Prupe.3G005400_v2.0.a1

Protein of unknown function (DUF952)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0015370
Physical Location & Seq
Forward (+)
323427 .. 324943
1517 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G005400.1

Sequence Viewer

Length: 384 bp
ATGGCTGCAGGTGAGGATGAATATGTGTACAGAATCAGCACAGCCAAGGAGTGGGAAGAGTTGCAGAGCTCTGGGTCTAGTTTCTGTGGAGAGCTTGACAAGACTTCTGGGTTCATTCATCTTAGCAAACTCAATCAGGTACAGTTGACATTACAGAATTTTTTCCTGAATACTAAGGTGGATCTTTACTTGCTTCAAGTTGACACCAAAAAGCTGGGCAAAGGATTAATATATGAAGTTGTTGATGGTTCCAATAGCTTCCCCCATTTCTACGGTCCATCTCGAAGTTTCAGCCCCCTTCCTCTTGATGCTGTTACAAGAGCAGAGAAGCTGTCTCTGTCAGATGGCCGATTCAGTTGTAGTATGCTGGAATCAGCCGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF952

Protein Analysis

128

Amino Acids

14.1

Weight (kDa)

5.1

Isoelectric Point (pI)

29.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015370)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01897
fragaria_vesca FvH4_1g26600
malus_domestica MD09G1287800.v1.1 MD17G1280000.v1.1
prunus_persica Prupe.3G005400_v2.0.a1
pyrus_communis pycom17g27800
rosa_chinensis RchiOBHm_Chr3g0486741
rosa_laevigata RLG00000023065
rosa_multiflora Rmu_sc0000261.1_g000016
rosa_roxburghii Rroxscaffold_6G00395640
rosa_rugosa Rorug03G0227000 Rorug03G0227000
rosa_samantha Rh3BG311500 Rh3CG310800 Rh3DG307300
rosa_wichuraiana Rw3G024610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 51
AciI CCGC 1 cut(s) 378
AclWI GGATC 1 cut(s) 189
AcoI YGGCCR 1 cut(s) 346
AcsI RAATTY 1 cut(s) 157
AfaI GTAC 2 cut(s) 29, 141
AfiI CCNNNNNNNGG 1 cut(s) 51
AgsI TTSAA 1 cut(s) 197
AluBI AGCT 5 cut(s) 69, 94, 214, 258, 331
AluI AGCT 5 cut(s) 69, 94, 214, 258, 331
Alw21I GWGCWC 1 cut(s) 71
Alw26I GTCTC 1 cut(s) 339
AlwI GGATC 1 cut(s) 189
AoxI GGCC 1 cut(s) 346
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 157
AseI ATTAAT 1 cut(s) 227
Asp700I GAANNNNTTC 1 cut(s) 161
AspS9I GGNCC 1 cut(s) 275
AsuHPI GGTGA 1 cut(s) 23
AvaII GGWCC 1 cut(s) 275
BanII GRGCYC 1 cut(s) 71
Bbv12I GWGCWC 1 cut(s) 71
BccI CCATC 3 cut(s) 239, 286, 338
BcoDI GTCTC 1 cut(s) 339
BfaI CTAG 1 cut(s) 78
BfmI CTRYAG 1 cut(s) 6
BisI GCNGC 2 cut(s) 6, 378
BlsI GCNGC 2 cut(s) 7, 379
Bme18I GGWCC 1 cut(s) 275
BmgT120I GGNCC 1 cut(s) 275
BmiI GGNNCC 1 cut(s) 250
BmsI GCATC 1 cut(s) 298
BsaJI CCNNGG 1 cut(s) 45
Bsc4I CCNNNNNNNGG 1 cut(s) 51
BseDI CCNNGG 1 cut(s) 45
BseGI GGATG 1 cut(s) 22
BseLI CCNNNNNNNGG 1 cut(s) 51
BseYI CCCAGC 1 cut(s) 214
BshFI GGCC 1 cut(s) 348
BsiHKAI GWGCWC 1 cut(s) 71
BslI CCNNNNNNNGG 1 cut(s) 51
BsmAI GTCTC 1 cut(s) 339
BsnI GGCC 1 cut(s) 348
Bsp1286I GDGCHC 1 cut(s) 71
Bsp1407I TGTACA 1 cut(s) 27
Bsp143I GATC 1 cut(s) 181
BspACI CCGC 1 cut(s) 378
BspANI GGCC 1 cut(s) 348
BspLI GGNNCC 1 cut(s) 250
BspMAI CTGCAG 1 cut(s) 10
BspPI GGATC 1 cut(s) 189
BsrGI TGTACA 1 cut(s) 27
BssECI CCNNGG 1 cut(s) 45
BssMI GATC 1 cut(s) 181
BssT1I CCWWGG 1 cut(s) 45
Bst4CI ACNGT 2 cut(s) 144, 275
Bst6I CTCTTC 1 cut(s) 51
BstAUI TGTACA 1 cut(s) 27
BstDEI CTNAG 2 cut(s) 122, 174
BstF5I GGATG 1 cut(s) 22
