Component of the post-replicative DNA mismatch repair system (MMR)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G02070 AT4G02070 |
| fragaria_vesca | FvH4_5g39410 FvH4_5g39410 FvH4_5g39410 FvH4_5g39410 |
| malus_domestica | MD01G1013000.v1.1 MD03G1296000.v1.1 MD11G1315400.v1.1 |
| prunus_persica | Prupe.8G271300_v2.0.a1 Prupe.8G271300_v2.0.a1 Prupe.8G271300_v2.0.a1 Prupe.8G271300_v2.0.a1 |
| pyrus_communis | pycom03g23420 pycom11g27540 |
| rosa_laevigata | RLG00000000552 |
| rosa_multiflora | Rmu_sc0022843.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00218800 |
| rosa_samantha | Rh7CG517400 Rh7DG485900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 1998, 2428 |
| AccB1I | GGYRCC | 1 cut(s) | 1976 |
| AccI | GTMKAC | 1 cut(s) | 1047 |
| AccII | CGCG | 1 cut(s) | 1443 |
| AccIII | TCCGGA | 4 cut(s) | 1303, 1504, 2316, 3372 |
| AciI | CCGC | 9 cut(s) | 27, 194, 829, 1033, 2284, 2533, 3085, 3440, 3530 |
| AclI | AACGTT | 2 cut(s) | 2067, 3744 |
| AclWI | GGATC | 1 cut(s) | 1088 |
| AcoI | YGGCCR | 1 cut(s) | 3945 |
| AcsI | RAATTY | 9 cut(s) | 1028, 1211, 1312, 1787, 2312, 2447, 2699, 3363, 3806 |
| AcuI | CTGAAG | 3 cut(s) | 1554, 1956, 2966 |
| AcyI | GRCGYC | 1 cut(s) | 1072 |
| AfaI | GTAC | 7 cut(s) | 285, 2303, 2442, 3192, 3540, 3777, 3821 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 75, 260, 1039, 1295, 1630, 2654, 3256, 3257 |
| AflIII | ACRYGT | 4 cut(s) | 978, 1240, 2638, 3033 |
| AhlI | ACTAGT | 1 cut(s) | 836 |
| AjiI | CACGTC | 2 cut(s) | 2639, 3034 |
| AjnI | CCWGG | 5 cut(s) | 259, 1953, 2528, 2554, 3712 |
| Alw21I | GWGCWC | 3 cut(s) | 1015, 1572, 3549 |
| AlwI | GGATC | 1 cut(s) | 1088 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 3437, 3899 |
| Aor13HI | TCCGGA | 4 cut(s) | 1303, 1504, 2316, 3372 |
| AoxI | GGCC | 8 cut(s) | 398, 1144, 1524, 1621, 1679, 2940, 3247, 3945 |
| ApeKI | GCWGC | 6 cut(s) | 52, 2080, 2099, 2102, 2536, 3857 |
| ApoI | RAATTY | 9 cut(s) | 1028, 1211, 1312, 1787, 2312, 2447, 2699, 3363, 3806 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 1831, 1863, 1904, 1936, 3354, 3386 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2295 |
| AspLEI | GCGC | 2 cut(s) | 575, 1443 |
| AspS9I | GGNCC | 4 cut(s) | 263, 1621, 2941, 3248 |
| AvaII | GGWCC | 1 cut(s) | 263 |
| BalI | TGGCCA | 1 cut(s) | 3947 |
| BanI | GGYRCC | 1 cut(s) | 1976 |
| BauI | CACGAG | 1 cut(s) | 1014 |
| BbsI | GAAGAC | 6 cut(s) | 521, 839, 1811, 1848, 2558, 3755 |
| Bbv12I | GWGCWC | 3 cut(s) | 1015, 1572, 3549 |
| BbvI | GCAGC | 6 cut(s) | 64, 2086, 2089, 2092, 2523, 3869 |
| BceAI | ACGGC | 1 cut(s) | 3773 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1433, 1467 |
