTG 1 cut(s) 354
BtsIMutI CAGTG 1 cut(s) 354
BveI ACCTGC 1 cut(s) 201
Cfr13I GGNCC 1 cut(s) 278
Csp6I GTAC 2 cut(s) 31, 143
CviQI GTAC 2 cut(s) 31, 143
DdeI CTNAG 1 cut(s) 125
DpnI GATC 1 cut(s) 186
DpnII GATC 1 cut(s) 184
Ecl136II GAGCTC 1 cut(s) 72
Eco130I CCWWGG 1 cut(s) 177
Eco24I GRGCYC 1 cut(s) 74
Eco47I GGWCC 1 cut(s) 278
Eco53kI GAGCTC 1 cut(s) 72
Eco57I CTGAAG 1 cut(s) 277
EcoICRI GAGCTC 1 cut(s) 72
EcoRI GAATTC 1 cut(s) 106
EcoT14I CCWWGG 1 cut(s) 177
EcoT38I GRGCYC 1 cut(s) 74
ErhI CCWWGG 1 cut(s) 177
FaiI YATR 3 cut(s) 27, 237, 276
Fnu4HI GCNGC 1 cut(s) 6
FriOI GRGCYC 1 cut(s) 74
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 2 cut(s) 308, 379
GluI GCNGC 1 cut(s) 6
GsaI CCCAGC 1 cut(s) 221
HindIII AAGCTT 1 cut(s) 289
HinfI GANTC 1 cut(s) 36
HphI GGTGA 2 cut(s) 29, 59
Hpy166II GTNNAC 1 cut(s) 31
Hpy188III TCNNGA 3 cut(s) 169, 285, 308
Hpy8I GTNNAC 1 cut(s) 31
HpyAV CCTTC 1 cut(s) 8
HpyCH4V TGCA 2 cut(s) 8, 67
HpyF10VI GCNNNNNNNGC 1 cut(s) 64
HpyF3I CTNAG 1 cut(s) 125
Kzo9I GATC 1 cut(s) 184
LpnPI CCDG 6 cut(s) 60, 96, 125, 182, 203, 206
LweI GCATC 1 cut(s) 301
MaeI CTAG 2 cut(s) 308, 379
MaeIII GTNAC 1 cut(s) 316
MalI GATC 1 cut(s) 186
MboI GATC 1 cut(s) 184
MboII GAAGA 1 cut(s) 32
MhlI GDGCHC 1 cut(s) 74
MluCI AATT 3 cut(s) 106, 160, 201
MnlI CCTC 4 cut(s) 38, 43, 276, 309
MroXI GAANNNNTTC 1 cut(s) 164
MslI CAYNNNNRTG 1 cut(s) 273
MwoI GCNNNNNNNGC 1 cut(s) 64
NdeII GATC 1 cut(s) 184
NlaIV GGNNCC 2 cut(s) 79, 253
PdmI GAANNNNTTC 1 cut(s) 164
PfeI GAWTC 1 cut(s) 36
PkrI GCNGC 1 cut(s) 7
Psp124BI GAGCTC 1 cut(s) 74
PspFI CCCAGC 1 cut(s) 217
PspN4I GGNNCC 2 cut(s) 79, 253
PspPI GGNCC 1 cut(s) 278
RsaI GTAC 2 cut(s) 32, 144
RsaNI GTAC 2 cut(s) 31, 143
RseI CAYNNNNRTG 1 cut(s) 273
SacI GAGCTC 1 cut(s) 74
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 1 cut(s) 184
Sau96I GGNCC 1 cut(s) 278
SduI GDGCHC 1 cut(s) 74
SfaNI GCATC 1 cut(s) 301
SinI GGWCC 1 cut(s) 278
SmiMI CAYNNNNRTG 1 cut(s) 273
Sse9I AATT 3 cut(s) 106, 160, 201
SspMI CTAG 2 cut(s) 308, 379
SstI GAGCTC 1 cut(s) 74
StyI CCWWGG 1 cut(s) 177
TaqI TCGA 2 cut(s) 286, 370
TasI AATT 3 cut(s) 106, 160, 201
TatI WGTACW 1 cut(s) 30
TfiI GAWTC 1 cut(s) 36
TscAI CASTG 1 cut(s) 361
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 3 cut(s) 106, 110, 252
TspRI CASTG 1 cut(s) 361
VpaK11BI GGWCC 1 cut(s) 278
XapI RAATTY 2 cut(s) 106, 160
XbaI TCTAGA 1 cut(s) 307
XmnI GAANNNNTTC 1 cut(s) 164
XspI CTAG 2 cut(s) 308, 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.