Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0014324

Physical Location & Seq

Genomic Coordinates Reverse (-)

31841214 .. 31844238

Gene Structure 3025 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG276600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGCTACAATGATGAAACCAGGCGTCATTTGCACCCTAAATTCTCACCTCAACGAGCTTCCTCTTTTAGATTCGAGCTCGATCCATCTAAAGCTCAGAGAATCTGGGTTCTCTCACCGCAATGTGAATCTAAAACAGGCCAGAAATGCGTCGCTTGTTCCCGTCATAAGAGCCCAGAGCTCCCCTGATTATTTCCCGGACTCCCAGTTTTACAAAGTGGAAGCAATTCTAAGGCCTTGGAGGGTTCCGCAGGTTTCTGCGGCCCTACTTAAAATCGGTATCCGCGGTGTTACCATATCTGATGTTCGGGGCTTTGGTGCTCAAGGTGGTTCAAAAGAGAGACACGGTGGCTCTGAATTTGCTGAAGACAATTATGTTGCTAAAGTTAAAATGGAGATTGTAGTGATCAAAGACCAGGTTGAAGCAGTAGTTAGCAAGATAATTGAGGAGGCAAGAACTGGAGAAATTGGTGATGGCAAGATTTTCTGTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0000820 GO:0000821 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006521 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009628 GO:0009718 GO:0009743 GO:0009744 GO:0009812 GO:0009813 GO:0009889 GO:0010033 GO:0010307 GO:0010565 GO:0017076 GO:0019207 GO:0019216 GO:0019217 GO:0019220 GO:0019222 GO:0030234 GO:0030554 GO:0031323 GO:0031326 GO:0031976 GO:0031984 GO:0032553 GO:0032555 GO:0032559 GO:0033238 GO:0034285 GO:0035639 GO:0036094 GO:0042221 GO:0042304 GO:0042325 GO:0042440 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046283 GO:0046872 GO:0046890 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0062012 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0090368 GO:0097159 GO:0097367 GO:0098772 GO:1900079 GO:1901265 GO:1901363 GO:1901576 GO:1901700 GO:2000013 GO:2000282

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

P-II

Protein Analysis

164

Amino Acids

18.09

Weight (kDa)

8.93

Isoelectric Point (pI)

