Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0014324

Physical Location & Seq

Genomic Coordinates Reverse (-)

319803 .. 323564

Gene Structure 3762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G005300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGCTGCAATGGCGAAACCAAGCCTGCTTAACCCCCTCCGTTCCCACCTCAATGAGCTTCCTCTTATAGATTCGAGCTCGATCCGCACCAAGCTCAGAGAATTTCGGTTCTCTCACTTCAATGTCACTCTAAAGCACGCAAGAAATGCGTCCGTTCTTCCTGTGATAAGAGCCCAGAGTTCTCCTGATTATGTACCAGACTCCAAATTTTACAAAGTGGAAGCGATTCTGAGGCCATGGCGAGTTTCGCAGGTTTCTTCGGCTCTGTTGAAAATTGGTATTCGTGGGGTTACAGTATCTGATGTTCGAGGCTTTGGTGCTCAAGGTGGTTCAACAGAGAGGCATGGTGGCTCCGAATTTACTGAAGACAATTTTGTTGCTAAGGTTAAAATGGAGATTGTAGTGAGCAAAGACCAGGTTGAAGCAGTAGTAGACAAGATCATTGAGGCAGCCAAGACTGGAGAAATTGGTGATGGCAAGATTTTTGTGGTACCAGTCTCAGATGTAATAAGAATTCGCACCGGGGAGCGTGGAGAGAGGGCAGAGAAGATGACAGGTGGGTGGTCTGACCAGTCATCTGCTGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0000820 GO:0000821 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006521 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009628 GO:0009718 GO:0009743 GO:0009744 GO:0009812 GO:0009813 GO:0009889 GO:0010033 GO:0010307 GO:0010565 GO:0017076 GO:0019207 GO:0019216 GO:0019217 GO:0019220 GO:0019222 GO:0030234 GO:0030554 GO:0031323 GO:0031326 GO:0031976 GO:0031984 GO:0032553 GO:0032555 GO:0032559 GO:0033238 GO:0034285 GO:0035639 GO:0036094 GO:0042221 GO:0042304 GO:0042325 GO:0042440 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046283 GO:0046872 GO:0046890 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0062012 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0090368 GO:0097159 GO:0097367 GO:0098772 GO:1900079 GO:1901265 GO:1901363 GO:1901576 GO:1901700 GO:2000013 GO:2000282

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

P-II

Protein Analysis

197

Amino Acids

21.41

Weight (kDa)

9.55

Isoelectric Point (pI)