BstKTI GATC 1 cut(s) 184
BstMAI GTCTC 1 cut(s) 339
BstMBI GATC 1 cut(s) 181
BstSFI CTRYAG 1 cut(s) 6
BstX2I RGATCY 1 cut(s) 181
BstXI CCANNNNNNTGG 1 cut(s) 214
BstYI RGATCY 1 cut(s) 181
BsuRI GGCC 1 cut(s) 348
BtsCI GGATG 1 cut(s) 22
Cfr13I GGNCC 1 cut(s) 275
Csp6I GTAC 2 cut(s) 28, 140
CviQI GTAC 2 cut(s) 28, 140
DdeI CTNAG 2 cut(s) 122, 174
DpnI GATC 1 cut(s) 183
DpnII GATC 1 cut(s) 181
EaeI YGGCCR 1 cut(s) 346
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Ecl136II GAGCTC 1 cut(s) 69
Eco130I CCWWGG 1 cut(s) 45
Eco24I GRGCYC 1 cut(s) 71
Eco47I GGWCC 1 cut(s) 275
Eco53kI GAGCTC 1 cut(s) 69
EcoICRI GAGCTC 1 cut(s) 69
EcoT14I CCWWGG 1 cut(s) 45
EcoT38I GRGCYC 1 cut(s) 71
ErhI CCWWGG 1 cut(s) 45
FaiI YATR 4 cut(s) 24, 232, 234, 365
Fnu4HI GCNGC 2 cut(s) 6, 378
FokI GGATG 1 cut(s) 29
FriOI GRGCYC 1 cut(s) 71
Fsp4HI GCNGC 2 cut(s) 6, 378
FspBI CTAG 1 cut(s) 78
GluI GCNGC 2 cut(s) 6, 378
GsaI CCCAGC 1 cut(s) 218
HaeIII GGCC 1 cut(s) 348
HincII GTYRAC 2 cut(s) 147, 202
HindII GTYRAC 2 cut(s) 147, 202
HinfI GANTC 3 cut(s) 33, 351, 371
HphI GGTGA 1 cut(s) 23
Hpy166II GTNNAC 3 cut(s) 28, 147, 202
Hpy188I TCNGA 1 cut(s) 343
Hpy188III TCNNGA 3 cut(s) 166, 282, 305
Hpy8I GTNNAC 3 cut(s) 28, 147, 202
HpyAV CCTTC 1 cut(s) 308
HpyCH4III ACNGT 2 cut(s) 144, 275
HpyCH4V TGCA 2 cut(s) 8, 64
HpyF3I CTNAG 2 cut(s) 122, 174
Kzo9I GATC 1 cut(s) 181
LpnPI CCDG 6 cut(s) 57, 93, 122, 179, 200, 353
LweI GCATC 1 cut(s) 298
MaeI CTAG 1 cut(s) 78
MaeIII GTNAC 1 cut(s) 313
MalI GATC 1 cut(s) 183
MboI GATC 1 cut(s) 181
MboII GAAGA 1 cut(s) 68
MflI RGATCY 1 cut(s) 181
MhlI GDGCHC 1 cut(s) 71
MluCI AATT 1 cut(s) 157
MnlI CCTC 2 cut(s) 7, 312
MroXI GAANNNNTTC 1 cut(s) 161
MseI TTAA 2 cut(s) 227, 382
NdeII GATC 1 cut(s) 181
NlaIV GGNNCC 1 cut(s) 250
PdmI GAANNNNTTC 1 cut(s) 161
PfeI GAWTC 3 cut(s) 33, 351, 371
PflMI CCANNNNNTGG 1 cut(s) 51
PkrI GCNGC 2 cut(s) 7, 379
PshBI ATTAAT 1 cut(s) 227
Psp124BI GAGCTC 1 cut(s) 71
PspFI CCCAGC 1 cut(s) 214
PspN4I GGNNCC 1 cut(s) 250
PspPI GGNCC 1 cut(s) 275
PstI CTGCAG 1 cut(s) 10
PsuI RGATCY 1 cut(s) 181
RsaI GTAC 2 cut(s) 29, 141
RsaNI GTAC 2 cut(s) 28, 140
SacI GAGCTC 1 cut(s) 71
SaqAI TTAA 2 cut(s) 227, 382
SatI GCNGC 2 cut(s) 6, 378
Sau3AI GATC 1 cut(s) 181
Sau96I GGNCC 1 cut(s) 275
SduI GDGCHC 1 cut(s) 71
SetI ASST 8 cut(s) 13, 71, 96, 141, 180, 216, 260, 333
SfaNI GCATC 1 cut(s) 298
SfcI CTRYAG 1 cut(s) 6
SinI GGWCC 1 cut(s) 275
Sse9I AATT 1 cut(s) 157
SsiI CCGC 1 cut(s) 378
SspMI CTAG 1 cut(s) 78
SstI GAGCTC 1 cut(s) 71
StyI CCWWGG 1 cut(s) 45
TaaI ACNGT 2 cut(s) 144, 275
TaqI TCGA 1 cut(s) 283
TasI AATT 1 cut(s) 157
TatI WGTACW 1 cut(s) 27
TauI GCSGC 1 cut(s) 380
TfiI GAWTC 3 cut(s) 33, 351, 371
Tru1I TTAA 2 cut(s) 227, 382
Tru9I TTAA 2 cut(s) 227, 382
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 4 cut(s) 33, 103, 107, 249
Van91I CCANNNNNTGG 1 cut(s) 51
VpaK11BI GGWCC 1 cut(s) 275
VspI ATTAAT 1 cut(s) 227
XapI RAATTY 1 cut(s) 157
XmnI GAANNNNTTC 1 cut(s) 161
XspI CTAG 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.