pycom17g27800

Protein of unknown function (DUF952)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0015370
Physical Location & Seq
Reverse (-)
25893980 .. 25894756
777 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g27800.1

Sequence Viewer

Length: 441 bp
ATGCAATTGCAGCTTGGGCTTGGACTCTTGGAGTTGGAATATCATAAGGGCTCACTGTCGCCTCAAAAGCCCATCAAAGCCCAACTGGATCCAGTAGTGTTGGAATATATGTGCCGAACGGTTGGTGGAAGACTTTCAATCTCCAGAGCAATGGCTGCAGGTGGAGGTGAAGGGATGGAAGAGTATGTGTACAGAATCAGCACTGCTGCGGAGTGGGGAGAGTTGCAGAGCTCTGGCTCTAGTTTTGGTGGAGAGCTGGACAAGAAATCTGGGTTCATTCATCTTAGCAACCTCAATCAGGTAAAGTCGACATTGCAGAATTTTTTCGTGAATACTAAGGTGGATCTTTACTTGCTTCAAATTGACACCAATAAGGTACATAGATATGAGCATCCATTTTGGTTATACTCTAACTTCGATTTCTATGGTTCGTTTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF952

Protein Analysis

147

Amino Acids

16.39

Weight (kDa)

6.06

Isoelectric Point (pI)