41.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01900
fragaria_vesca	FvH4_1g26590 FvH4_1g26590
malus_domestica	MD09G1287900.v1.1 MD17G1280100.v1.1
prunus_persica	Prupe.3G005300_v2.0.a1
pyrus_communis	pycom09g19530 pycom17g27810
rosa_chinensis	RchiOBHm_Chr3g0486731
rosa_laevigata	RLG00000023066
rosa_roxburghii	Rroxscaffold_6G00395650
rosa_rugosa	Rorug03G0226900
rosa_samantha	Rh3AG276600 Rh3BG311400 Rh3CG310700 Rh3DG307200
rosa_wichuraiana	Rw3G024600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	241
Acc65I	GGTACC	1 cut(s)	490
AccB1I	GGYRCC	1 cut(s)	490
AccI	GTMKAC	1 cut(s)	432
AciI	CCGC	1 cut(s)	85
AclWI	GGATC	1 cut(s)	76
AcsI	RAATTY	4 cut(s)	101, 206, 356, 513
AcuI	CTGAAG	1 cut(s)	384
AfaI	GTAC	2 cut(s)	195, 492
AgsI	TTSAA	4 cut(s)	121, 271, 333, 422
AjnI	CCWGG	1 cut(s)	414
AluBI	AGCT	3 cut(s)	58, 78, 94
AluI	AGCT	3 cut(s)	58, 78, 94
Alw21I	GWGCWC	2 cut(s)	80, 322
Alw26I	GTCTC	1 cut(s)	502
AlwI	GGATC	1 cut(s)	76
AlwNI	CAGNNNCTG	1 cut(s)	299
AoxI	GGCC	1 cut(s)	233
ApeKI	GCWGC	4 cut(s)	5, 449, 581, 584
ApoI	RAATTY	4 cut(s)	101, 206, 356, 513
Asp700I	GAANNNNTTC	1 cut(s)	225
Asp718I	GGTACC	1 cut(s)	490
AsuC2I	CCSGG	1 cut(s)	523
AsuHPI	GGTGA	1 cut(s)	482
BanI	GGYRCC	1 cut(s)	490
BanII	GRGCYC	2 cut(s)	80, 175
BbsI	GAAGAC	1 cut(s)	372
Bbv12I	GWGCWC	2 cut(s)	80, 322
BbvI	GCAGC	3 cut(s)	461, 568, 571
BccI	CCATC	1 cut(s)	467
BciT130I	CCWGG	1 cut(s)	416
BcnI	CCSGG	1 cut(s)	523
BcoDI	GTCTC	1 cut(s)	502
BfuAI	ACCTGC	1 cut(s)	241
BisI	GCNGC	4 cut(s)	6, 450, 582, 585
BlsI	GCNGC	4 cut(s)	7, 451, 583, 586
Bme1390I	CCNGG	2 cut(s)	416, 523
BmiI	GGNNCC	2 cut(s)	352, 492
BmrFI	CCNGG	2 cut(s)	416, 523
BpiI	GAAGAC	1 cut(s)	372
BpmI	CTGGAG	1 cut(s)	480
Bpu10I	CCTNAGC	1 cut(s)	381
BpuEI	CTTGAG	1 cut(s)	306
BpuMI	CCSGG	1 cut(s)	523
BsaJI	CCNNGG	2 cut(s)	236, 522
Bse1I	ACTGG	3 cut(s)	463, 494, 571
Bse3DI	GCAATG	1 cut(s)	15
BseBI	CCWGG	1 cut(s)	416
BseDI	CCNNGG	2 cut(s)	236, 522
BseMI	GCAATG	1 cut(s)	15
BseMII	CTCAG	3 cut(s)	109, 221, 513
BseNI	ACTGG	3 cut(s)	463, 494, 571
BseXI	GCAGC	3 cut(s)	461, 568, 571
BshFI	GGCC	1 cut(s)	235
BshNI	GGYRCC	1 cut(s)	490
BsiHKAI	GWGCWC	2 cut(s)	80, 322
BsiSI	CCGG	1 cut(s)	522
BsmAI	GTCTC	1 cut(s)	502
BsnI	GGCC	1 cut(s)	235
Bsp1286I	GDGCHC	3 cut(s)	80, 175, 322
Bsp143I	GATC	2 cut(s)	81, 438
