Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0014324

Physical Location & Seq

Genomic Coordinates Reverse (-)

18418015 .. 18421570

Gene Structure 3556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g26590.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGCCACAATGATGAAACCAGGCGCGATTTGCACCTTTAATTCTCACCTGAAGGAGCTTCCTATTTTCGATTCGAGCTCGCTCCGTCCGAGCCTCAGAAATTCTGGGTTCAATCCCCGTAATGTGAATCTAAAACAGGCCAGAAATGCGTCACTTGTTCCCGTCATAAGAGCCCAGGCTTACCCTGATTATTTCCCGGACTCCAAGTTTTACAAGGTGGAAGCAATTCTAAGGCCTTGGAGAGTTCCGCAGGTTTCTACGGCCCTGCTTAAAATCGGTATCCGCGGTGTTACCATATCTGATGTTCGGGGCTTTGGTGCTCAAGGCGGTTCGAAAGAGAGACAGGGCGGTTCTGAATTTGCTGAAGACAATTATGTCGCTAAAGTTAAAATGGAGATTGTAGTGAGCAAAGACCAGGTTGAAGCAGTAGTTAGCAAGATTATTGAGGAGGCAAGGACTGGAGAAATTGGTGATGGCAAGATCTTCTTGGTGCCAGTTGCAGATGTAATTAGAGTTCGCACTGGGGAGCGCGGAGAGAAGGCGGAGAAAATGACAGGAGGGCGATCTGACACAGTCCATGCCTCTGCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0000820 GO:0000821 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006521 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009628 GO:0009718 GO:0009743 GO:0009744 GO:0009812 GO:0009813 GO:0009889 GO:0010033 GO:0010307 GO:0010565 GO:0017076 GO:0019207 GO:0019216 GO:0019217 GO:0019220 GO:0019222 GO:0030234 GO:0030554 GO:0031323 GO:0031326 GO:0031976 GO:0031984 GO:0032553 GO:0032555 GO:0032559 GO:0033238 GO:0034285 GO:0035639 GO:0036094 GO:0042221 GO:0042304 GO:0042325 GO:0042440 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046283 GO:0046872 GO:0046890 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0062012 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0090368 GO:0097159 GO:0097367 GO:0098772 GO:1900079 GO:1901265 GO:1901363 GO:1901576 GO:1901700 GO:2000013 GO:2000282

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

P-II

Protein Analysis

198

Amino Acids

21.49

Weight (kDa)

9.6

Isoelectric Point (pI)

