Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0014324

Physical Location & Seq

Genomic Coordinates Reverse (-)

31588526 .. 31592817

Gene Structure 4292 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG311400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGCTACAATGATGAAACCAGGCGTCATTTGCACCCTCAATTCTCACCTCAACGAGCCTCCTCTTTTAGATTCGAGCTCGATCCATCTAAAGCTCAGAGAATTTGGGTTCTCTCACCGCAATGTGAATCTAAAACAGGCCAGAAATGCGTCGCTTGTTCCCGTCATAAGAGCCCAGAGTTCCCCTGATTATTATTTCCCGGACTCCCAGTTTTACAAAGTGGAAGCAATTCTAAGGCCTTGGAGAGTTCCGCAGGTTTCTGCGGCCCTACTTAAAATCGGTATCCGCGGTGTTACCATATCTGATGTTCGGGGCTTTGGTGCTCAAGGTGGTTCAAAAGAGAGACACGGTGGCTCTGAATTTGCTGAAGACAATTATGTTGCTAAAGTTAAAATGGAGATTGTAGTGATCAAAGACCAGGTTGAAGCAGTAGTTAGCAAGATAATTGAGGAGGCAAGAACTGGAGAAATTGGTGATGGCAAGATTTTCTGTAAGTCTCAAAACTTCTTTATTAGCTGTAAAGTCATTTTTGACACAACTAATTTGCAATCTGAGATAGTCAACACCTTACCAGGTCAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0000820 GO:0000821 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006521 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009628 GO:0009718 GO:0009743 GO:0009744 GO:0009812 GO:0009813 GO:0009889 GO:0010033 GO:0010307 GO:0010565 GO:0017076 GO:0019207 GO:0019216 GO:0019217 GO:0019220 GO:0019222 GO:0030234 GO:0030554 GO:0031323 GO:0031326 GO:0031976 GO:0031984 GO:0032553 GO:0032555 GO:0032559 GO:0033238 GO:0034285 GO:0035639 GO:0036094 GO:0042221 GO:0042304 GO:0042325 GO:0042440 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046283 GO:0046872 GO:0046890 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0062012 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0090368 GO:0097159 GO:0097367 GO:0098772 GO:1900079 GO:1901265 GO:1901363 GO:1901576 GO:1901700 GO:2000013 GO:2000282

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

P-II

Protein Analysis

194

Amino Acids

21.43

Weight (kDa)

8.76

Isoelectric Point (pI)