Bsp19I	CCATGG	1 cut(s)	236
BspACI	CCGC	1 cut(s)	85
BspANI	GGCC	1 cut(s)	235
BspCNI	CTCAG	3 cut(s)	108, 222, 512
BspLI	GGNNCC	2 cut(s)	352, 492
BspMI	ACCTGC	1 cut(s)	241
BspPI	GGATC	1 cut(s)	76
BspT107I	GGYRCC	1 cut(s)	490
BsrDI	GCAATG	1 cut(s)	15
BsrI	ACTGG	3 cut(s)	463, 494, 571
BssECI	CCNNGG	2 cut(s)	236, 522
BssMI	GATC	2 cut(s)	81, 438
BssT1I	CCWWGG	1 cut(s)	236
Bst2UI	CCWGG	1 cut(s)	416
Bst4CI	ACNGT	1 cut(s)	295
BstAPI	GCANNNNNTGC	1 cut(s)	146
BstC8I	GCNNGC	2 cut(s)	26, 138
BstDEI	CTNAG	4 cut(s)	95, 230, 381, 499
BstDSI	CCRYGG	1 cut(s)	236
BstKTI	GATC	2 cut(s)	84, 441
BstMAI	GTCTC	1 cut(s)	502
BstMBI	GATC	2 cut(s)	81, 438
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 84, 146, 247
BstNI	CCWGG	1 cut(s)	416
BstSCI	CCNGG	2 cut(s)	414, 521
BstV1I	GCAGC	3 cut(s)	461, 568, 571
BstV2I	GAAGAC	1 cut(s)	372
BsuRI	GGCC	1 cut(s)	235
BtgI	CCRYGG	1 cut(s)	236
BveI	ACCTGC	1 cut(s)	241
Cac8I	GCNNGC	2 cut(s)	26, 138
CaiI	CAGNNNCTG	1 cut(s)	299
CseI	GACGC	1 cut(s)	138
CsiI	ACCWGGT	1 cut(s)	414
Csp6I	GTAC	2 cut(s)	194, 491
CviAII	CATG	2 cut(s)	237, 344
CviQI	GTAC	2 cut(s)	194, 491
DdeI	CTNAG	4 cut(s)	95, 230, 381, 499
DpnI	GATC	2 cut(s)	83, 440
DpnII	GATC	2 cut(s)	81, 438
Ecl136II	GAGCTC	1 cut(s)	78
Eco130I	CCWWGG	1 cut(s)	236
Eco24I	GRGCYC	2 cut(s)	80, 175
Eco53kI	GAGCTC	1 cut(s)	78
Eco57I	CTGAAG	1 cut(s)	384
EcoICRI	GAGCTC	1 cut(s)	78
EcoRI	GAATTC	1 cut(s)	513
EcoRII	CCWGG	1 cut(s)	414
EcoT14I	CCWWGG	1 cut(s)	236
EcoT38I	GRGCYC	2 cut(s)	80, 175
ErhI	CCWWGG	1 cut(s)	236
FaeI	CATG	2 cut(s)	240, 347
FaiI	YATR	4 cut(s)	68, 192, 238, 345
FatI	CATG	2 cut(s)	236, 343
FblI	GTMKAC	1 cut(s)	432
Fnu4HI	GCNGC	4 cut(s)	6, 450, 582, 585
FriOI	GRGCYC	2 cut(s)	80, 175
Fsp4HI	GCNGC	4 cut(s)	6, 450, 582, 585
GluI	GCNGC	4 cut(s)	6, 450, 582, 585
GsuI	CTGGAG	1 cut(s)	480
HaeIII	GGCC	1 cut(s)	235
HapII	CCGG	1 cut(s)	522
HgaI	GACGC	1 cut(s)	138
Hin1II	CATG	2 cut(s)	240, 347
HinfI	GANTC	3 cut(s)	71, 200, 226
HpaII	CCGG	1 cut(s)	522
HphI	GGTGA	1 cut(s)	482
Hpy166II	GTNNAC	1 cut(s)	433
Hpy188I	TCNGA	6 cut(s)	98, 231, 301, 355, 502, 568
Hpy188III	TCNNGA	1 cut(s)	185
Hpy8I	GTNNAC	1 cut(s)	433
HpyCH4III	ACNGT	1 cut(s)	295
HpyCH4V	TGCA	1 cut(s)	8
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 84, 146, 247
HpyF3I	CTNAG	4 cut(s)	95, 230, 381, 499