39.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
P-II	PF00543	72 - 182	6.6e-25	Nitrogen regulatory protein P-II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0014324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01900
fragaria_vesca	FvH4_1g26590 FvH4_1g26590
malus_domestica	MD09G1287900.v1.1 MD17G1280100.v1.1
prunus_persica	Prupe.3G005300_v2.0.a1
pyrus_communis	pycom09g19530 pycom17g27810
rosa_chinensis	RchiOBHm_Chr3g0486731
rosa_laevigata	RLG00000023066
rosa_roxburghii	Rroxscaffold_6G00395650
rosa_rugosa	Rorug03G0226900
rosa_samantha	Rh3AG276600 Rh3BG311400 Rh3CG310700 Rh3DG307200
rosa_wichuraiana	Rw3G024600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	374
Acc36I	ACCTGC	1 cut(s)	241
AccB1I	GGYRCC	1 cut(s)	490
AccII	CGCG	3 cut(s)	26, 285, 531
AciI	CCGC	7 cut(s)	248, 283, 285, 327, 348, 531, 542
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	100, 356
AcuI	CTGAAG	2 cut(s)	71, 384
AgsI	TTSAA	2 cut(s)	112, 422
AjnI	CCWGG	3 cut(s)	19, 174, 414
AluBI	AGCT	2 cut(s)	58, 78
AluI	AGCT	2 cut(s)	58, 78
Alw21I	GWGCWC	2 cut(s)	80, 322
Alw26I	GTCTC	1 cut(s)	334
AoxI	GGCC	4 cut(s)	3, 138, 233, 261
ApeKI	GCWGC	1 cut(s)	587
ApoI	RAATTY	2 cut(s)	100, 356
Asp700I	GAANNNNTTC	1 cut(s)	225
AspLEI	GCGC	2 cut(s)	26, 531
AspS9I	GGNCC	1 cut(s)	262
AsuC2I	CCSGG	1 cut(s)	197
AsuHPI	GGTGA	2 cut(s)	38, 482
AsuII	TTCGAA	1 cut(s)	332
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	490
BanII	GRGCYC	2 cut(s)	80, 175
BbsI	GAAGAC	1 cut(s)	372
Bbv12I	GWGCWC	2 cut(s)	80, 322
BbvI	GCAGC	1 cut(s)	574
BccI	CCATC	1 cut(s)	467
BceAI	ACGGC	1 cut(s)	276
BciT130I	CCWGG	3 cut(s)	21, 176, 416
BciVI	GTATCC	1 cut(s)	290
BcnI	CCSGG	1 cut(s)	197
BcoDI	GTCTC	1 cut(s)	334
BfuAI	ACCTGC	1 cut(s)	241
BfuI	GTATCC	1 cut(s)	290
BglII	AGATCT	1 cut(s)	480
BisI	GCNGC	1 cut(s)	588
BlsI	GCNGC	1 cut(s)	589
Bme1390I	CCNGG	4 cut(s)	21, 176, 197, 416
BmgT120I	GGNCC	1 cut(s)	262
BmiI	GGNNCC	1 cut(s)	492
BmrFI	CCNGG	4 cut(s)	21, 176, 197, 416
BmrI	ACTGGG	1 cut(s)	531
BmuI	ACTGGG	1 cut(s)	531
BpiI	GAAGAC	1 cut(s)	372
BpmI	CTGGAG	1 cut(s)	480
Bpu14I	TTCGAA	1 cut(s)	332
BpuEI	CTTGAG	1 cut(s)	306
BpuMI	CCSGG	1 cut(s)	197
BsaJI	CCNNGG	3 cut(s)	174, 236, 283
Bse1I	ACTGG	3 cut(s)	463, 494, 526
BseBI	CCWGG	3 cut(s)	21, 176, 416
BseDI	CCNNGG	3 cut(s)	174, 236, 283
BseMII	CTCAG	1 cut(s)	109
BseNI	ACTGG	3 cut(s)	463, 494, 526
BseRI	GAGGAG	1 cut(s)	461
BseXI	GCAGC	1 cut(s)	574
Bsh1236I	CGCG	3 cut(s)	26, 285, 531
BshFI	GGCC	4 cut(s)	5, 140, 235, 263
BshNI	GGYRCC	1 cut(s)	490
BsiHKAI	GWGCWC	2 cut(s)	80, 322
BsiSI	CCGG	1 cut(s)	197
BsmAI	GTCTC	1 cut(s)	334
BsnI	GGCC	4 cut(s)	5, 140, 235, 263
Bsp119I	TTCGAA	1 cut(s)	332
Bsp1286I	GDGCHC	3 cut(s)	80, 175, 322
Bsp143I	GATC	2 cut(s)	480, 563
BspACI	CCGC	7 cut(s)	248, 283, 285, 327, 348, 531, 542
