Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0014324

Physical Location & Seq

Genomic Coordinates Forward (+)

17621164 .. 17623894

Gene Structure 2731 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023066

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGCTACAATGATGAAACCAGGCGTCATTTGCACCCTCAATTCTCACCTCAACGAGCTTCCTCTTTTAGATTCGAGCTCGATCCATCTAAAGCTCAGAGAATTTGGGTTCTCTCACCGCAATGTGAATCTAAAACAGGCCAGAAATGCGTCACTTGTTCCCGTCATAAGAGCCCAGAGTTCCCCTGATTATTTCCCGGACTCCAAGTTTTACAAAGTGGAAGCAATTCTAAGGCCTTGGAGAGTTCCGCAGGTTTCTGCGGCCCTACTTAAAATCGGTATCCGCGGTGTTACCATATCTGATGTTCGGGGCTTTGGTGCTCAAGGTGGTTCAAAAGAGAGACAGGGTGGCTCTGAATTTGCTGAAGACAATTATGTTGCTAAAGTTAAAATGGAGATTGTAGTGATCAAAGACCAGGTTGAAGCAGTAGTTGGCAAGATAATTGAGGAGGCAAGAACTGGAGAAATTGGTGATGGCAAGATTTTCTTGATGCCGGTCTCAGACGTAATTAGAGTTCGCACTGGGGAGCGCGGAGAAAAGGCGGAGAAGATGACAGGAGGGCTATCTGACACATCCTCTACCTCTGCTGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0000820 GO:0000821 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006521 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009628 GO:0009718 GO:0009743 GO:0009744 GO:0009812 GO:0009813 GO:0009889 GO:0010033 GO:0010307 GO:0010565 GO:0017076 GO:0019207 GO:0019216 GO:0019217 GO:0019220 GO:0019222 GO:0030234 GO:0030554 GO:0031323 GO:0031326 GO:0031976 GO:0031984 GO:0032553 GO:0032555 GO:0032559 GO:0033238 GO:0034285 GO:0035639 GO:0036094 GO:0042221 GO:0042304 GO:0042325 GO:0042440 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046283 GO:0046872 GO:0046890 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0062012 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0090368 GO:0097159 GO:0097367 GO:0098772 GO:1900079 GO:1901265 GO:1901363 GO:1901576 GO:1901700 GO:2000013 GO:2000282

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

P-II

Protein Analysis

198

Amino Acids

21.45

Weight (kDa)

9.21

Isoelectric Point (pI)