46.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
P-II	PF00543	73 - 164	9.4e-21	Nitrogen regulatory protein P-II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0014324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01900
fragaria_vesca	FvH4_1g26590 FvH4_1g26590
malus_domestica	MD09G1287900.v1.1 MD17G1280100.v1.1
prunus_persica	Prupe.3G005300_v2.0.a1
pyrus_communis	pycom09g19530 pycom17g27810
rosa_chinensis	RchiOBHm_Chr3g0486731
rosa_laevigata	RLG00000023066
rosa_roxburghii	Rroxscaffold_6G00395650
rosa_rugosa	Rorug03G0226900
rosa_samantha	Rh3AG276600 Rh3BG311400 Rh3CG310700 Rh3DG307200
rosa_wichuraiana	Rw3G024600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	244
AccII	CGCG	1 cut(s)	288
AciI	CCGC	5 cut(s)	118, 251, 263, 286, 288
AclWI	GGATC	1 cut(s)	76
AcsI	RAATTY	2 cut(s)	101, 359
AcuI	CTGAAG	1 cut(s)	387
AcyI	GRCGYC	1 cut(s)	24
AfiI	CCNNNNNNNGG	1 cut(s)	578
AgsI	TTSAA	2 cut(s)	336, 425
AjnI	CCWGG	3 cut(s)	19, 417, 571
AluBI	AGCT	3 cut(s)	78, 94, 516
AluI	AGCT	3 cut(s)	78, 94, 516
Alw21I	GWGCWC	2 cut(s)	80, 325
Alw26I	GTCTC	2 cut(s)	337, 501
AlwI	GGATC	1 cut(s)	76
AoxI	GGCC	3 cut(s)	138, 236, 264
ApoI	RAATTY	2 cut(s)	101, 359
Asp700I	GAANNNNTTC	1 cut(s)	228
AspS9I	GGNCC	1 cut(s)	265
AsuC2I	CCSGG	1 cut(s)	200
AsuHPI	GGTGA	3 cut(s)	38, 107, 485
BanII	GRGCYC	2 cut(s)	80, 175
BbsI	GAAGAC	1 cut(s)	375
Bbv12I	GWGCWC	2 cut(s)	80, 325
BccI	CCATC	2 cut(s)	93, 470
BciT130I	CCWGG	3 cut(s)	21, 419, 573
BciVI	GTATCC	1 cut(s)	293
BclI	TGATCA	1 cut(s)	408
BcnI	CCSGG	1 cut(s)	200
BcoDI	GTCTC	2 cut(s)	337, 501
BfuAI	ACCTGC	1 cut(s)	244
BfuI	GTATCC	1 cut(s)	293
BisI	GCNGC	1 cut(s)	264
BlsI	GCNGC	1 cut(s)	265
Bme1390I	CCNGG	4 cut(s)	21, 200, 419, 573
BmgT120I	GGNCC	1 cut(s)	265
BmrFI	CCNGG	4 cut(s)	21, 200, 419, 573
BmrI	ACTGGG	1 cut(s)	202
BmuI	ACTGGG	1 cut(s)	202
BpiI	GAAGAC	1 cut(s)	375
BpmI	CTGGAG	1 cut(s)	483
BpuEI	CTTGAG	1 cut(s)	309
BpuMI	CCSGG	1 cut(s)	200
BsaHI	GRCGYC	1 cut(s)	24
BsaJI	CCNNGG	2 cut(s)	239, 286
Bsc4I	CCNNNNNNNGG	1 cut(s)	578
Bse1I	ACTGG	2 cut(s)	208, 466
Bse3DI	GCAATG	1 cut(s)	127
BseBI	CCWGG	3 cut(s)	21, 419, 573
BseDI	CCNNGG	2 cut(s)	239, 286
BseLI	CCNNNNNNNGG	1 cut(s)	578
BseMI	GCAATG	1 cut(s)	127
BseMII	CTCAG	2 cut(s)	109, 543
BseNI	ACTGG	2 cut(s)	208, 466
BseRI	GAGGAG	2 cut(s)	51, 464