Hsp92II	CATG	2 cut(s)	240, 347
KpnI	GGTACC	1 cut(s)	494
Kzo9I	GATC	2 cut(s)	81, 438
LmnI	GCTCC	2 cut(s)	356, 526
Lsp1109I	GCAGC	3 cut(s)	461, 568, 571
MabI	ACCWGGT	1 cut(s)	414
MaeIII	GTNAC	2 cut(s)	124, 289
MalI	GATC	2 cut(s)	83, 440
MboI	GATC	2 cut(s)	81, 438
MboII	GAAGA	4 cut(s)	149, 249, 377, 559
MhlI	GDGCHC	3 cut(s)	80, 175, 322
MluCI	AATT	7 cut(s)	101, 206, 273, 356, 370, 465, 513
MlyI	GAGTC	1 cut(s)	194
MnlI	CCTC	8 cut(s)	47, 59, 72, 225, 302, 333, 439, 531
MroXI	GAANNNNTTC	1 cut(s)	225
MseI	TTAA	2 cut(s)	30, 387
MslI	CAYNNNNRTG	2 cut(s)	51, 120
MspI	CCGG	1 cut(s)	522
MspR9I	CCNGG	2 cut(s)	416, 523
MvaI	CCWGG	1 cut(s)	416
MwoI	GCNNNNNNNGC	4 cut(s)	11, 84, 146, 247
NciI	CCSGG	1 cut(s)	523
NcoI	CCATGG	1 cut(s)	236
NdeII	GATC	2 cut(s)	81, 438
NlaIII	CATG	2 cut(s)	240, 347
NlaIV	GGNNCC	2 cut(s)	352, 492
NmuCI	GTSAC	1 cut(s)	124
PdmI	GAANNNNTTC	1 cut(s)	225
PfeI	GAWTC	2 cut(s)	71, 226
PkrI	GCNGC	4 cut(s)	7, 451, 583, 586
PleI	GAGTC	1 cut(s)	194
PpsI	GAGTC	1 cut(s)	194
Psp124BI	GAGCTC	1 cut(s)	80
Psp6I	CCWGG	1 cut(s)	414
PspGI	CCWGG	1 cut(s)	414
PspN4I	GGNNCC	2 cut(s)	352, 492
PsrI	GAACNNNNNNTAC	2 cut(s)	288, 320
PstNI	CAGNNNCTG	1 cut(s)	299
RsaI	GTAC	2 cut(s)	195, 492
RsaNI	GTAC	2 cut(s)	194, 491
RseI	CAYNNNNRTG	2 cut(s)	51, 120
SacI	GAGCTC	1 cut(s)	80
SaqAI	TTAA	2 cut(s)	30, 387
SatI	GCNGC	4 cut(s)	6, 450, 582, 585
Sau3AI	GATC	2 cut(s)	81, 438
SchI	GAGTC	1 cut(s)	194
ScrFI	CCNGG	2 cut(s)	416, 523
SduI	GDGCHC	3 cut(s)	80, 175, 322
SetI	ASST	9 cut(s)	51, 60, 80, 96, 255, 328, 387, 420, 559
SexAI	ACCWGGT	1 cut(s)	414
SmiMI	CAYNNNNRTG	2 cut(s)	51, 120
SmlI	CTYRAG	1 cut(s)	321
SmoI	CTYRAG	1 cut(s)	321
Sse9I	AATT	7 cut(s)	101, 206, 273, 356, 370, 465, 513
SsiI	CCGC	1 cut(s)	85
SstI	GAGCTC	1 cut(s)	80
StyD4I	CCNGG	2 cut(s)	414, 521
StyI	CCWWGG	1 cut(s)	236
TaaI	ACNGT	1 cut(s)	295
TaqI	TCGA	3 cut(s)	74, 80, 307
TasI	AATT	7 cut(s)	101, 206, 273, 356, 370, 465, 513
TfiI	GAWTC	2 cut(s)	71, 226
Tru1I	TTAA	2 cut(s)	30, 387
Tru9I	TTAA	2 cut(s)	30, 387
TseFI	GTSAC	1 cut(s)	124
TseI	GCWGC	4 cut(s)	5, 449, 581, 584
Tsp45I	GTSAC	1 cut(s)	124
TspGWI	ACGGA	2 cut(s)	29, 142
XapI	RAATTY	4 cut(s)	101, 206, 356, 513
XmiI	GTMKAC	1 cut(s)	432
XmnI	GAANNNNTTC	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.