39.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
P-II	PF00543	72 - 176	3e-27	Nitrogen regulatory protein P-II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0014324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01900
fragaria_vesca	FvH4_1g26590 FvH4_1g26590
malus_domestica	MD09G1287900.v1.1 MD17G1280100.v1.1
prunus_persica	Prupe.3G005300_v2.0.a1
pyrus_communis	pycom09g19530 pycom17g27810
rosa_chinensis	RchiOBHm_Chr3g0486731
rosa_laevigata	RLG00000023066
rosa_roxburghii	Rroxscaffold_6G00395650
rosa_rugosa	Rorug03G0226900
rosa_samantha	Rh3AG276600 Rh3BG311400 Rh3CG310700 Rh3DG307200
rosa_wichuraiana	Rw3G024600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	241
AccII	CGCG	2 cut(s)	285, 531
AciI	CCGC	7 cut(s)	118, 248, 260, 283, 285, 531, 542
AclWI	GGATC	1 cut(s)	76
AcsI	RAATTY	2 cut(s)	101, 356
AcuI	CTGAAG	1 cut(s)	384
AcyI	GRCGYC	1 cut(s)	24
AgsI	TTSAA	2 cut(s)	333, 422
AjnI	CCWGG	2 cut(s)	19, 414
AjuI	GAANNNNNNNTTGG	2 cut(s)	414, 446
AluBI	AGCT	3 cut(s)	58, 78, 94
AluI	AGCT	3 cut(s)	58, 78, 94
Alw21I	GWGCWC	2 cut(s)	80, 322
Alw26I	GTCTC	2 cut(s)	334, 502
AlwI	GGATC	1 cut(s)	76
AoxI	GGCC	3 cut(s)	138, 233, 261
ApeKI	GCWGC	1 cut(s)	587
ApoI	RAATTY	2 cut(s)	101, 356
Asp700I	GAANNNNTTC	1 cut(s)	225
AspLEI	GCGC	1 cut(s)	531
AspS9I	GGNCC	1 cut(s)	262
AsuC2I	CCSGG	1 cut(s)	197
AsuHPI	GGTGA	3 cut(s)	38, 107, 482
BanII	GRGCYC	2 cut(s)	80, 175
BbsI	GAAGAC	1 cut(s)	372
Bbv12I	GWGCWC	2 cut(s)	80, 322
BbvI	GCAGC	1 cut(s)	574
BccI	CCATC	2 cut(s)	93, 467
BciT130I	CCWGG	2 cut(s)	21, 416
BciVI	GTATCC	1 cut(s)	290
BclI	TGATCA	1 cut(s)	405
BcnI	CCSGG	1 cut(s)	197
BcoDI	GTCTC	2 cut(s)	334, 502
BfuAI	ACCTGC	1 cut(s)	241
BfuI	GTATCC	1 cut(s)	290
BisI	GCNGC	2 cut(s)	261, 588
BlsI	GCNGC	2 cut(s)	262, 589
Bme1390I	CCNGG	3 cut(s)	21, 197, 416
BmgT120I	GGNCC	1 cut(s)	262
BmrFI	CCNGG	3 cut(s)	21, 197, 416
BmrI	ACTGGG	1 cut(s)	531
BmsI	GCATC	1 cut(s)	480
BmuI	ACTGGG	1 cut(s)	531
BpiI	GAAGAC	1 cut(s)	372
BpmI	CTGGAG	1 cut(s)	480
BpuEI	CTTGAG	1 cut(s)	306
BpuMI	CCSGG	1 cut(s)	197
BsaHI	GRCGYC	1 cut(s)	24
BsaI	GGTCTC	1 cut(s)	502
BsaJI	CCNNGG	2 cut(s)	236, 283
Bse118I	RCCGGY	1 cut(s)	493
Bse1I	ACTGG	2 cut(s)	463, 526
Bse3DI	GCAATG	1 cut(s)	127
BseBI	CCWGG	2 cut(s)	21, 416
BseDI	CCNNGG	2 cut(s)	236, 283
BseGI	GGATG	1 cut(s)	572
BseMI	GCAATG	1 cut(s)	127
BseMII	CTCAG	2 cut(s)	109, 513
BseNI	ACTGG	2 cut(s)	463, 526
BseRI	GAGGAG	1 cut(s)	461
BseXI	GCAGC	1 cut(s)	574
Bsh1236I	CGCG	2 cut(s)	285, 531
BshFI	GGCC	3 cut(s)	140, 235, 263
BsiHKAI	GWGCWC	2 cut(s)	80, 322
BsiSI	CCGG	2 cut(s)	197, 494
BsmAI	GTCTC	2 cut(s)	334, 502