BspANI	GGCC	4 cut(s)	5, 140, 235, 263
BspCNI	CTCAG	1 cut(s)	108
BspFNI	CGCG	3 cut(s)	26, 285, 531
BspLI	GGNNCC	1 cut(s)	492
BspMI	ACCTGC	1 cut(s)	241
BspT104I	TTCGAA	1 cut(s)	332
BspT107I	GGYRCC	1 cut(s)	490
BsrI	ACTGG	3 cut(s)	463, 494, 526
BssECI	CCNNGG	3 cut(s)	174, 236, 283
BssMI	GATC	2 cut(s)	480, 563
BssT1I	CCWWGG	1 cut(s)	236
Bst2UI	CCWGG	3 cut(s)	21, 176, 416
Bst4CI	ACNGT	1 cut(s)	574
BstBI	TTCGAA	1 cut(s)	332
BstC8I	GCNNGC	1 cut(s)	80
BstDEI	CTNAG	2 cut(s)	95, 230
BstDSI	CCRYGG	1 cut(s)	283
BstFNI	CGCG	3 cut(s)	26, 285, 531
BstHHI	GCGC	2 cut(s)	26, 531
BstKTI	GATC	2 cut(s)	483, 566
BstMAI	GTCTC	1 cut(s)	334
BstMBI	GATC	2 cut(s)	480, 563
BstMWI	GCNNNNNNNGC	3 cut(s)	30, 146, 587
BstNI	CCWGG	3 cut(s)	21, 176, 416
BstSCI	CCNGG	4 cut(s)	19, 174, 195, 414
BstUI	CGCG	3 cut(s)	26, 285, 531
BstV1I	GCAGC	1 cut(s)	574
BstV2I	GAAGAC	1 cut(s)	372
BstX2I	RGATCY	1 cut(s)	480
BstYI	RGATCY	1 cut(s)	480
BsuI	GTATCC	1 cut(s)	290
BsuRI	GGCC	4 cut(s)	5, 140, 235, 263
BtgI	CCRYGG	1 cut(s)	283
BtsIMutI	CAGTG	1 cut(s)	519
BveI	ACCTGC	1 cut(s)	241
Cac8I	GCNNGC	1 cut(s)	80
CfoI	GCGC	2 cut(s)	26, 531
Cfr13I	GGNCC	1 cut(s)	262
Cfr42I	CCGCGG	1 cut(s)	286
CseI	GACGC	1 cut(s)	138
CsiI	ACCWGGT	1 cut(s)	414
CviAII	CATG	2 cut(s)	578, 591
DdeI	CTNAG	2 cut(s)	95, 230
DpnI	GATC	2 cut(s)	482, 565
DpnII	GATC	2 cut(s)	480, 563
DrdI	GACNNNNNNGTC	1 cut(s)	374
DseDI	GACNNNNNNGTC	1 cut(s)	374
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	557
Ecl136II	GAGCTC	1 cut(s)	78
Eco130I	CCWWGG	1 cut(s)	236
Eco147I	AGGCCT	1 cut(s)	235
Eco24I	GRGCYC	2 cut(s)	80, 175
Eco53kI	GAGCTC	1 cut(s)	78
Eco57I	CTGAAG	2 cut(s)	71, 384
EcoICRI	GAGCTC	1 cut(s)	78
EcoRII	CCWGG	3 cut(s)	19, 174, 414
EcoT14I	CCWWGG	1 cut(s)	236
EcoT38I	GRGCYC	2 cut(s)	80, 175
ErhI	CCWWGG	1 cut(s)	236
FaeI	CATG	2 cut(s)	581, 594
FaiI	YATR	5 cut(s)	167, 296, 375, 579, 592
FalI	AAGNNNNNCTT	2 cut(s)	470, 502
FatI	CATG	2 cut(s)	577, 590
Fnu4HI	GCNGC	1 cut(s)	588
FriOI	GRGCYC	2 cut(s)	80, 175
Fsp4HI	GCNGC	1 cut(s)	588
GlaI	GCGC	2 cut(s)	25, 530
GluI	GCNGC	1 cut(s)	588
GsuI	CTGGAG	1 cut(s)	480
HaeIII	GGCC	4 cut(s)	5, 140, 235, 263
HapII	CCGG	1 cut(s)	197
HgaI	GACGC	1 cut(s)	138
HhaI	GCGC	2 cut(s)	26, 531
Hin1II	CATG	2 cut(s)	581, 594
Hin6I	GCGC	2 cut(s)	24, 529
HinP1I	GCGC	2 cut(s)	24, 529
HinfI	GANTC	3 cut(s)	71, 127, 200
HpaII	CCGG	1 cut(s)	197
HphI	GGTGA	2 cut(s)	38, 482
Hpy188I	TCNGA	5 cut(s)	90, 98, 301, 355, 568
HpyAV	CCTTC	2 cut(s)	46, 532
HpyCH4III	ACNGT	1 cut(s)	574
HpyCH4V	TGCA	3 cut(s)	33, 500, 590
HpyF10VI	GCNNNNNNNGC	3 cut(s)	30, 146, 587
HpyF3I	CTNAG	2 cut(s)	95, 230
Hsp92II	CATG	2 cut(s)	581, 594
HspAI	GCGC	2 cut(s)	24, 529
KspI	CCGCGG	1 cut(s)	286
Kzo9I	GATC	2 cut(s)	480, 563
LmnI	GCTCC	3 cut(s)	55, 87, 526