31.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF952 PF06108 66 - 127 3.5e-14 Protein of unknown function (DUF952)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015370)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01897
fragaria_vesca FvH4_1g26600
malus_domestica MD09G1287800.v1.1 MD17G1280000.v1.1
prunus_persica Prupe.3G005400_v2.0.a1
pyrus_communis pycom17g27800
rosa_chinensis RchiOBHm_Chr3g0486741
rosa_laevigata RLG00000023065
rosa_multiflora Rmu_sc0000261.1_g000016
rosa_roxburghii Rroxscaffold_6G00395640
rosa_rugosa Rorug03G0227000 Rorug03G0227000
rosa_samantha Rh3BG311500 Rh3CG310800 Rh3DG307300
rosa_wichuraiana Rw3G024610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 149
Acc36I ACCTGC 1 cut(s) 149
AccI GTMKAC 1 cut(s) 308
AciI CCGC 1 cut(s) 209
AclWI GGATC 3 cut(s) 83, 96, 351
AcsI RAATTY 1 cut(s) 319
AfaI GTAC 2 cut(s) 191, 378
AfiI CCNNNNNNNGG 1 cut(s) 298
AgsI TTSAA 2 cut(s) 138, 359
AluBI AGCT 3 cut(s) 13, 231, 256
AluI AGCT 3 cut(s) 13, 231, 256
Alw21I GWGCWC 1 cut(s) 233
AlwI GGATC 3 cut(s) 83, 96, 351
ApeKI GCWGC 3 cut(s) 10, 155, 206
ApoI RAATTY 1 cut(s) 319
Asp700I GAANNNNTTC 2 cut(s) 133, 323
AsuHPI GGTGA 1 cut(s) 179
BamHI GGATCC 1 cut(s) 88
BanII GRGCYC 2 cut(s) 53, 233
BbsI GAAGAC 1 cut(s) 136
Bbv12I GWGCWC 1 cut(s) 233
BbvI GCAGC 3 cut(s) 22, 142, 193
BccI CCATC 2 cut(s) 80, 169
BfaI CTAG 1 cut(s) 240
BfmI CTRYAG 1 cut(s) 156
BfuAI ACCTGC 1 cut(s) 149
BisI GCNGC 3 cut(s) 11, 156, 207
BlsI GCNGC 3 cut(s) 12, 157, 208
BmiI GGNNCC 1 cut(s) 90
BmsI GCATC 1 cut(s) 400
BpiI GAAGAC 1 cut(s) 136
BpmI CTGGAG 1 cut(s) 127
Bsc4I CCNNNNNNNGG 1 cut(s) 298
Bse1I ACTGG 2 cut(s) 90, 92
Bse3DI GCAATG 2 cut(s) 156, 311
BseGI GGATG 2 cut(s) 180, 391
BseLI CCNNNNNNNGG 1 cut(s) 298
BseMI GCAATG 2 cut(s) 156, 311
BseNI ACTGG 2 cut(s) 90, 92
BseXI GCAGC 3 cut(s) 22, 142, 193
BsiHKAI GWGCWC 1 cut(s) 233
BslI CCNNNNNNNGG 1 cut(s) 298
Bsp1286I GDGCHC 2 cut(s) 53, 233
Bsp1407I TGTACA 1 cut(s) 189
Bsp143I GATC 2 cut(s) 88, 343
BspACI CCGC 1 cut(s) 209
BspLI GGNNCC 1 cut(s) 90
BspMAI CTGCAG 1 cut(s) 160
BspMI ACCTGC 1 cut(s) 149
BspPI GGATC 3 cut(s) 83, 96, 351
BsrDI GCAATG 2 cut(s) 156, 311
BsrGI TGTACA 1 cut(s) 189
BsrI ACTGG 2 cut(s) 90, 92
BssMI GATC 2 cut(s) 88, 343
Bst4CI ACNGT 2 cut(s) 57, 121
Bst6I CTCTTC 1 cut(s) 174
BstAPI GCANNNNNTGC 1 cut(s) 155
BstAUI TGTACA 1 cut(s) 189
BstDEI CTNAG 2 cut(s) 284, 336
BstENI CCTNNNNNAGG 1 cut(s) 296
BstF5I GGATG 2 cut(s) 180, 391
BstKTI GATC 2 cut(s) 91, 346
BstMBI GATC 2 cut(s) 88, 343
BstMWI GCNNNNNNNGC 4 cut(s) 10, 16, 67, 155
BstSFI CTRYAG 1 cut(s) 156
BstV1I GCAGC 3 cut(s) 22, 142, 193
BstV2I GAAGAC 1 cut(s) 136
BstX2I RGATCY 2 cut(s) 88, 343
BstXI CCANNNNNNTGG 1 cut(s) 151
BstYI RGATCY 2 cut(s) 88, 343
BtsCI GGATG 2 cut(s) 180, 391
BtsI GCAGTG 1 cut(s) 201
BtsIMutI CAGTG 2 cut(s) 53, 201
BveI ACCTGC 1 cut(s) 149
Csp6I GTAC 2 cut(s) 190, 377
CviJI RGCY 9 cut(s) 13, 19, 51, 70, 80, 155, 231, 237, 256