| BciT130I | CCWGG | 5 cut(s) | 261, 1955, 2530, 2556, 3714 |
| BciVI | GTATCC | 1 cut(s) | 817 |
| BclI | TGATCA | 4 cut(s) | 1387, 1636, 2250, 3039 |
| BcuI | ACTAGT | 1 cut(s) | 836 |
| BfmI | CTRYAG | 3 cut(s) | 1560, 2271, 3700 |
| BfoI | RGCGCY | 1 cut(s) | 576 |
| BfuAI | ACCTGC | 2 cut(s) | 1998, 2428 |
| BfuI | GTATCC | 1 cut(s) | 817 |
| BglII | AGATCT | 1 cut(s) | 32 |
| BisI | GCNGC | 8 cut(s) | 53, 2081, 2100, 2103, 2534, 2537, 3085, 3858 |
| BlpI | GCTNAGC | 1 cut(s) | 3024 |
| BlsI | GCNGC | 8 cut(s) | 54, 2082, 2101, 2104, 2535, 2538, 3086, 3859 |
| Bme1390I | CCNGG | 5 cut(s) | 261, 1955, 2530, 2556, 3714 |
| Bme18I | GGWCC | 1 cut(s) | 263 |
| BmgBI | CACGTC | 2 cut(s) | 2639, 3034 |
| BmgT120I | GGNCC | 4 cut(s) | 263, 1621, 2941, 3248 |
| BmiI | GGNNCC | 4 cut(s) | 6, 924, 1420, 1978 |
| BmrFI | CCNGG | 5 cut(s) | 261, 1955, 2530, 2556, 3714 |
| BmrI | ACTGGG | 3 cut(s) | 1628, 2623, 3083 |
| BmuI | ACTGGG | 3 cut(s) | 1628, 2623, 3083 |
| BpiI | GAAGAC | 6 cut(s) | 521, 839, 1811, 1848, 2558, 3755 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 2815, 2847, 3923, 3955 |
| BpmI | CTGGAG | 3 cut(s) | 1161, 1415, 3764 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1251, 1704 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 3024 |
| BpuEI | CTTGAG | 2 cut(s) | 2138, 3563 |
| Bsa29I | ATCGAT | 1 cut(s) | 559 |
| BsaAI | YACGTR | 3 cut(s) | 2363, 2465, 3775 |
| BsaHI | GRCGYC | 1 cut(s) | 1072 |
| BsaI | GGTCTC | 1 cut(s) | 3637 |
| BsaJI | CCNNGG | 4 cut(s) | 259, 1097, 1422, 3942 |
| BsaWI | WCCGGW | 5 cut(s) | 1303, 1504, 2316, 3372, 3960 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 262, 292, 1095, 1125, 3309, 3339, 3729, 3759 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 75, 260, 1039, 1295, 1630, 2654, 3256, 3257 |
| Bse118I | RCCGGY | 1 cut(s) | 1681 |
| Bse3DI | GCAATG | 2 cut(s) | 3525, 3867 |
| BseAI | TCCGGA | 4 cut(s) | 1303, 1504, 2316, 3372 |
| BseBI | CCWGG | 5 cut(s) | 261, 1955, 2530, 2556, 3714 |
| BseCI | ATCGAT | 1 cut(s) | 559 |
| BseDI | CCNNGG | 4 cut(s) | 259, 1097, 1422, 3942 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 75, 260, 1039, 1295, 1630, 2654, 3256, 3257 |
| BseMI | GCAATG | 2 cut(s) | 3525, 3867 |
| BseMII | CTCAG | 7 cut(s) | 510, 1014, 1662, 3015, 3210, 3323, 3921 |
| BseRI | GAGGAG | 3 cut(s) | 327, 1554, 3230 |
| BseXI | GCAGC | 6 cut(s) | 64, 2086, 2089, 2092, 2523, 3869 |
| BseYI | CCCAGC | 1 cut(s) | 3328 |
| BsgI | GTGCAG | 2 cut(s) | 1473, 3584 |
| Bsh1236I | CGCG | 1 cut(s) | 1443 |
| BshFI | GGCC | 8 cut(s) | 400, 1146, 1526, 1623, 1681, 2942, 3249, 3947 |