Bsh1236I	CGCG	1 cut(s)	288
BshFI	GGCC	3 cut(s)	140, 238, 266
BsiHKAI	GWGCWC	2 cut(s)	80, 325
BsiSI	CCGG	1 cut(s)	200
BslI	CCNNNNNNNGG	1 cut(s)	578
BsmAI	GTCTC	2 cut(s)	337, 501
BsnI	GGCC	3 cut(s)	140, 238, 266
Bsp1286I	GDGCHC	3 cut(s)	80, 175, 325
Bsp143I	GATC	2 cut(s)	81, 408
BspACI	CCGC	5 cut(s)	118, 251, 263, 286, 288
BspANI	GGCC	3 cut(s)	140, 238, 266
BspCNI	CTCAG	2 cut(s)	108, 544
BspFNI	CGCG	1 cut(s)	288
BspMI	ACCTGC	1 cut(s)	244
BspPI	GGATC	1 cut(s)	76
BsrDI	GCAATG	1 cut(s)	127
BsrI	ACTGG	2 cut(s)	208, 466
BssECI	CCNNGG	2 cut(s)	239, 286
BssMI	GATC	2 cut(s)	81, 408
BssNI	GRCGYC	1 cut(s)	24
BssT1I	CCWWGG	1 cut(s)	239
Bst2UI	CCWGG	3 cut(s)	21, 419, 573
Bst4CI	ACNGT	1 cut(s)	350
BstACI	GRCGYC	1 cut(s)	24
BstDEI	CTNAG	3 cut(s)	95, 233, 552
BstDSI	CCRYGG	1 cut(s)	286
BstFNI	CGCG	1 cut(s)	288
BstKTI	GATC	2 cut(s)	84, 411
BstMAI	GTCTC	2 cut(s)	337, 501
BstMBI	GATC	2 cut(s)	81, 408
BstMWI	GCNNNNNNNGC	2 cut(s)	30, 146
BstNI	CCWGG	3 cut(s)	21, 419, 573
BstSCI	CCNGG	4 cut(s)	19, 198, 417, 571
BstUI	CGCG	1 cut(s)	288
BstV2I	GAAGAC	1 cut(s)	375
BsuI	GTATCC	1 cut(s)	293
BsuRI	GGCC	3 cut(s)	140, 238, 266
BtgI	CCRYGG	1 cut(s)	286
BveI	ACCTGC	1 cut(s)	244
Cfr13I	GGNCC	1 cut(s)	265
Cfr42I	CCGCGG	1 cut(s)	289
CseI	GACGC	2 cut(s)	13, 138
CsiI	ACCWGGT	2 cut(s)	417, 571
DdeI	CTNAG	3 cut(s)	95, 233, 552
DpnI	GATC	2 cut(s)	83, 410
DpnII	GATC	2 cut(s)	81, 408
Ecl136II	GAGCTC	1 cut(s)	78
Eco130I	CCWWGG	1 cut(s)	239
Eco147I	AGGCCT	1 cut(s)	238
Eco24I	GRGCYC	2 cut(s)	80, 175
Eco53kI	GAGCTC	1 cut(s)	78
Eco57I	CTGAAG	1 cut(s)	387
EcoICRI	GAGCTC	1 cut(s)	78
EcoRII	CCWGG	3 cut(s)	19, 417, 571
EcoT14I	CCWWGG	1 cut(s)	239
EcoT38I	GRGCYC	2 cut(s)	80, 175
ErhI	CCWWGG	1 cut(s)	239
FaiI	YATR	3 cut(s)	167, 299, 378
FbaI	TGATCA	1 cut(s)	408
Fnu4HI	GCNGC	1 cut(s)	264
FriOI	GRGCYC	2 cut(s)	80, 175
Fsp4HI	GCNGC	1 cut(s)	264
GluI	GCNGC	1 cut(s)	264
GsuI	CTGGAG	1 cut(s)	483
HaeIII	GGCC	3 cut(s)	140, 238, 266
HapII	CCGG	1 cut(s)	200
HgaI	GACGC	2 cut(s)	13, 138
Hin1I	GRCGYC	1 cut(s)	24
HincII	GTYRAC	1 cut(s)	562
HindII	GTYRAC	1 cut(s)	562
HinfI	GANTC	3 cut(s)	71, 127, 203
HpaII	CCGG	1 cut(s)	200
HphI	GGTGA	3 cut(s)	38, 107, 485
Hpy166II	GTNNAC	1 cut(s)	562
Hpy188I	TCNGA	4 cut(s)	98, 304, 358, 553
Hpy8I	GTNNAC	1 cut(s)	562
Hpy99I	CGWCG	1 cut(s)	154
