Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0014324

Physical Location & Seq

Genomic Coordinates Forward (+)

34036460 .. 34039947

Gene Structure 3488 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1280100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGCTACAATTGGGAATGCAGGCCTGCTTAGCCCCCTCCAATGCCACCTCAACGAGCTTCCGCTTCTGGGTTCGTGCTCGATCCGCACCAAGCTCGCAGAATTTCGGTTCTGTCAGCCCAATGTCGCTCTAAAGCACGCAAGAAATGCGTCCATTGTTCCCGTTGTGCGAGCACAGAGTTCTTCTGGCTATGTCCCAGACTCCAAATATTACAAAGTCGAAGCGATTCTGAGGCCCTGGCGAGTTTCGCAGGTTTCTTCGGCTCTGCTGAAAATTGGAATTCGTGGCGTTACTGTATCTGATGTTCGAGGCTTTGGTGCTCAAGGTGGTTCAACAGAGAGACAGGGTGGCTCTGAATTTTCTGAAGACAATTTTGTCGCTAAGATTAAAATGGAGATTGTAGTGAGCAAAGACCAGGTTGAAGCGGTGGTTGACACAATAATTGAGGCAGCCAGGACTGGAGAAATCGGTGATGGCAAGATTTTTGTGGTGCCAGTCTCAGATGTCATAAGAGTTCGCACTGGGGAGCGTGGAGAGAAGGCGGAGAAGATGACAGGAGGGCGGTCTGACGTGTCCTCTTCCTCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0000820 GO:0000821 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006521 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009628 GO:0009718 GO:0009743 GO:0009744 GO:0009812 GO:0009813 GO:0009889 GO:0010033 GO:0010307 GO:0010565 GO:0017076 GO:0019207 GO:0019216 GO:0019217 GO:0019220 GO:0019222 GO:0030234 GO:0030554 GO:0031323 GO:0031326 GO:0031976 GO:0031984 GO:0032553 GO:0032555 GO:0032559 GO:0033238 GO:0034285 GO:0035639 GO:0036094 GO:0042221 GO:0042304 GO:0042325 GO:0042440 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046283 GO:0046872 GO:0046890 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0062012 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0090368 GO:0097159 GO:0097367 GO:0098772 GO:1900079 GO:1901265 GO:1901363 GO:1901576 GO:1901700 GO:2000013 GO:2000282

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

P-II

Protein Analysis

197

Amino Acids

20.95

Weight (kDa)

9.05

Isoelectric Point (pI)