45.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
P-II	PF00543	72 - 163	5.6e-21	Nitrogen regulatory protein P-II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01900
fragaria_vesca	FvH4_1g26590 FvH4_1g26590
malus_domestica	MD09G1287900.v1.1 MD17G1280100.v1.1
prunus_persica	Prupe.3G005300_v2.0.a1
pyrus_communis	pycom09g19530 pycom17g27810
rosa_chinensis	RchiOBHm_Chr3g0486731
rosa_laevigata	RLG00000023066
rosa_roxburghii	Rroxscaffold_6G00395650
rosa_rugosa	Rorug03G0226900
rosa_samantha	Rh3AG276600 Rh3BG311400 Rh3CG310700 Rh3DG307200
rosa_wichuraiana	Rw3G024600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	241
AccII	CGCG	1 cut(s)	285
AciI	CCGC	5 cut(s)	118, 248, 260, 283, 285
AclWI	GGATC	1 cut(s)	76
AcsI	RAATTY	2 cut(s)	40, 356
AcuI	CTGAAG	1 cut(s)	384
AcyI	GRCGYC	1 cut(s)	24
AgsI	TTSAA	2 cut(s)	333, 422
AjnI	CCWGG	2 cut(s)	19, 414
AluBI	AGCT	4 cut(s)	58, 78, 94, 180
AluI	AGCT	4 cut(s)	58, 78, 94, 180
Alw21I	GWGCWC	3 cut(s)	80, 182, 322
Alw26I	GTCTC	1 cut(s)	334
AlwI	GGATC	1 cut(s)	76
AoxI	GGCC	3 cut(s)	138, 233, 261
ApoI	RAATTY	2 cut(s)	40, 356
Asp700I	GAANNNNTTC	1 cut(s)	225
AspS9I	GGNCC	1 cut(s)	262
AsuC2I	CCSGG	1 cut(s)	197
AsuHPI	GGTGA	3 cut(s)	38, 107, 482
BanII	GRGCYC	3 cut(s)	80, 175, 182
BbsI	GAAGAC	1 cut(s)	372
Bbv12I	GWGCWC	3 cut(s)	80, 182, 322
BccI	CCATC	2 cut(s)	93, 467
BciT130I	CCWGG	2 cut(s)	21, 416
BciVI	GTATCC	1 cut(s)	290
BclI	TGATCA	1 cut(s)	405
BcnI	CCSGG	1 cut(s)	197
BcoDI	GTCTC	1 cut(s)	334
BfuAI	ACCTGC	1 cut(s)	241
BfuI	GTATCC	1 cut(s)	290
BisI	GCNGC	1 cut(s)	261
BlsI	GCNGC	1 cut(s)	262
Bme1390I	CCNGG	3 cut(s)	21, 197, 416
BmgT120I	GGNCC	1 cut(s)	262
BmiI	GGNNCC	1 cut(s)	246
BmrFI	CCNGG	3 cut(s)	21, 197, 416
BmrI	ACTGGG	1 cut(s)	199
BmuI	ACTGGG	1 cut(s)	199
BpiI	GAAGAC	1 cut(s)	372
BpmI	CTGGAG	1 cut(s)	480
BpuEI	CTTGAG	1 cut(s)	306
BpuMI	CCSGG	1 cut(s)	197
BsaHI	GRCGYC	1 cut(s)	24
BsaJI	CCNNGG	2 cut(s)	236, 283
Bse1I	ACTGG	2 cut(s)	205, 463
Bse3DI	GCAATG	1 cut(s)	127
BseBI	CCWGG	2 cut(s)	21, 416
BseDI	CCNNGG	2 cut(s)	236, 283
BseMI	GCAATG	1 cut(s)	127
BseMII	CTCAG	1 cut(s)	109
BseNI	ACTGG	2 cut(s)	205, 463
BseRI	GAGGAG	1 cut(s)	461
Bsh1236I	CGCG	1 cut(s)	285
BshFI	GGCC	3 cut(s)	140, 235, 263
BsiHKAI	GWGCWC	3 cut(s)	80, 182, 322
BsiSI	CCGG	1 cut(s)	197
BsmAI	GTCTC	1 cut(s)	334
BsnI	GGCC	3 cut(s)	140, 235, 263
Bsp1286I	GDGCHC	4 cut(s)	80, 175, 182, 322
Bsp143I	GATC	2 cut(s)	81, 405
BspACI	CCGC	5 cut(s)	118, 248, 260, 283, 285
BspANI	GGCC	3 cut(s)	140, 235, 263
BspCNI	CTCAG	1 cut(s)	108
BspFNI	CGCG	1 cut(s)	285
BspLI	GGNNCC	1 cut(s)	246
BspMI	ACCTGC	1 cut(s)	241
BspPI	GGATC	1 cut(s)	76
BsrDI	GCAATG	1 cut(s)	127
BsrI	ACTGG	2 cut(s)	205, 463
BssECI	CCNNGG	2 cut(s)	236, 283
BssMI	GATC	2 cut(s)	81, 405
BssNI	GRCGYC	1 cut(s)	24
BssT1I	CCWWGG	1 cut(s)	236
Bst2UI	CCWGG	2 cut(s)	21, 416
Bst4CI	ACNGT	1 cut(s)	347
BstACI	GRCGYC	1 cut(s)	24
BstDEI	CTNAG	2 cut(s)	95, 230
BstDSI	CCRYGG	1 cut(s)	283
BstFNI	CGCG	1 cut(s)	285
BstKTI	GATC	2 cut(s)	84, 408
BstMAI	GTCTC	1 cut(s)	334
BstMBI	GATC	2 cut(s)	81, 405
BstMWI	GCNNNNNNNGC	2 cut(s)	30, 146
BstNI	CCWGG	2 cut(s)	21, 416
BstSCI	CCNGG	3 cut(s)	19, 195, 414
BstUI	CGCG	1 cut(s)	285
BstV2I	GAAGAC	1 cut(s)	372
BsuI	GTATCC	1 cut(s)	290
BsuRI	GGCC	3 cut(s)	140, 235, 263
BtgI	CCRYGG	1 cut(s)	283
BveI	ACCTGC	1 cut(s)	241
Cfr13I	GGNCC	1 cut(s)	262