Lsp1109I	GCAGC	1 cut(s)	574
MabI	ACCWGGT	1 cut(s)	414
MaeIII	GTNAC	2 cut(s)	150, 289
MalI	GATC	2 cut(s)	482, 565
MboI	GATC	2 cut(s)	480, 563
MboII	GAAGA	2 cut(s)	377, 475
MflI	RGATCY	1 cut(s)	480
MhlI	GDGCHC	3 cut(s)	80, 175, 322
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	7 cut(s)	40, 100, 225, 356, 370, 465, 507
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	194
MnlI	CCTC	5 cut(s)	104, 439, 442, 551, 592
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	225
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	39, 270, 387
MslI	CAYNNNNRTG	1 cut(s)	11
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	285
MspI	CCGG	1 cut(s)	197
MspR9I	CCNGG	4 cut(s)	21, 176, 197, 416
MvaI	CCWGG	3 cut(s)	21, 176, 416
MvnI	CGCG	3 cut(s)	26, 285, 531
MwoI	GCNNNNNNNGC	3 cut(s)	30, 146, 587
NciI	CCSGG	1 cut(s)	197
NdeII	GATC	2 cut(s)	480, 563
NlaIII	CATG	2 cut(s)	581, 594
NlaIV	GGNNCC	1 cut(s)	492
NmuCI	GTSAC	1 cut(s)	150
NspV	TTCGAA	1 cut(s)	332
PceI	AGGCCT	1 cut(s)	235
PcsI	WCGNNNNNNNCGW	1 cut(s)	86
PdmI	GAANNNNTTC	1 cut(s)	225
PfeI	GAWTC	2 cut(s)	71, 127
PflFI	GACNNNGTC	1 cut(s)	572
PfoI	TCCNGGA	1 cut(s)	195
PkrI	GCNGC	1 cut(s)	589
PleI	GAGTC	1 cut(s)	194
PpsI	GAGTC	1 cut(s)	194
Psp124BI	GAGCTC	1 cut(s)	80
Psp6I	CCWGG	3 cut(s)	19, 174, 414
PspGI	CCWGG	3 cut(s)	19, 174, 414
PspN4I	GGNNCC	1 cut(s)	492
PspPI	GGNCC	1 cut(s)	262
PsrI	GAACNNNNNNTAC	2 cut(s)	498, 530
PsuI	RGATCY	1 cut(s)	480
PsyI	GACNNNGTC	1 cut(s)	572
RseI	CAYNNNNRTG	1 cut(s)	11
SacI	GAGCTC	1 cut(s)	80
SacII	CCGCGG	1 cut(s)	286
SaqAI	TTAA	3 cut(s)	39, 270, 387
SatI	GCNGC	1 cut(s)	588
Sau3AI	GATC	2 cut(s)	480, 563
Sau96I	GGNCC	1 cut(s)	262
SchI	GAGTC	1 cut(s)	194
ScrFI	CCNGG	4 cut(s)	21, 176, 197, 416
SduI	GDGCHC	3 cut(s)	80, 175, 322
SetI	ASST	7 cut(s)	38, 51, 60, 80, 219, 255, 420
SexAI	ACCWGGT	1 cut(s)	414
Sfr303I	CCGCGG	1 cut(s)	286
SfuI	TTCGAA	1 cut(s)	332
SgrBI	CCGCGG	1 cut(s)	286
SmiMI	CAYNNNNRTG	1 cut(s)	11
SmlI	CTYRAG	1 cut(s)	321
SmoI	CTYRAG	1 cut(s)	321
Sse9I	AATT	7 cut(s)	40, 100, 225, 356, 370, 465, 507
SseBI	AGGCCT	1 cut(s)	235
SsiI	CCGC	7 cut(s)	248, 283, 285, 327, 348, 531, 542
SstI	GAGCTC	1 cut(s)	80
StuI	AGGCCT	1 cut(s)	235
StyD4I	CCNGG	4 cut(s)	19, 174, 195, 414
StyI	CCWWGG	1 cut(s)	236
TaaI	ACNGT	1 cut(s)	574
TaqI	TCGA	3 cut(s)	69, 74, 332
TasI	AATT	7 cut(s)	40, 100, 225, 356, 370, 465, 507
TfiI	GAWTC	2 cut(s)	71, 127
Tru1I	TTAA	3 cut(s)	39, 270, 387
Tru9I	TTAA	3 cut(s)	39, 270, 387
TscAI	CASTG	1 cut(s)	526
TseFI	GTSAC	1 cut(s)	150
TseI	GCWGC	1 cut(s)	587
Tsp45I	GTSAC	1 cut(s)	150
TspDTI	ATGAA	1 cut(s)	29
TspGWI	ACGGA	1 cut(s)	74
TspRI	CASTG	1 cut(s)	526
Tth111I	GACNNNGTC	1 cut(s)	572
XapI	RAATTY	2 cut(s)	100, 356
XmnI	GAANNNNTTC	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.