MD17G1280000.v1.1

Protein of unknown function (DUF952)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0015370
Physical Location & Seq
Reverse (-)
34033612 .. 34036300
2689 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1280000.v1.1.491

Sequence Viewer

Length: 447 bp
ATGAGCAGTAGCGTCCAAATGGTTGGTGGAAGACTTTCAATCTCCAGAGCAATGGCTGCAGGTGGAGGTGAAGGGATGGAAGAATATGTGTACAGAATCAGCACTGCTGCGGAGTGGGGAGAGTTGCAGAGCTCTGGCTCTATTTTTGGTGGAGAGCTGGACAAGAAATCTGGGTTCATTCATCTTAGCAACCTCAATCAGGTAAAGTCGACATTGCAGAATTTTTTCGTGAATACGAAGGTGGATCTTTACTTGCTTCAAATTGACACCAATAAGCTAGGTGAAGGGTTAGTATATGAAGTTGTTGATGGTTCCAATAGCTTCCCCCATTTCTATGGTCCATCTCGAAGTTTCATTCCTCTTCCTCTTGATGCTGTTACAAAAGCAGAGAAGCTGCATCTGTCGGGTGGCCAATTCAGTTGCAGTATGCTGGAACGAGTCGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF952

Protein Analysis

149

Amino Acids

16.03

Weight (kDa)

5.57

Isoelectric Point (pI)

