Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014324

Physical Location & Seq

Genomic Coordinates Reverse (-)

33576945 .. 33580734

Gene Structure 3790 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45121

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGCTACAATGATGAAACCAGGCGTCATTTGCACCCTAAATTCTCACCTCAACGAGCTTCCTCTTTTAGATTCGAGCTCGATCCATCTAAAGCTCAGAGAATCTGGGTTCTCTCACCGCAATGTGAATCTAAAACAGGCCAGAAATGCGTCGCTTGTTCCCGTCATAAGAGCCCAGAGCTCCCCTGATTATTTCCCGGACTCCCAGTTTTACAAAGTGGAAGCAATTCTAAGGCCTTGGAGGGTTCCGCAGGTTTCTGCGGCCCTACTTAAAATCGGTATCCGCGGTGTTACCATATCTGATGTTCGGGGCTTTGGTGCTCAAGGTGGTTCAAAAGAGAGACACGGTGGCTCTGAATTTGCTGAAGACAATTATGTTGCTAAAGTTAAAATGGAGATTGTAGTGATCAAAGACCAGGTTGAAGCAGTAGTTAGCAAGATAATTGAGGAGGCAAGAACTGGAGAAATTGGTGATGGCAAGATTTTCTTGGTGCCGGTCTCAGACGTAATTAGAGTTCGCACTGGGGAGCGCGGAGAGAAGGCGGAGAAGATGACCGGAGGGCTATCTGACACATCCTCTACCTCTGCTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0000820 GO:0000821 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006521 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009628 GO:0009718 GO:0009743 GO:0009744 GO:0009812 GO:0009813 GO:0009889 GO:0010033 GO:0010307 GO:0010565 GO:0017076 GO:0019207 GO:0019216 GO:0019217 GO:0019220 GO:0019222 GO:0030234 GO:0030554 GO:0031323 GO:0031326 GO:0031976 GO:0031984 GO:0032553 GO:0032555 GO:0032559 GO:0033238 GO:0034285 GO:0035639 GO:0036094 GO:0042221 GO:0042304 GO:0042325 GO:0042440 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046283 GO:0046872 GO:0046890 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0062012 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0090368 GO:0097159 GO:0097367 GO:0098772 GO:1900079 GO:1901265 GO:1901363 GO:1901576 GO:1901700 GO:2000013 GO:2000282

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

P-II

Protein Analysis

197

Amino Acids

21.42

Weight (kDa)

9.01

Isoelectric Point (pI)