40.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
P-II	PF00543	72 - 176	2.9e-30	Nitrogen regulatory protein P-II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0014324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01900
fragaria_vesca	FvH4_1g26590 FvH4_1g26590
malus_domestica	MD09G1287900.v1.1 MD17G1280100.v1.1
prunus_persica	Prupe.3G005300_v2.0.a1
pyrus_communis	pycom09g19530 pycom17g27810
rosa_chinensis	RchiOBHm_Chr3g0486731
rosa_laevigata	RLG00000023066
rosa_roxburghii	Rroxscaffold_6G00395650
rosa_rugosa	Rorug03G0226900
rosa_samantha	Rh3AG276600 Rh3BG311400 Rh3CG310700 Rh3DG307200
rosa_wichuraiana	Rw3G024600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	374
Acc36I	ACCTGC	1 cut(s)	241
AccB1I	GGYRCC	1 cut(s)	490
AciI	CCGC	5 cut(s)	62, 85, 425, 542, 562
AclWI	GGATC	1 cut(s)	76
AcsI	RAATTY	3 cut(s)	101, 279, 356
AcuI	CTGAAG	1 cut(s)	384
AfiI	CCNNNNNNNGG	1 cut(s)	68
AflIII	ACRYGT	1 cut(s)	570
AgsI	TTSAA	2 cut(s)	333, 422
AjiI	CACGTC	1 cut(s)	571
AjnI	CCWGG	3 cut(s)	236, 414, 452
AluBI	AGCT	2 cut(s)	58, 94
AluI	AGCT	2 cut(s)	58, 94
Alw21I	GWGCWC	3 cut(s)	80, 175, 322
Alw26I	GTCTC	2 cut(s)	334, 502
AlwI	GGATC	1 cut(s)	76
AoxI	GGCC	2 cut(s)	22, 233
ApeKI	GCWGC	1 cut(s)	449
ApoI	RAATTY	3 cut(s)	101, 279, 356
Asp700I	GAANNNNTTC	1 cut(s)	225
AspS9I	GGNCC	1 cut(s)	234
AsuHPI	GGTGA	1 cut(s)	482
BanI	GGYRCC	1 cut(s)	490
BbsI	GAAGAC	1 cut(s)	372
Bbv12I	GWGCWC	3 cut(s)	80, 175, 322
BbvI	GCAGC	1 cut(s)	461
BccI	CCATC	1 cut(s)	467
BcgI	CGANNNNNNTGC	2 cut(s)	76, 110
BciT130I	CCWGG	3 cut(s)	238, 416, 454
BcoDI	GTCTC	2 cut(s)	334, 502
BfuAI	ACCTGC	1 cut(s)	241
BisI	GCNGC	1 cut(s)	450
BlpI	GCTNAGC	1 cut(s)	29
BlsI	GCNGC	1 cut(s)	451
Bme1390I	CCNGG	3 cut(s)	238, 416, 454
BmgBI	CACGTC	1 cut(s)	571
BmgT120I	GGNCC	1 cut(s)	234
BmiI	GGNNCC	1 cut(s)	492
BmrFI	CCNGG	3 cut(s)	238, 416, 454
BmrI	ACTGGG	1 cut(s)	531
BmuI	ACTGGG	1 cut(s)	531
BpiI	GAAGAC	1 cut(s)	372
BpmI	CTGGAG	1 cut(s)	480
Bpu1102I	GCTNAGC	1 cut(s)	29
BpuEI	CTTGAG	1 cut(s)	306
BsaJI	CCNNGG	1 cut(s)	236
Bsc4I	CCNNNNNNNGG	1 cut(s)	68
Bse1I	ACTGG	3 cut(s)	463, 494, 526
BseBI	CCWGG	3 cut(s)	238, 416, 454
BseDI	CCNNGG	1 cut(s)	236
BseLI	CCNNNNNNNGG	1 cut(s)	68
BseMII	CTCAG	2 cut(s)	221, 513
BseNI	ACTGG	3 cut(s)	463, 494, 526
BseXI	GCAGC	1 cut(s)	461
BshFI	GGCC	2 cut(s)	24, 235
BshNI	GGYRCC	1 cut(s)	490
BsiHKAI	GWGCWC	3 cut(s)	80, 175, 322
BslFI	GGGAC	1 cut(s)	179
BslI	CCNNNNNNNGG	1 cut(s)	68
BsmAI	GTCTC	2 cut(s)	334, 502
BsmFI	GGGAC	1 cut(s)	179
BsmI	GAATGC	1 cut(s)	22
BsnI	GGCC	2 cut(s)	24, 235
Bsp1286I	GDGCHC	3 cut(s)	80, 175, 322
Bsp143I	GATC	1 cut(s)	81
Bsp1720I	GCTNAGC	1 cut(s)	29
BspACI	CCGC	5 cut(s)	62, 85, 425, 542, 562
BspANI	GGCC	2 cut(s)	24, 235
BspCNI	CTCAG	2 cut(s)	222, 512
BspLI	GGNNCC	1 cut(s)	492
BspMI	ACCTGC	1 cut(s)	241
BspPI	GGATC	1 cut(s)	76
BspT107I	GGYRCC	1 cut(s)	490
BsrI	ACTGG	3 cut(s)	463, 494, 526
BssECI	CCNNGG	1 cut(s)	236
BssMI	GATC	1 cut(s)	81
Bst2UI	CCWGG	3 cut(s)	238, 416, 454
Bst4CI	ACNGT	1 cut(s)	295
Bst6I	CTCTTC	1 cut(s)	583
BstAPI	GCANNNNNTGC	1 cut(s)	146
BstC8I	GCNNGC	5 cut(s)	22, 26, 96, 138, 171
BstDEI	CTNAG	4 cut(s)	29, 230, 381, 499
BstKTI	GATC	1 cut(s)	84
BstMAI	GTCTC	2 cut(s)	334, 502
BstMBI	GATC	1 cut(s)	81
BstMWI	GCNNNNNNNGC	4 cut(s)	30, 84, 146, 247
BstNI	CCWGG	3 cut(s)	238, 416, 454