31.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF952 PF06108 33 - 128 1.1e-24 Protein of unknown function (DUF952)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015370)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01897
fragaria_vesca FvH4_1g26600
malus_domestica MD09G1287800.v1.1 MD17G1280000.v1.1
prunus_persica Prupe.3G005400_v2.0.a1
pyrus_communis pycom17g27800
rosa_chinensis RchiOBHm_Chr3g0486741
rosa_laevigata RLG00000023065
rosa_multiflora Rmu_sc0000261.1_g000016
rosa_roxburghii Rroxscaffold_6G00395640
rosa_rugosa Rorug03G0227000 Rorug03G0227000
rosa_samantha Rh3BG311500 Rh3CG310800 Rh3DG307300
rosa_wichuraiana Rw3G024610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 50
Acc36I ACCTGC 1 cut(s) 50
AccI GTMKAC 1 cut(s) 209
AciI CCGC 1 cut(s) 110
AclWI GGATC 1 cut(s) 252
AcoI YGGCCR 1 cut(s) 409
AcsI RAATTY 1 cut(s) 220
AfaI GTAC 1 cut(s) 92
AfiI CCNNNNNNNGG 1 cut(s) 199
AgsI TTSAA 2 cut(s) 39, 260
AluBI AGCT 5 cut(s) 132, 157, 277, 321, 394
AluI AGCT 5 cut(s) 132, 157, 277, 321, 394
Alw21I GWGCWC 1 cut(s) 134
AlwI GGATC 1 cut(s) 252
AoxI GGCC 1 cut(s) 409
ApeKI GCWGC 3 cut(s) 56, 107, 394
ApoI RAATTY 1 cut(s) 220
Asp700I GAANNNNTTC 2 cut(s) 34, 224
AspS9I GGNCC 1 cut(s) 338
AsuHPI GGTGA 2 cut(s) 80, 293
AvaII GGWCC 1 cut(s) 338
BalI TGGCCA 1 cut(s) 411
BanII GRGCYC 1 cut(s) 134
BbsI GAAGAC 1 cut(s) 37
Bbv12I GWGCWC 1 cut(s) 134
BbvI GCAGC 3 cut(s) 43, 94, 381
BccI CCATC 3 cut(s) 70, 302, 349
BfaI CTAG 1 cut(s) 278
BfmI CTRYAG 1 cut(s) 57
BfuAI ACCTGC 1 cut(s) 50
BisI GCNGC 3 cut(s) 57, 108, 395
BlsI GCNGC 3 cut(s) 58, 109, 396
Bme18I GGWCC 1 cut(s) 338
BmgT120I GGNCC 1 cut(s) 338
BmiI GGNNCC 1 cut(s) 313
BmsI GCATC 2 cut(s) 361, 406
BpiI GAAGAC 1 cut(s) 37
BpmI CTGGAG 1 cut(s) 28
Bsc4I CCNNNNNNNGG 1 cut(s) 199
Bse3DI GCAATG 2 cut(s) 57, 212
BseGI GGATG 1 cut(s) 81
BseLI CCNNNNNNNGG 1 cut(s) 199
BseMI GCAATG 2 cut(s) 57, 212
BseXI GCAGC 3 cut(s) 43, 94, 381
BshFI GGCC 1 cut(s) 411
BsiHKAI GWGCWC 1 cut(s) 134
BslI CCNNNNNNNGG 1 cut(s) 199
BsnI GGCC 1 cut(s) 411
Bsp1286I GDGCHC 1 cut(s) 134
Bsp1407I TGTACA 1 cut(s) 90
Bsp143I GATC 1 cut(s) 244
BspACI CCGC 1 cut(s) 110
BspANI GGCC 1 cut(s) 411
BspLI GGNNCC 1 cut(s) 313
BspMAI CTGCAG 1 cut(s) 61
BspMI ACCTGC 1 cut(s) 50
BspPI GGATC 1 cut(s) 252
BsrDI GCAATG 2 cut(s) 57, 212
BsrGI TGTACA 1 cut(s) 90
BssMI GATC 1 cut(s) 244
Bst6I CTCTTC 1 cut(s) 366
BstAPI GCANNNNNTGC 1 cut(s) 56
BstAUI TGTACA 1 cut(s) 90
BstDEI CTNAG 1 cut(s) 185
BstENI CCTNNNNNAGG 1 cut(s) 197
BstF5I GGATG 1 cut(s) 81
BstKTI GATC 1 cut(s) 247
BstMBI GATC 1 cut(s) 244
BstMWI GCNNNNNNNGC 1 cut(s) 56
BstSFI CTRYAG 1 cut(s) 57
BstV1I GCAGC 3 cut(s) 43, 94, 381
BstV2I GAAGAC 1 cut(s) 37
BstX2I RGATCY 1 cut(s) 244
BstXI CCANNNNNNTGG 3 cut(s) 23, 52, 335
BstYI RGATCY 1 cut(s) 244
BsuRI GGCC 1 cut(s) 411
BtsCI GGATG 1 cut(s) 81
BtsI GCAGTG 1 cut(s) 102
BtsIMutI CAGTG 1 cut(s) 102
BveI ACCTGC 1 cut(s) 50
Cfr13I GGNCC 1 cut(s) 338
Csp6I GTAC 1 cut(s) 91
CviJI RGCY 8 cut(s) 56, 132, 138, 157, 277, 321, 394, 411
CviKI_1 RGCY 8 cut(s) 56, 132, 138, 157, 277, 321, 394, 411