40.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
P-II	PF00543	72 - 176	2.7e-27	Nitrogen regulatory protein P-II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01900
fragaria_vesca	FvH4_1g26590 FvH4_1g26590
malus_domestica	MD09G1287900.v1.1 MD17G1280100.v1.1
prunus_persica	Prupe.3G005300_v2.0.a1
pyrus_communis	pycom09g19530 pycom17g27810
rosa_chinensis	RchiOBHm_Chr3g0486731
rosa_laevigata	RLG00000023066
rosa_roxburghii	Rroxscaffold_6G00395650
rosa_rugosa	Rorug03G0226900
rosa_samantha	Rh3AG276600 Rh3BG311400 Rh3CG310700 Rh3DG307200
rosa_wichuraiana	Rw3G024600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	241
AccB1I	GGYRCC	1 cut(s)	490
AccII	CGCG	2 cut(s)	285, 531
AciI	CCGC	7 cut(s)	118, 248, 260, 283, 285, 531, 542
AclWI	GGATC	1 cut(s)	76
AcsI	RAATTY	2 cut(s)	40, 356
AcuI	CTGAAG	1 cut(s)	384
AcyI	GRCGYC	1 cut(s)	24
AgsI	TTSAA	2 cut(s)	333, 422
AjnI	CCWGG	2 cut(s)	19, 414
AluBI	AGCT	4 cut(s)	58, 78, 94, 180
AluI	AGCT	4 cut(s)	58, 78, 94, 180
Alw21I	GWGCWC	3 cut(s)	80, 182, 322
Alw26I	GTCTC	2 cut(s)	334, 502
AlwI	GGATC	1 cut(s)	76
AoxI	GGCC	3 cut(s)	138, 233, 261
ApoI	RAATTY	2 cut(s)	40, 356
Asp700I	GAANNNNTTC	1 cut(s)	225
AspLEI	GCGC	1 cut(s)	531
AspS9I	GGNCC	1 cut(s)	262
AsuC2I	CCSGG	1 cut(s)	197
AsuHPI	GGTGA	3 cut(s)	38, 107, 482
BanI	GGYRCC	1 cut(s)	490
BanII	GRGCYC	3 cut(s)	80, 175, 182
BbsI	GAAGAC	1 cut(s)	372
Bbv12I	GWGCWC	3 cut(s)	80, 182, 322
BccI	CCATC	2 cut(s)	93, 467
BciT130I	CCWGG	2 cut(s)	21, 416
BciVI	GTATCC	1 cut(s)	290
BclI	TGATCA	1 cut(s)	405
BcnI	CCSGG	1 cut(s)	197
BcoDI	GTCTC	2 cut(s)	334, 502
BfuAI	ACCTGC	1 cut(s)	241
BfuI	GTATCC	1 cut(s)	290
BisI	GCNGC	1 cut(s)	261
BlsI	GCNGC	1 cut(s)	262
Bme1390I	CCNGG	3 cut(s)	21, 197, 416
BmgT120I	GGNCC	1 cut(s)	262
BmiI	GGNNCC	2 cut(s)	246, 492
BmrFI	CCNGG	3 cut(s)	21, 197, 416
BmrI	ACTGGG	2 cut(s)	199, 531
BmuI	ACTGGG	2 cut(s)	199, 531
BpiI	GAAGAC	1 cut(s)	372
BpmI	CTGGAG	1 cut(s)	480
BpuEI	CTTGAG	1 cut(s)	306
BpuMI	CCSGG	1 cut(s)	197
BsaHI	GRCGYC	1 cut(s)	24
BsaI	GGTCTC	1 cut(s)	502
BsaJI	CCNNGG	2 cut(s)	236, 283
BsaWI	WCCGGW	1 cut(s)	554
Bse118I	RCCGGY	1 cut(s)	493
Bse1I	ACTGG	3 cut(s)	205, 463, 526
Bse3DI	GCAATG	1 cut(s)	127
BseBI	CCWGG	2 cut(s)	21, 416
BseDI	CCNNGG	2 cut(s)	236, 283
BseGI	GGATG	1 cut(s)	572
BseMI	GCAATG	1 cut(s)	127
BseMII	CTCAG	2 cut(s)	109, 513
BseNI	ACTGG	3 cut(s)	205, 463, 526
BseRI	GAGGAG	1 cut(s)	461
Bsh1236I	CGCG	2 cut(s)	285, 531
BshFI	GGCC	3 cut(s)	140, 235, 263
BshNI	GGYRCC	1 cut(s)	490
BsiHKAI	GWGCWC	3 cut(s)	80, 182, 322
BsiSI	CCGG	3 cut(s)	197, 494, 555
BsmAI	GTCTC	2 cut(s)	334, 502