BstSCI	CCNGG	3 cut(s)	236, 414, 452
BstV1I	GCAGC	1 cut(s)	461
BstV2I	GAAGAC	1 cut(s)	372
BsuRI	GGCC	2 cut(s)	24, 235
BtrI	CACGTC	1 cut(s)	571
BtsIMutI	CAGTG	1 cut(s)	519
BveI	ACCTGC	1 cut(s)	241
Cac8I	GCNNGC	5 cut(s)	22, 26, 96, 138, 171
Cfr13I	GGNCC	1 cut(s)	234
CseI	GACGC	1 cut(s)	138
CsiI	ACCWGGT	1 cut(s)	414
DdeI	CTNAG	4 cut(s)	29, 230, 381, 499
DpnI	GATC	1 cut(s)	83
DpnII	GATC	1 cut(s)	81
DrdI	GACNNNNNNGTC	1 cut(s)	374
DseDI	GACNNNNNNGTC	1 cut(s)	374
Eam1104I	CTCTTC	1 cut(s)	583
EarI	CTCTTC	1 cut(s)	583
EciI	GGCGGA	1 cut(s)	557
Eco147I	AGGCCT	1 cut(s)	24
Eco57I	CTGAAG	1 cut(s)	384
EcoO109I	RGGNCCY	1 cut(s)	234
EcoRI	GAATTC	1 cut(s)	279
EcoRII	CCWGG	3 cut(s)	236, 414, 452
FaiI	YATR	2 cut(s)	192, 509
FaqI	GGGAC	1 cut(s)	179
Fnu4HI	GCNGC	1 cut(s)	450
Fsp4HI	GCNGC	1 cut(s)	450
GluI	GCNGC	1 cut(s)	450
GsuI	CTGGAG	1 cut(s)	480
HaeIII	GGCC	2 cut(s)	24, 235
HgaI	GACGC	1 cut(s)	138
HincII	GTYRAC	1 cut(s)	433
HindII	GTYRAC	1 cut(s)	433
HinfI	GANTC	2 cut(s)	200, 226
HphI	GGTGA	1 cut(s)	482
Hpy166II	GTNNAC	1 cut(s)	433
Hpy188I	TCNGA	6 cut(s)	231, 301, 355, 364, 502, 568
Hpy8I	GTNNAC	1 cut(s)	433
HpyAV	CCTTC	1 cut(s)	532
HpyCH4III	ACNGT	1 cut(s)	295
HpyCH4IV	ACGT	1 cut(s)	570
HpyCH4V	TGCA	1 cut(s)	20
HpyF10VI	GCNNNNNNNGC	4 cut(s)	30, 84, 146, 247
HpyF3I	CTNAG	4 cut(s)	29, 230, 381, 499
HpySE526I	ACGT	1 cut(s)	570
Kzo9I	GATC	1 cut(s)	81
LmnI	GCTCC	1 cut(s)	526
Lsp1109I	GCAGC	1 cut(s)	461
MabI	ACCWGGT	1 cut(s)	414
MaeII	ACGT	1 cut(s)	570
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	1 cut(s)	83
MboI	GATC	1 cut(s)	81
MboII	GAAGA	5 cut(s)	174, 249, 377, 559, 570
MfeI	CAATTG	1 cut(s)	9
MhlI	GDGCHC	3 cut(s)	80, 175, 322
MluCI	AATT	7 cut(s)	9, 101, 273, 279, 356, 370, 441
MlyI	GAGTC	1 cut(s)	194
MnlI	CCTC	7 cut(s)	47, 59, 225, 302, 439, 551, 586
MroXI	GAANNNNTTC	1 cut(s)	225
MseI	TTAA	1 cut(s)	387
MspR9I	CCNGG	3 cut(s)	238, 416, 454
MunI	CAATTG	1 cut(s)	9
Mva1269I	GAATGC	1 cut(s)	22
MvaI	CCWGG	3 cut(s)	238, 416, 454
MwoI	GCNNNNNNNGC	4 cut(s)	30, 84, 146, 247
NdeII	GATC	1 cut(s)	81
NlaIV	GGNNCC	1 cut(s)	492
PceI	AGGCCT	1 cut(s)	24
PctI	GAATGC	1 cut(s)	22
PdmI	GAANNNNTTC	1 cut(s)	225
PfeI	GAWTC	1 cut(s)	226
PkrI	GCNGC	1 cut(s)	451
PleI	GAGTC	1 cut(s)	194
PpsI	GAGTC	1 cut(s)	194
Psp6I	CCWGG	3 cut(s)	236, 414, 452
PspGI	CCWGG	3 cut(s)	236, 414, 452
PspN4I	GGNNCC	1 cut(s)	492
PspPI	GGNCC	1 cut(s)	234
PsrI	GAACNNNNNNTAC	2 cut(s)	288, 320
SaqAI	TTAA	1 cut(s)	387
SatI	GCNGC	1 cut(s)	450
Sau3AI	GATC	1 cut(s)	81
Sau96I	GGNCC	1 cut(s)	234
SchI	GAGTC	1 cut(s)	194
ScrFI	CCNGG	3 cut(s)	238, 416, 454
SduI	GDGCHC	3 cut(s)	80, 175, 322
SetI	ASST	7 cut(s)	51, 60, 96, 255, 328, 420, 573
SexAI	ACCWGGT	1 cut(s)	414
SmlI	CTYRAG	1 cut(s)	321
SmoI	CTYRAG	1 cut(s)	321
Sse9I	AATT	7 cut(s)	9, 101, 273, 279, 356, 370, 441
SseBI	AGGCCT	1 cut(s)	24
SsiI	CCGC	5 cut(s)	62, 85, 425, 542, 562
SspI	AATATT	1 cut(s)	209
StuI	AGGCCT	1 cut(s)	24
StyD4I	CCNGG	3 cut(s)	236, 414, 452
TaaI	ACNGT	1 cut(s)	295
TaiI	ACGT	1 cut(s)	573
TaqI	TCGA	3 cut(s)	80, 219, 307
TasI	AATT	7 cut(s)	9, 101, 273, 279, 356, 370, 441
TfiI	GAWTC	1 cut(s)	226
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TscAI	CASTG	1 cut(s)	526
TseI	GCWGC	1 cut(s)	449
TspRI	CASTG	1 cut(s)	526
XapI	RAATTY	3 cut(s)	101, 279, 356
XmnI	GAANNNNTTC	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.