BsnI	GGCC	3 cut(s)	140, 235, 263
Bso31I	GGTCTC	1 cut(s)	502
Bsp1286I	GDGCHC	3 cut(s)	80, 175, 322
Bsp143I	GATC	2 cut(s)	81, 405
BspACI	CCGC	7 cut(s)	118, 248, 260, 283, 285, 531, 542
BspANI	GGCC	3 cut(s)	140, 235, 263
BspCNI	CTCAG	2 cut(s)	108, 512
BspFNI	CGCG	2 cut(s)	285, 531
BspMI	ACCTGC	1 cut(s)	241
BspPI	GGATC	1 cut(s)	76
BspTNI	GGTCTC	1 cut(s)	502
BsrDI	GCAATG	1 cut(s)	127
BsrFI	RCCGGY	1 cut(s)	493
BsrI	ACTGG	2 cut(s)	463, 526
BssAI	RCCGGY	1 cut(s)	493
BssECI	CCNNGG	2 cut(s)	236, 283
BssMI	GATC	2 cut(s)	81, 405
BssNI	GRCGYC	1 cut(s)	24
BssT1I	CCWWGG	1 cut(s)	236
Bst2UI	CCWGG	2 cut(s)	21, 416
BstACI	GRCGYC	1 cut(s)	24
BstDEI	CTNAG	3 cut(s)	95, 230, 499
BstDSI	CCRYGG	1 cut(s)	283
BstF5I	GGATG	1 cut(s)	572
BstFNI	CGCG	2 cut(s)	285, 531
BstHHI	GCGC	1 cut(s)	531
BstKTI	GATC	2 cut(s)	84, 408
BstMAI	GTCTC	2 cut(s)	334, 502
BstMBI	GATC	2 cut(s)	81, 405
BstMWI	GCNNNNNNNGC	2 cut(s)	30, 146
BstNI	CCWGG	2 cut(s)	21, 416
BstSCI	CCNGG	3 cut(s)	19, 195, 414
BstUI	CGCG	2 cut(s)	285, 531
BstV1I	GCAGC	1 cut(s)	574
BstV2I	GAAGAC	1 cut(s)	372
BsuI	GTATCC	1 cut(s)	290
BsuRI	GGCC	3 cut(s)	140, 235, 263
BtgI	CCRYGG	1 cut(s)	283
BtsCI	GGATG	1 cut(s)	572
BtsIMutI	CAGTG	1 cut(s)	519
BveI	ACCTGC	1 cut(s)	241
CfoI	GCGC	1 cut(s)	531
Cfr10I	RCCGGY	1 cut(s)	493
Cfr13I	GGNCC	1 cut(s)	262
Cfr42I	CCGCGG	1 cut(s)	286
CseI	GACGC	2 cut(s)	13, 138
CsiI	ACCWGGT	1 cut(s)	414
DdeI	CTNAG	3 cut(s)	95, 230, 499
DpnI	GATC	2 cut(s)	83, 407
DpnII	GATC	2 cut(s)	81, 405
EciI	GGCGGA	1 cut(s)	557
Ecl136II	GAGCTC	1 cut(s)	78
Eco130I	CCWWGG	1 cut(s)	236
Eco147I	AGGCCT	1 cut(s)	235
Eco24I	GRGCYC	2 cut(s)	80, 175
Eco31I	GGTCTC	1 cut(s)	502
Eco53kI	GAGCTC	1 cut(s)	78
Eco57I	CTGAAG	1 cut(s)	384
EcoICRI	GAGCTC	1 cut(s)	78
EcoRII	CCWGG	2 cut(s)	19, 414
EcoT14I	CCWWGG	1 cut(s)	236
EcoT38I	GRGCYC	2 cut(s)	80, 175
ErhI	CCWWGG	1 cut(s)	236
FaiI	YATR	3 cut(s)	167, 296, 375
FalI	AAGNNNNNCTT	2 cut(s)	470, 502
FbaI	TGATCA	1 cut(s)	405
Fnu4HI	GCNGC	2 cut(s)	261, 588
FokI	GGATG	1 cut(s)	559
FriOI	GRGCYC	2 cut(s)	80, 175
Fsp4HI	GCNGC	2 cut(s)	261, 588
GlaI	GCGC	1 cut(s)	530
GluI	GCNGC	2 cut(s)	261, 588
GsuI	CTGGAG	1 cut(s)	480
HaeIII	GGCC	3 cut(s)	140, 235, 263
HapII	CCGG	2 cut(s)	197, 494
HgaI	GACGC	2 cut(s)	13, 138
HhaI	GCGC	1 cut(s)	531
Hin1I	GRCGYC	1 cut(s)	24
Hin6I	GCGC	1 cut(s)	529
HinP1I	GCGC	1 cut(s)	529
HinfI	GANTC	3 cut(s)	71, 127, 200
HpaII	CCGG	2 cut(s)	197, 494
HphI	GGTGA	3 cut(s)	38, 107, 482
Hpy188I	TCNGA	5 cut(s)	98, 301, 355, 502, 568
Hpy188III	TCNNGA	1 cut(s)	487
HpyCH4IV	ACGT	1 cut(s)	504
HpyCH4V	TGCA	1 cut(s)	33