BsnI	GGCC	3 cut(s)	140, 235, 263
Bso31I	GGTCTC	1 cut(s)	502
Bsp1286I	GDGCHC	4 cut(s)	80, 175, 182, 322
Bsp143I	GATC	2 cut(s)	81, 405
BspACI	CCGC	7 cut(s)	118, 248, 260, 283, 285, 531, 542
BspANI	GGCC	3 cut(s)	140, 235, 263
BspCNI	CTCAG	2 cut(s)	108, 512
BspFNI	CGCG	2 cut(s)	285, 531
BspLI	GGNNCC	2 cut(s)	246, 492
BspMI	ACCTGC	1 cut(s)	241
BspPI	GGATC	1 cut(s)	76
BspT107I	GGYRCC	1 cut(s)	490
BspTNI	GGTCTC	1 cut(s)	502
BsrDI	GCAATG	1 cut(s)	127
BsrFI	RCCGGY	1 cut(s)	493
BsrI	ACTGG	3 cut(s)	205, 463, 526
BssAI	RCCGGY	1 cut(s)	493
BssECI	CCNNGG	2 cut(s)	236, 283
BssMI	GATC	2 cut(s)	81, 405
BssNI	GRCGYC	1 cut(s)	24
BssT1I	CCWWGG	1 cut(s)	236
Bst2UI	CCWGG	2 cut(s)	21, 416
Bst4CI	ACNGT	1 cut(s)	347
BstACI	GRCGYC	1 cut(s)	24
BstDEI	CTNAG	3 cut(s)	95, 230, 499
BstDSI	CCRYGG	1 cut(s)	283
BstF5I	GGATG	1 cut(s)	572
BstFNI	CGCG	2 cut(s)	285, 531
BstHHI	GCGC	1 cut(s)	531
BstKTI	GATC	2 cut(s)	84, 408
BstMAI	GTCTC	2 cut(s)	334, 502
BstMBI	GATC	2 cut(s)	81, 405
BstMWI	GCNNNNNNNGC	2 cut(s)	30, 146
BstNI	CCWGG	2 cut(s)	21, 416
BstSCI	CCNGG	3 cut(s)	19, 195, 414
BstUI	CGCG	2 cut(s)	285, 531
BstV2I	GAAGAC	1 cut(s)	372
BsuI	GTATCC	1 cut(s)	290
BsuRI	GGCC	3 cut(s)	140, 235, 263
BtgI	CCRYGG	1 cut(s)	283
BtsCI	GGATG	1 cut(s)	572
BtsIMutI	CAGTG	1 cut(s)	519
BveI	ACCTGC	1 cut(s)	241
CfoI	GCGC	1 cut(s)	531
Cfr10I	RCCGGY	1 cut(s)	493
Cfr13I	GGNCC	1 cut(s)	262
Cfr42I	CCGCGG	1 cut(s)	286
CseI	GACGC	2 cut(s)	13, 138
CsiI	ACCWGGT	1 cut(s)	414
DdeI	CTNAG	3 cut(s)	95, 230, 499
DpnI	GATC	2 cut(s)	83, 407
DpnII	GATC	2 cut(s)	81, 405
EciI	GGCGGA	1 cut(s)	557
Ecl136II	GAGCTC	2 cut(s)	78, 180
Eco130I	CCWWGG	1 cut(s)	236
Eco147I	AGGCCT	1 cut(s)	235
Eco24I	GRGCYC	3 cut(s)	80, 175, 182
Eco31I	GGTCTC	1 cut(s)	502
Eco53kI	GAGCTC	2 cut(s)	78, 180
Eco57I	CTGAAG	1 cut(s)	384
EcoICRI	GAGCTC	2 cut(s)	78, 180
EcoRII	CCWGG	2 cut(s)	19, 414
EcoT14I	CCWWGG	1 cut(s)	236
EcoT38I	GRGCYC	3 cut(s)	80, 175, 182
ErhI	CCWWGG	1 cut(s)	236
FaiI	YATR	3 cut(s)	167, 296, 375
FalI	AAGNNNNNCTT	2 cut(s)	470, 502
FbaI	TGATCA	1 cut(s)	405
Fnu4HI	GCNGC	1 cut(s)	261
FokI	GGATG	1 cut(s)	559
FriOI	GRGCYC	3 cut(s)	80, 175, 182
Fsp4HI	GCNGC	1 cut(s)	261
GlaI	GCGC	1 cut(s)	530
GluI	GCNGC	1 cut(s)	261
GsuI	CTGGAG	1 cut(s)	480
HaeIII	GGCC	3 cut(s)	140, 235, 263
HapII	CCGG	3 cut(s)	197, 494, 555
HgaI	GACGC	2 cut(s)	13, 138
HhaI	GCGC	1 cut(s)	531
Hin1I	GRCGYC	1 cut(s)	24
Hin6I	GCGC	1 cut(s)	529
HinP1I	GCGC	1 cut(s)	529
HinfI	GANTC	4 cut(s)	71, 101, 127, 200
HpaII	CCGG	3 cut(s)	197, 494, 555
HphI	GGTGA	3 cut(s)	38, 107, 482
Hpy188I	TCNGA	5 cut(s)	98, 301, 355, 502, 568
Hpy99I	CGWCG	1 cut(s)	154