HpyCH4III	ACNGT	1 cut(s)	350
HpyCH4V	TGCA	2 cut(s)	33, 547
HpyF10VI	GCNNNNNNNGC	2 cut(s)	30, 146
HpyF3I	CTNAG	3 cut(s)	95, 233, 552
Hsp92I	GRCGYC	1 cut(s)	24
Ksp22I	TGATCA	1 cut(s)	408
KspI	CCGCGG	1 cut(s)	289
Kzo9I	GATC	2 cut(s)	81, 408
MabI	ACCWGGT	2 cut(s)	417, 571
MaeIII	GTNAC	1 cut(s)	292
MalI	GATC	2 cut(s)	83, 410
MboI	GATC	2 cut(s)	81, 408
MboII	GAAGA	1 cut(s)	380
MhlI	GDGCHC	3 cut(s)	80, 175, 325
MluCI	AATT	8 cut(s)	40, 101, 228, 359, 373, 444, 468, 541
MlyI	GAGTC	1 cut(s)	197
MnlI	CCTC	6 cut(s)	47, 59, 69, 72, 442, 445
MroXI	GAANNNNTTC	1 cut(s)	228
MseI	TTAA	2 cut(s)	273, 390
MslI	CAYNNNNRTG	1 cut(s)	120
MspA1I	CMGCKG	1 cut(s)	288
MspI	CCGG	1 cut(s)	200
MspR9I	CCNGG	4 cut(s)	21, 200, 419, 573
MvaI	CCWGG	3 cut(s)	21, 419, 573
MvnI	CGCG	1 cut(s)	288
MwoI	GCNNNNNNNGC	2 cut(s)	30, 146
NciI	CCSGG	1 cut(s)	200
NdeII	GATC	2 cut(s)	81, 408
PceI	AGGCCT	1 cut(s)	238
PdmI	GAANNNNTTC	1 cut(s)	228
PfeI	GAWTC	2 cut(s)	71, 127
PfoI	TCCNGGA	1 cut(s)	198
PkrI	GCNGC	1 cut(s)	265
PleI	GAGTC	1 cut(s)	197
PpsI	GAGTC	1 cut(s)	197
Psp124BI	GAGCTC	1 cut(s)	80
Psp6I	CCWGG	3 cut(s)	19, 417, 571
PspGI	CCWGG	3 cut(s)	19, 417, 571
PspPI	GGNCC	1 cut(s)	265
RseI	CAYNNNNRTG	1 cut(s)	120
SacI	GAGCTC	1 cut(s)	80
SacII	CCGCGG	1 cut(s)	289
SaqAI	TTAA	2 cut(s)	273, 390
SatI	GCNGC	1 cut(s)	264
Sau3AI	GATC	2 cut(s)	81, 408
Sau96I	GGNCC	1 cut(s)	265
SchI	GAGTC	1 cut(s)	197
ScrFI	CCNGG	4 cut(s)	21, 200, 419, 573
SduI	GDGCHC	3 cut(s)	80, 175, 325
SetI	ASST	9 cut(s)	51, 80, 96, 258, 331, 423, 518, 569, 577
SexAI	ACCWGGT	2 cut(s)	417, 571
Sfr303I	CCGCGG	1 cut(s)	289
SgrBI	CCGCGG	1 cut(s)	289
SmiMI	CAYNNNNRTG	1 cut(s)	120
SmlI	CTYRAG	1 cut(s)	324
SmoI	CTYRAG	1 cut(s)	324
Sse9I	AATT	8 cut(s)	40, 101, 228, 359, 373, 444, 468, 541
SseBI	AGGCCT	1 cut(s)	238
SsiI	CCGC	5 cut(s)	118, 251, 263, 286, 288
SstI	GAGCTC	1 cut(s)	80
StuI	AGGCCT	1 cut(s)	238
StyD4I	CCNGG	4 cut(s)	19, 198, 417, 571
StyI	CCWWGG	1 cut(s)	239
TaaI	ACNGT	1 cut(s)	350
TaqI	TCGA	2 cut(s)	74, 80
TasI	AATT	8 cut(s)	40, 101, 228, 359, 373, 444, 468, 541
TauI	GCSGC	1 cut(s)	266
TfiI	GAWTC	2 cut(s)	71, 127
Tru1I	TTAA	2 cut(s)	273, 390
Tru9I	TTAA	2 cut(s)	273, 390
TspDTI	ATGAA	1 cut(s)	29
XapI	RAATTY	2 cut(s)	101, 359
XmnI	GAANNNNTTC	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.