HpyF10VI	GCNNNNNNNGC	2 cut(s)	30, 146
HpyF3I	CTNAG	3 cut(s)	95, 230, 499
HpySE526I	ACGT	1 cut(s)	504
Hsp92I	GRCGYC	1 cut(s)	24
HspAI	GCGC	1 cut(s)	529
Ksp22I	TGATCA	1 cut(s)	405
KspI	CCGCGG	1 cut(s)	286
Kzo9I	GATC	2 cut(s)	81, 405
LmnI	GCTCC	1 cut(s)	526
Lsp1109I	GCAGC	1 cut(s)	574
LweI	GCATC	1 cut(s)	480
MabI	ACCWGGT	1 cut(s)	414
MaeII	ACGT	1 cut(s)	504
MaeIII	GTNAC	2 cut(s)	150, 289
MalI	GATC	2 cut(s)	83, 407
MboI	GATC	2 cut(s)	81, 405
MboII	GAAGA	2 cut(s)	377, 559
MhlI	GDGCHC	3 cut(s)	80, 175, 322
MluCI	AATT	8 cut(s)	40, 101, 225, 356, 370, 441, 465, 507
MlyI	GAGTC	1 cut(s)	194
MnlI	CCTC	8 cut(s)	47, 59, 72, 439, 442, 551, 586, 592
MroXI	GAANNNNTTC	1 cut(s)	225
MseI	TTAA	2 cut(s)	270, 387
MslI	CAYNNNNRTG	1 cut(s)	120
MspA1I	CMGCKG	1 cut(s)	285
MspI	CCGG	2 cut(s)	197, 494
MspR9I	CCNGG	3 cut(s)	21, 197, 416
MvaI	CCWGG	2 cut(s)	21, 416
MvnI	CGCG	2 cut(s)	285, 531
MwoI	GCNNNNNNNGC	2 cut(s)	30, 146
NciI	CCSGG	1 cut(s)	197
NdeII	GATC	2 cut(s)	81, 405
NmuCI	GTSAC	1 cut(s)	150
PceI	AGGCCT	1 cut(s)	235
PdmI	GAANNNNTTC	1 cut(s)	225
PfeI	GAWTC	2 cut(s)	71, 127
PfoI	TCCNGGA	1 cut(s)	195
PkrI	GCNGC	2 cut(s)	262, 589
PleI	GAGTC	1 cut(s)	194
PpsI	GAGTC	1 cut(s)	194
Psp124BI	GAGCTC	1 cut(s)	80
Psp6I	CCWGG	2 cut(s)	19, 414
PspGI	CCWGG	2 cut(s)	19, 414
PspPI	GGNCC	1 cut(s)	262
PsrI	GAACNNNNNNTAC	2 cut(s)	498, 530
RseI	CAYNNNNRTG	1 cut(s)	120
SacI	GAGCTC	1 cut(s)	80
SacII	CCGCGG	1 cut(s)	286
SaqAI	TTAA	2 cut(s)	270, 387
SatI	GCNGC	2 cut(s)	261, 588
Sau3AI	GATC	2 cut(s)	81, 405
Sau96I	GGNCC	1 cut(s)	262
SchI	GAGTC	1 cut(s)	194
ScrFI	CCNGG	3 cut(s)	21, 197, 416
SduI	GDGCHC	3 cut(s)	80, 175, 322
SetI	ASST	9 cut(s)	51, 60, 80, 96, 255, 328, 420, 507, 584
SexAI	ACCWGGT	1 cut(s)	414
SfaNI	GCATC	1 cut(s)	480
Sfr303I	CCGCGG	1 cut(s)	286
SgrBI	CCGCGG	1 cut(s)	286
SmiMI	CAYNNNNRTG	1 cut(s)	120
SmlI	CTYRAG	1 cut(s)	321
SmoI	CTYRAG	1 cut(s)	321
Sse9I	AATT	8 cut(s)	40, 101, 225, 356, 370, 441, 465, 507
SseBI	AGGCCT	1 cut(s)	235
SsiI	CCGC	7 cut(s)	118, 248, 260, 283, 285, 531, 542
SstI	GAGCTC	1 cut(s)	80
StuI	AGGCCT	1 cut(s)	235
StyD4I	CCNGG	3 cut(s)	19, 195, 414
StyI	CCWWGG	1 cut(s)	236
TaiI	ACGT	1 cut(s)	507
TaqI	TCGA	2 cut(s)	74, 80
TasI	AATT	8 cut(s)	40, 101, 225, 356, 370, 441, 465, 507
TauI	GCSGC	1 cut(s)	263
TfiI	GAWTC	2 cut(s)	71, 127
Tru1I	TTAA	2 cut(s)	270, 387
Tru9I	TTAA	2 cut(s)	270, 387
TscAI	CASTG	1 cut(s)	526
TseFI	GTSAC	1 cut(s)	150
TseI	GCWGC	1 cut(s)	587
Tsp45I	GTSAC	1 cut(s)	150
TspDTI	ATGAA	1 cut(s)	29
TspRI	CASTG	1 cut(s)	526
XapI	RAATTY	2 cut(s)	101, 356
XmnI	GAANNNNTTC	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.