Cfr42I	CCGCGG	1 cut(s)	286
CseI	GACGC	2 cut(s)	13, 138
CsiI	ACCWGGT	1 cut(s)	414
DdeI	CTNAG	2 cut(s)	95, 230
DpnI	GATC	2 cut(s)	83, 407
DpnII	GATC	2 cut(s)	81, 405
Ecl136II	GAGCTC	2 cut(s)	78, 180
Eco130I	CCWWGG	1 cut(s)	236
Eco147I	AGGCCT	1 cut(s)	235
Eco24I	GRGCYC	3 cut(s)	80, 175, 182
Eco53kI	GAGCTC	2 cut(s)	78, 180
Eco57I	CTGAAG	1 cut(s)	384
EcoICRI	GAGCTC	2 cut(s)	78, 180
EcoRII	CCWGG	2 cut(s)	19, 414
EcoT14I	CCWWGG	1 cut(s)	236
EcoT38I	GRGCYC	3 cut(s)	80, 175, 182
ErhI	CCWWGG	1 cut(s)	236
FaiI	YATR	3 cut(s)	167, 296, 375
FbaI	TGATCA	1 cut(s)	405
Fnu4HI	GCNGC	1 cut(s)	261
FriOI	GRGCYC	3 cut(s)	80, 175, 182
Fsp4HI	GCNGC	1 cut(s)	261
GluI	GCNGC	1 cut(s)	261
GsuI	CTGGAG	1 cut(s)	480
HaeIII	GGCC	3 cut(s)	140, 235, 263
HapII	CCGG	1 cut(s)	197
HgaI	GACGC	2 cut(s)	13, 138
Hin1I	GRCGYC	1 cut(s)	24
HinfI	GANTC	4 cut(s)	71, 101, 127, 200
HpaII	CCGG	1 cut(s)	197
HphI	GGTGA	3 cut(s)	38, 107, 482
Hpy188I	TCNGA	3 cut(s)	98, 301, 355
Hpy99I	CGWCG	1 cut(s)	154
HpyCH4III	ACNGT	1 cut(s)	347
HpyCH4V	TGCA	1 cut(s)	33
HpyF10VI	GCNNNNNNNGC	2 cut(s)	30, 146
HpyF3I	CTNAG	2 cut(s)	95, 230
Hsp92I	GRCGYC	1 cut(s)	24
Ksp22I	TGATCA	1 cut(s)	405
KspI	CCGCGG	1 cut(s)	286
Kzo9I	GATC	2 cut(s)	81, 405
LmnI	GCTCC	1 cut(s)	185
MabI	ACCWGGT	1 cut(s)	414
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	2 cut(s)	83, 407
MboI	GATC	2 cut(s)	81, 405
MboII	GAAGA	1 cut(s)	377
MhlI	GDGCHC	4 cut(s)	80, 175, 182, 322
MluCI	AATT	6 cut(s)	40, 225, 356, 370, 441, 465
MlyI	GAGTC	1 cut(s)	194
MnlI	CCTC	5 cut(s)	59, 72, 234, 439, 442
MroXI	GAANNNNTTC	1 cut(s)	225
MseI	TTAA	2 cut(s)	270, 387
MslI	CAYNNNNRTG	1 cut(s)	120
MspA1I	CMGCKG	1 cut(s)	285
MspI	CCGG	1 cut(s)	197
MspR9I	CCNGG	3 cut(s)	21, 197, 416
MvaI	CCWGG	2 cut(s)	21, 416
MvnI	CGCG	1 cut(s)	285
MwoI	GCNNNNNNNGC	2 cut(s)	30, 146
NciI	CCSGG	1 cut(s)	197
NdeII	GATC	2 cut(s)	81, 405
NlaIV	GGNNCC	1 cut(s)	246
PceI	AGGCCT	1 cut(s)	235
PdmI	GAANNNNTTC	1 cut(s)	225
PfeI	GAWTC	3 cut(s)	71, 101, 127
PfoI	TCCNGGA	1 cut(s)	195
PkrI	GCNGC	1 cut(s)	262
PleI	GAGTC	1 cut(s)	194
PpsI	GAGTC	1 cut(s)	194
Psp124BI	GAGCTC	2 cut(s)	80, 182
Psp6I	CCWGG	2 cut(s)	19, 414
PspGI	CCWGG	2 cut(s)	19, 414
PspN4I	GGNNCC	1 cut(s)	246
PspPI	GGNCC	1 cut(s)	262
RseI	CAYNNNNRTG	1 cut(s)	120
SacI	GAGCTC	2 cut(s)	80, 182
SacII	CCGCGG	1 cut(s)	286
SaqAI	TTAA	2 cut(s)	270, 387
SatI	GCNGC	1 cut(s)	261
Sau3AI	GATC	2 cut(s)	81, 405
Sau96I	GGNCC	1 cut(s)	262
SchI	GAGTC	1 cut(s)	194
ScrFI	CCNGG	3 cut(s)	21, 197, 416
SduI	GDGCHC	4 cut(s)	80, 175, 182, 322
SetI	ASST	8 cut(s)	51, 60, 80, 96, 182, 255, 328, 420
SexAI	ACCWGGT	1 cut(s)	414
Sfr303I	CCGCGG	1 cut(s)	286
SgrBI	CCGCGG	1 cut(s)	286
SmiMI	CAYNNNNRTG	1 cut(s)	120
SmlI	CTYRAG	1 cut(s)	321
SmoI	CTYRAG	1 cut(s)	321
Sse9I	AATT	6 cut(s)	40, 225, 356, 370, 441, 465
SseBI	AGGCCT	1 cut(s)	235
SsiI	CCGC	5 cut(s)	118, 248, 260, 283, 285
SstI	GAGCTC	2 cut(s)	80, 182
StuI	AGGCCT	1 cut(s)	235
StyD4I	CCNGG	3 cut(s)	19, 195, 414
StyI	CCWWGG	1 cut(s)	236
TaaI	ACNGT	1 cut(s)	347
TaqI	TCGA	2 cut(s)	74, 80
TasI	AATT	6 cut(s)	40, 225, 356, 370, 441, 465
TauI	GCSGC	1 cut(s)	263
TfiI	GAWTC	3 cut(s)	71, 101, 127
Tru1I	TTAA	2 cut(s)	270, 387
Tru9I	TTAA	2 cut(s)	270, 387
TspDTI	ATGAA	1 cut(s)	29
XapI	RAATTY	2 cut(s)	40, 356
XmnI	GAANNNNTTC	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.