CviQI GTAC 1 cut(s) 91
DdeI CTNAG 1 cut(s) 185
DpnI GATC 1 cut(s) 246
DpnII GATC 1 cut(s) 244
EaeI YGGCCR 1 cut(s) 409
Eam1104I CTCTTC 1 cut(s) 366
EarI CTCTTC 1 cut(s) 366
Ecl136II GAGCTC 1 cut(s) 132
Eco24I GRGCYC 1 cut(s) 134
Eco47I GGWCC 1 cut(s) 338
Eco53kI GAGCTC 1 cut(s) 132
EcoICRI GAGCTC 1 cut(s) 132
EcoNI CCTNNNNNAGG 1 cut(s) 197
EcoT38I GRGCYC 1 cut(s) 134
FaiI YATR 5 cut(s) 87, 295, 297, 336, 428
FblI GTMKAC 1 cut(s) 209
Fnu4HI GCNGC 3 cut(s) 57, 108, 395
FokI GGATG 1 cut(s) 88
FriOI GRGCYC 1 cut(s) 134
Fsp4HI GCNGC 3 cut(s) 57, 108, 395
FspBI CTAG 1 cut(s) 278
GluI GCNGC 3 cut(s) 57, 108, 395
GsuI CTGGAG 1 cut(s) 28
HaeIII GGCC 1 cut(s) 411
HincII GTYRAC 1 cut(s) 210
HindII GTYRAC 1 cut(s) 210
HinfI GANTC 2 cut(s) 96, 438
HphI GGTGA 2 cut(s) 80, 293
Hpy166II GTNNAC 2 cut(s) 91, 210
Hpy188III TCNNGA 4 cut(s) 45, 229, 345, 368
Hpy8I GTNNAC 2 cut(s) 91, 210
HpyAV CCTTC 3 cut(s) 65, 232, 278
HpyCH4V TGCA 5 cut(s) 59, 127, 217, 397, 423
HpyF10VI GCNNNNNNNGC 1 cut(s) 56
HpyF3I CTNAG 1 cut(s) 185
Kzo9I GATC 1 cut(s) 244
LpnPI CCDG 7 cut(s) 45, 58, 120, 143, 156, 185, 416
Lsp1109I GCAGC 3 cut(s) 43, 94, 381
LweI GCATC 2 cut(s) 361, 406
MaeI CTAG 1 cut(s) 278
MaeIII GTNAC 1 cut(s) 376
MalI GATC 1 cut(s) 246
MboI GATC 1 cut(s) 244
MboII GAAGA 3 cut(s) 42, 92, 353
MflI RGATCY 1 cut(s) 244
MhlI GDGCHC 1 cut(s) 134
MlsI TGGCCA 1 cut(s) 411
MluCI AATT 3 cut(s) 220, 261, 413
MluNI TGGCCA 1 cut(s) 411
MlyI GAGTC 1 cut(s) 447
MnlI CCTC 4 cut(s) 59, 203, 369, 375
Mox20I TGGCCA 1 cut(s) 411
MroXI GAANNNNTTC 2 cut(s) 34, 224
MscI TGGCCA 1 cut(s) 411
MseI TTAA 1 cut(s) 445
MslI CAYNNNNRTG 1 cut(s) 333
Msp20I TGGCCA 1 cut(s) 411
MwoI GCNNNNNNNGC 1 cut(s) 56
NdeII GATC 1 cut(s) 244
NlaIV GGNNCC 1 cut(s) 313
PaqCI CACCTGC 1 cut(s) 50
PdmI GAANNNNTTC 2 cut(s) 34, 224
PfeI GAWTC 1 cut(s) 96
PkrI GCNGC 3 cut(s) 58, 109, 396
PleI GAGTC 1 cut(s) 446
PpsI GAGTC 1 cut(s) 446
Psp124BI GAGCTC 1 cut(s) 134
PspN4I GGNNCC 1 cut(s) 313
PspPI GGNCC 1 cut(s) 338
PstI CTGCAG 1 cut(s) 61
PsuI RGATCY 1 cut(s) 244
RsaI GTAC 1 cut(s) 92
RsaNI GTAC 1 cut(s) 91
RseI CAYNNNNRTG 1 cut(s) 333
SacI GAGCTC 1 cut(s) 134
SalI GTCGAC 1 cut(s) 208
SaqAI TTAA 1 cut(s) 445
SatI GCNGC 3 cut(s) 57, 108, 395
Sau3AI GATC 1 cut(s) 244
Sau96I GGNCC 1 cut(s) 338
SchI GAGTC 1 cut(s) 447
SduI GDGCHC 1 cut(s) 134
SfaNI GCATC 2 cut(s) 361, 406
SfcI CTRYAG 1 cut(s) 57
SinI GGWCC 1 cut(s) 338
SmiMI CAYNNNNRTG 1 cut(s) 333
Sse9I AATT 3 cut(s) 220, 261, 413
SsiI CCGC 1 cut(s) 110
SspMI CTAG 1 cut(s) 278
SstI GAGCTC 1 cut(s) 134
TaqI TCGA 2 cut(s) 209, 346
TasI AATT 3 cut(s) 220, 261, 413
TatI WGTACW 1 cut(s) 90
TfiI GAWTC 1 cut(s) 96
Tru1I TTAA 1 cut(s) 445
Tru9I TTAA 1 cut(s) 445
TscAI CASTG 1 cut(s) 109
TseI GCWGC 3 cut(s) 56, 107, 394
TspDTI ATGAA 4 cut(s) 166, 170, 312, 343
TspRI CASTG 1 cut(s) 109
VpaK11BI GGWCC 1 cut(s) 338
XagI CCTNNNNNAGG 1 cut(s) 197
XapI RAATTY 1 cut(s) 220
XcmI CCANNNNNNNNNTGG 1 cut(s) 23
XmiI GTMKAC 1 cut(s) 209
XmnI GAANNNNTTC 2 cut(s) 34, 224
XspI CTAG 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.