CviKI_1 RGCY 9 cut(s) 13, 19, 51, 70, 80, 155, 231, 237, 256
CviQI GTAC 2 cut(s) 190, 377
DdeI CTNAG 2 cut(s) 284, 336
DpnI GATC 2 cut(s) 90, 345
DpnII GATC 2 cut(s) 88, 343
Eam1104I CTCTTC 1 cut(s) 174
EarI CTCTTC 1 cut(s) 174
Ecl136II GAGCTC 1 cut(s) 231
Eco24I GRGCYC 2 cut(s) 53, 233
Eco53kI GAGCTC 1 cut(s) 231
EcoICRI GAGCTC 1 cut(s) 231
EcoNI CCTNNNNNAGG 1 cut(s) 296
EcoT38I GRGCYC 2 cut(s) 53, 233
FaiI YATR 8 cut(s) 45, 108, 110, 186, 381, 387, 406, 426
FblI GTMKAC 1 cut(s) 308
Fnu4HI GCNGC 3 cut(s) 11, 156, 207
FokI GGATG 2 cut(s) 187, 378
FriOI GRGCYC 2 cut(s) 53, 233
Fsp4HI GCNGC 3 cut(s) 11, 156, 207
FspBI CTAG 1 cut(s) 240
GluI GCNGC 3 cut(s) 11, 156, 207
GsuI CTGGAG 1 cut(s) 127
HincII GTYRAC 1 cut(s) 309
HindII GTYRAC 1 cut(s) 309
HinfI GANTC 2 cut(s) 24, 195
HphI GGTGA 1 cut(s) 179
Hpy166II GTNNAC 2 cut(s) 190, 309
Hpy188III TCNNGA 2 cut(s) 144, 328
Hpy8I GTNNAC 2 cut(s) 190, 309
HpyAV CCTTC 1 cut(s) 164
HpyCH4III ACNGT 2 cut(s) 57, 121
HpyCH4V TGCA 5 cut(s) 4, 10, 158, 226, 316
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 16, 67, 155
HpyF3I CTNAG 2 cut(s) 284, 336
Kzo9I GATC 2 cut(s) 88, 343
LpnPI CCDG 8 cut(s) 71, 105, 144, 157, 219, 242, 255, 284
Lsp1109I GCAGC 3 cut(s) 22, 142, 193
LweI GCATC 1 cut(s) 400
MaeI CTAG 1 cut(s) 240
MalI GATC 2 cut(s) 90, 345
MboI GATC 2 cut(s) 88, 343
MboII GAAGA 2 cut(s) 141, 191
MfeI CAATTG 1 cut(s) 5
MflI RGATCY 2 cut(s) 88, 343
MhlI GDGCHC 2 cut(s) 53, 233
MluCI AATT 3 cut(s) 5, 319, 360
MlyI GAGTC 1 cut(s) 18
MmeI TCCRAC 2 cut(s) 15, 81
MnlI CCTC 3 cut(s) 72, 158, 302
MroXI GAANNNNTTC 2 cut(s) 133, 323
MslI CAYNNNNRTG 1 cut(s) 384
MunI CAATTG 1 cut(s) 5
MwoI GCNNNNNNNGC 4 cut(s) 10, 16, 67, 155
NdeII GATC 2 cut(s) 88, 343
NlaIV GGNNCC 1 cut(s) 90
PaqCI CACCTGC 1 cut(s) 149
PdmI GAANNNNTTC 2 cut(s) 133, 323
PfeI GAWTC 1 cut(s) 195
PkrI GCNGC 3 cut(s) 12, 157, 208
PleI GAGTC 1 cut(s) 18
PpsI GAGTC 1 cut(s) 18
Psp124BI GAGCTC 1 cut(s) 233
PspN4I GGNNCC 1 cut(s) 90
PstI CTGCAG 1 cut(s) 160
PsuI RGATCY 2 cut(s) 88, 343
RsaI GTAC 2 cut(s) 191, 378
RsaNI GTAC 2 cut(s) 190, 377
RseI CAYNNNNRTG 1 cut(s) 384
SacI GAGCTC 1 cut(s) 233
SalI GTCGAC 1 cut(s) 307
SatI GCNGC 3 cut(s) 11, 156, 207
Sau3AI GATC 2 cut(s) 88, 343
SchI GAGTC 1 cut(s) 18
SduI GDGCHC 2 cut(s) 53, 233
SetI ASST 9 cut(s) 15, 163, 169, 233, 258, 294, 303, 342, 378
SfaNI GCATC 1 cut(s) 400
SfcI CTRYAG 1 cut(s) 156
SmiMI CAYNNNNRTG 1 cut(s) 384
Sse9I AATT 3 cut(s) 5, 319, 360
SsiI CCGC 1 cut(s) 209
SspMI CTAG 1 cut(s) 240
SstI GAGCTC 1 cut(s) 233
TaaI ACNGT 2 cut(s) 57, 121
TaqI TCGA 2 cut(s) 308, 417
TasI AATT 3 cut(s) 5, 319, 360
TatI WGTACW 1 cut(s) 189
TfiI GAWTC 1 cut(s) 195
TscAI CASTG 2 cut(s) 60, 208
TseI GCWGC 3 cut(s) 10, 155, 206
TspDTI ATGAA 2 cut(s) 265, 269
TspRI CASTG 2 cut(s) 60, 208
XagI CCTNNNNNAGG 1 cut(s) 296
XapI RAATTY 1 cut(s) 319
XmiI GTMKAC 1 cut(s) 308
XmnI GAANNNNTTC 2 cut(s) 133, 323
XspI CTAG 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.