Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014324

Physical Location & Seq

Genomic Coordinates Forward (+)

821546 .. 823569

Gene Structure 2024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G01900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGCGGCGTCAATGACGAAACCCATCTCAATAACTTCTCTCGGTTTCTATTCTGATCGAAAGAACATTGCTTTCTCTGATTGCATTTCGATTTGTTCTGGATTCAGACATTCCCGACCATCTTGCCTCGATTTGGTCACAAAGTCACCGAGTAATAACAGTCGTGTTTTACCTGTCGTTAGTGCCCAAATATCTTCTGATTATATTCCAGACTCGAAATTTTACAAGGTGGAAGCAATTGTCAGACCATGGAGAATCCAGCAAGTTTCATCGGCTTTACTGAAAATCGGGATTCGAGGTGTTACTGTTTCTGATGTGAGAGGGTTTGGTGCACAAGGAGGTTCTACCGAGAGACACGGTGGCTCTGAGTTCTCGGAAGACAAATTTGTTGCTAAAGTTAAGATGGAAATCGTTGTTAAGAAAGACCAAGTGGAATCTGTAATCAACACAATAATTGAAGGAGCAAGGACAGGAGAGATTGGTGATGGCAAGATTTTTGTTTTGCCTGTGTCAGATGTCATAAGAGTTAGGACAGGTGAGCGTGGGGAGAAAGCAGAGAAGATGACTGGTGATATGCTTTCACCGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0000820 GO:0000821 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006521 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009628 GO:0009718 GO:0009743 GO:0009744 GO:0009812 GO:0009813 GO:0009889 GO:0010033 GO:0010307 GO:0010565 GO:0017076 GO:0019207 GO:0019216 GO:0019217 GO:0019220 GO:0019222 GO:0030234 GO:0030554 GO:0031323 GO:0031326 GO:0031976 GO:0031984 GO:0032553 GO:0032555 GO:0032559 GO:0033238 GO:0034285 GO:0035639 GO:0036094 GO:0042221 GO:0042304 GO:0042325 GO:0042440 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046283 GO:0046872 GO:0046890 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0062012 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0090368 GO:0097159 GO:0097367 GO:0098772 GO:1900079 GO:1901265 GO:1901363 GO:1901576 GO:1901700 GO:2000013 GO:2000282

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

P-II

Protein Analysis

196

Amino Acids

21.28

Weight (kDa)

9.17

Isoelectric Point (pI)

40.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
P-II	PF00543	76 - 180	3.3e-29	Nitrogen regulatory protein P-II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