HpyAV	CCTTC	1 cut(s)	532
HpyCH4III	ACNGT	1 cut(s)	347
HpyCH4IV	ACGT	1 cut(s)	504
HpyCH4V	TGCA	1 cut(s)	33
HpyF10VI	GCNNNNNNNGC	2 cut(s)	30, 146
HpyF3I	CTNAG	3 cut(s)	95, 230, 499
HpySE526I	ACGT	1 cut(s)	504
Hsp92I	GRCGYC	1 cut(s)	24
HspAI	GCGC	1 cut(s)	529
Ksp22I	TGATCA	1 cut(s)	405
KspI	CCGCGG	1 cut(s)	286
Kzo9I	GATC	2 cut(s)	81, 405
LmnI	GCTCC	2 cut(s)	185, 526
MabI	ACCWGGT	1 cut(s)	414
MaeII	ACGT	1 cut(s)	504
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	2 cut(s)	83, 407
MboI	GATC	2 cut(s)	81, 405
MboII	GAAGA	2 cut(s)	377, 559
MhlI	GDGCHC	4 cut(s)	80, 175, 182, 322
MluCI	AATT	7 cut(s)	40, 225, 356, 370, 441, 465, 507
MlyI	GAGTC	1 cut(s)	194
MnlI	CCTC	8 cut(s)	59, 72, 234, 439, 442, 551, 586, 592
MroXI	GAANNNNTTC	1 cut(s)	225
MseI	TTAA	2 cut(s)	270, 387
MslI	CAYNNNNRTG	1 cut(s)	120
MspA1I	CMGCKG	1 cut(s)	285
MspI	CCGG	3 cut(s)	197, 494, 555
MspR9I	CCNGG	3 cut(s)	21, 197, 416
MvaI	CCWGG	2 cut(s)	21, 416
MvnI	CGCG	2 cut(s)	285, 531
MwoI	GCNNNNNNNGC	2 cut(s)	30, 146
NciI	CCSGG	1 cut(s)	197
NdeII	GATC	2 cut(s)	81, 405
NlaIV	GGNNCC	2 cut(s)	246, 492
PceI	AGGCCT	1 cut(s)	235
PdmI	GAANNNNTTC	1 cut(s)	225
PfeI	GAWTC	3 cut(s)	71, 101, 127
PfoI	TCCNGGA	1 cut(s)	195
PkrI	GCNGC	1 cut(s)	262
PleI	GAGTC	1 cut(s)	194
PpsI	GAGTC	1 cut(s)	194
Psp124BI	GAGCTC	2 cut(s)	80, 182
Psp6I	CCWGG	2 cut(s)	19, 414
PspGI	CCWGG	2 cut(s)	19, 414
PspN4I	GGNNCC	2 cut(s)	246, 492
PspPI	GGNCC	1 cut(s)	262
PsrI	GAACNNNNNNTAC	2 cut(s)	498, 530
RseI	CAYNNNNRTG	1 cut(s)	120
SacI	GAGCTC	2 cut(s)	80, 182
SacII	CCGCGG	1 cut(s)	286
SaqAI	TTAA	2 cut(s)	270, 387
SatI	GCNGC	1 cut(s)	261
Sau3AI	GATC	2 cut(s)	81, 405
Sau96I	GGNCC	1 cut(s)	262
SchI	GAGTC	1 cut(s)	194
ScrFI	CCNGG	3 cut(s)	21, 197, 416
SduI	GDGCHC	4 cut(s)	80, 175, 182, 322
SexAI	ACCWGGT	1 cut(s)	414
Sfr303I	CCGCGG	1 cut(s)	286
SgrBI	CCGCGG	1 cut(s)	286
SmiMI	CAYNNNNRTG	1 cut(s)	120
SmlI	CTYRAG	1 cut(s)	321
SmoI	CTYRAG	1 cut(s)	321
Sse9I	AATT	7 cut(s)	40, 225, 356, 370, 441, 465, 507
SseBI	AGGCCT	1 cut(s)	235
SsiI	CCGC	7 cut(s)	118, 248, 260, 283, 285, 531, 542
SstI	GAGCTC	2 cut(s)	80, 182
StuI	AGGCCT	1 cut(s)	235
StyD4I	CCNGG	3 cut(s)	19, 195, 414
StyI	CCWWGG	1 cut(s)	236
TaaI	ACNGT	1 cut(s)	347
TaiI	ACGT	1 cut(s)	507
TaqI	TCGA	2 cut(s)	74, 80
TasI	AATT	7 cut(s)	40, 225, 356, 370, 441, 465, 507
TauI	GCSGC	1 cut(s)	263
TfiI	GAWTC	3 cut(s)	71, 101, 127
Tru1I	TTAA	2 cut(s)	270, 387
Tru9I	TTAA	2 cut(s)	270, 387
TscAI	CASTG	1 cut(s)	526
TspDTI	ATGAA	1 cut(s)	29
TspRI	CASTG	1 cut(s)	526
XapI	RAATTY	2 cut(s)	40, 356
XmnI	GAANNNNTTC	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.