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Orthologous Genes (Group: OG0014324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01900
fragaria_vesca	FvH4_1g26590 FvH4_1g26590
malus_domestica	MD09G1287900.v1.1 MD17G1280100.v1.1
prunus_persica	Prupe.3G005300_v2.0.a1
pyrus_communis	pycom09g19530 pycom17g27810
rosa_chinensis	RchiOBHm_Chr3g0486731
rosa_laevigata	RLG00000023066
rosa_roxburghii	Rroxscaffold_6G00395650
rosa_rugosa	Rorug03G0226900
rosa_samantha	Rh3AG276600 Rh3BG311400 Rh3CG310700 Rh3DG307200
rosa_wichuraiana	Rw3G024600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	5
AcsI	RAATTY	2 cut(s)	218, 383
AcyI	GRCGYC	1 cut(s)	8
AfiI	CCNNNNNNNGG	1 cut(s)	133
AgsI	TTSAA	1 cut(s)	458
Alw21I	GWGCWC	1 cut(s)	334
Alw26I	GTCTC	1 cut(s)	346
Alw44I	GTGCAC	1 cut(s)	330
ApaLI	GTGCAC	1 cut(s)	330
ApoI	RAATTY	2 cut(s)	218, 383
AsuHPI	GGTGA	5 cut(s)	138, 494, 548, 573, 581
BaeGI	GKGCMC	2 cut(s)	187, 334
BbsI	GAAGAC	1 cut(s)	384
Bbv12I	GWGCWC	1 cut(s)	334
BccI	CCATC	4 cut(s)	32, 127, 397, 479
BcgI	CGANNNNNNTGC	2 cut(s)	105, 139
BcoDI	GTCTC	1 cut(s)	346
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
BpiI	GAAGAC	1 cut(s)	384
BsaBI	GATNNNNATC	1 cut(s)	407
BsaHI	GRCGYC	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	248
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
Bse1I	ACTGG	1 cut(s)	571
Bse3DI	GCAATG	1 cut(s)	66
Bse8I	GATNNNNATC	1 cut(s)	407
BseDI	CCNNGG	1 cut(s)	248
BseJI	GATNNNNATC	1 cut(s)	407
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseMI	GCAATG	1 cut(s)	66
BseMII	CTCAG	1 cut(s)	357
BseNI	ACTGG	1 cut(s)	571
BseSI	GKGCMC	2 cut(s)	187, 334
BsiHKAI	GWGCWC	1 cut(s)	334
BslI	CCNNNNNNNGG	1 cut(s)	133
BsmAI	GTCTC	1 cut(s)	346
Bsp1286I	GDGCHC	2 cut(s)	187, 334
Bsp143I	GATC	1 cut(s)	55
Bsp19I	CCATGG	1 cut(s)	248
BspACI	CCGC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	358
BsrDI	GCAATG	1 cut(s)	66
BsrI	ACTGG	1 cut(s)	571
BssECI	CCNNGG	1 cut(s)	248
BssMI	GATC	1 cut(s)	55
BssNI	GRCGYC	1 cut(s)	8
BssT1I	CCWWGG	1 cut(s)	248
Bst4CI	ACNGT	4 cut(s)	161, 307, 359, 585
BstACI	GRCGYC	1 cut(s)	8
BstDEI	CTNAG	2 cut(s)	366, 588
BstDSI	CCRYGG	1 cut(s)	248
BstKTI	GATC	1 cut(s)	58
BstMAI	GTCTC	1 cut(s)	346
BstMBI	GATC	1 cut(s)	55
BstSLI	GKGCMC	2 cut(s)	187, 334
BstV2I	GAAGAC	1 cut(s)	384
BtgI	CCRYGG	1 cut(s)	248
CviAII	CATG	1 cut(s)	249
CviJI	RGCY	2 cut(s)	275, 363
CviKI_1	RGCY	2 cut(s)	275, 363
DdeI	CTNAG	2 cut(s)	366, 588
DpnI	GATC	1 cut(s)	57
DpnII	GATC	1 cut(s)	55
Eco130I	CCWWGG	1 cut(s)	248
EcoT14I	CCWWGG	1 cut(s)	248
ErhI	CCWWGG	1 cut(s)	248
FaeI	CATG	1 cut(s)	252
FaiI	YATR	4 cut(s)	204, 250, 521, 575
FatI	CATG	1 cut(s)	248
Fnu4HI	GCNGC	1 cut(s)	6
Fsp4HI	GCNGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	6
Hin1I	GRCGYC	1 cut(s)	8
Hin1II	CATG	1 cut(s)	252
HinfI	GANTC	5 cut(s)	102, 212, 255, 292, 434
HphI	GGTGA	5 cut(s)	138, 494, 548, 573, 581
Hpy166II	GTNNAC	1 cut(s)	332
Hpy188I	TCNGA	9 cut(s)	55, 79, 107, 199, 245, 313, 367, 376, 514
Hpy188III	TCNNGA	4 cut(s)	99, 114, 209, 289
Hpy8I	GTNNAC	1 cut(s)	332
HpyAV	CCTTC	1 cut(s)	452
HpyCH4III	ACNGT	4 cut(s)	161, 307, 359, 585
HpyCH4V	TGCA	2 cut(s)	84, 332
HpyF3I	CTNAG	2 cut(s)	366, 588
Hsp92I	GRCGYC	1 cut(s)	8
Hsp92II	CATG	1 cut(s)	252
Kzo9I	GATC	1 cut(s)	55
LmnI	GCTCC	1 cut(s)	461
LpnPI	CCDG	8 cut(s)	84, 186, 222, 272, 456, 519, 519, 552
MaeIII	GTNAC	3 cut(s)	136, 144, 301
MalI	GATC	1 cut(s)	57
MboI	GATC	1 cut(s)	55
MboII	GAAGA	3 cut(s)	186, 389, 571
MfeI	CAATTG	1 cut(s)	237
MhlI	GDGCHC	2 cut(s)	187, 334
MluCI	AATT	4 cut(s)	218, 237, 383, 453
MlyI	GAGTC	1 cut(s)	206
MnlI	CCTC	4 cut(s)	137, 290, 314, 332
MseI	TTAA	2 cut(s)	399, 417
MunI	CAATTG	1 cut(s)	237
NcoI	CCATGG	1 cut(s)	248
NdeII	GATC	1 cut(s)	55
NlaIII	CATG	1 cut(s)	252
NmuCI	GTSAC	2 cut(s)	136, 144
PfeI	GAWTC	4 cut(s)	102, 255, 292, 434
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	206
SaqAI	TTAA	2 cut(s)	399, 417
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	1 cut(s)	55
SchI	GAGTC	1 cut(s)	206
SduI	GDGCHC	2 cut(s)	187, 334
SetI	ASST	5 cut(s)	175, 231, 301, 343, 538
Sse9I	AATT	4 cut(s)	218, 237, 383, 453
SsiI	CCGC	1 cut(s)	5
StyI	CCWWGG	1 cut(s)	248
TaaI	ACNGT	4 cut(s)	161, 307, 359, 585
TaqI	TCGA	5 cut(s)	58, 89, 129, 215, 295
TasI	AATT	4 cut(s)	218, 237, 383, 453
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	4 cut(s)	102, 255, 292, 434
Tru1I	TTAA	2 cut(s)	399, 417
Tru9I	TTAA	2 cut(s)	399, 417
TseFI	GTSAC	2 cut(s)	136, 144
Tsp45I	GTSAC	2 cut(s)	136, 144
TspDTI	ATGAA	1 cut(s)	258
VneI	GTGCAC	1 cut(s)	330
XapI	RAATTY	2 cut(s)	218, 383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.