| BshNI | GGYRCC | 1 cut(s) | 1976 |
| BshVI | ATCGAT | 1 cut(s) | 559 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1015, 1572, 3549 |
| BsiSI | CCGG | 6 cut(s) | 1304, 1505, 1682, 2317, 3373, 3961 |
| BslFI | GGGAC | 1 cut(s) | 3311 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 75, 260, 1039, 1295, 1630, 2654, 3256, 3257 |
| BsmBI | CGTCTC | 5 cut(s) | 15, 111, 183, 1063, 3605 |
| BsmFI | GGGAC | 1 cut(s) | 3311 |
| BsmI | GAATGC | 1 cut(s) | 2000 |
| BsnI | GGCC | 8 cut(s) | 400, 1146, 1526, 1623, 1681, 2942, 3249, 3947 |
| Bso31I | GGTCTC | 1 cut(s) | 3637 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1015, 1572, 3549 |
| Bsp13I | TCCGGA | 4 cut(s) | 1303, 1504, 2316, 3372 |
| Bsp1407I | TGTACA | 1 cut(s) | 283 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 3024 |
| Bsp19I | CCATGG | 1 cut(s) | 3942 |
| BspACI | CCGC | 9 cut(s) | 27, 194, 829, 1033, 2284, 2533, 3085, 3440, 3530 |
| BspANI | GGCC | 8 cut(s) | 400, 1146, 1526, 1623, 1681, 2942, 3249, 3947 |
| BspCNI | CTCAG | 7 cut(s) | 511, 1015, 1663, 3016, 3211, 3322, 3920 |
| BspDI | ATCGAT | 1 cut(s) | 559 |
| BspEI | TCCGGA | 4 cut(s) | 1303, 1504, 2316, 3372 |
| BspFNI | CGCG | 1 cut(s) | 1443 |
| BspHI | TCATGA | 1 cut(s) | 2833 |
| BspLI | GGNNCC | 4 cut(s) | 6, 924, 1420, 1978 |
| BspMI | ACCTGC | 2 cut(s) | 1998, 2428 |
| BspPI | GGATC | 1 cut(s) | 1088 |
| BspQI | GCTCTTC | 2 cut(s) | 2500, 2942 |
| BspT107I | GGYRCC | 1 cut(s) | 1976 |
| BspTNI | GGTCTC | 1 cut(s) | 3637 |
| BsrDI | GCAATG | 2 cut(s) | 3525, 3867 |
| BsrFI | RCCGGY | 1 cut(s) | 1681 |
| BsrGI | TGTACA | 1 cut(s) | 283 |
| BssAI | RCCGGY | 1 cut(s) | 1681 |
| BssECI | CCNNGG | 4 cut(s) | 259, 1097, 1422, 3942 |
| BssNI | GRCGYC | 1 cut(s) | 1072 |
| BssSI | CACGAG | 1 cut(s) | 1014 |
| BssT1I | CCWWGG | 2 cut(s) | 1422, 3942 |
| Bst2BI | CACGAG | 1 cut(s) | 1014 |
| Bst2UI | CCWGG | 5 cut(s) | 261, 1955, 2530, 2556, 3714 |
| Bst6I | CTCTTC | 6 cut(s) | 483, 753, 765, 2500, 2661, 2942 |
| BstACI | GRCGYC | 1 cut(s) | 1072 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1964 |
| BstAUI | TGTACA | 1 cut(s) | 283 |
| BstBAI | YACGTR | 3 cut(s) | 2363, 2465, 3775 |
| BstC8I | GCNNGC | 8 cut(s) | 927, 1472, 1664, 2223, 2491, 2683, 2984, 3522 |
| BstDSI | CCRYGG | 1 cut(s) | 3942 |
| BstFNI | CGCG | 1 cut(s) | 1443 |
| BstH2I | RGCGCY | 1 cut(s) | 576 |
| BstHHI | GCGC | 2 cut(s) | 575, 1443 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 1964, 3224, 3288, 3478, 3487, 3755 |
| BstNI | CCWGG | 5 cut(s) | 261, 1955, 2530, 2556, 3714 |
| BstNSI | RCATGY | 5 cut(s) | 464, 1244, 2493, 3654, 3723 |
| BstSCI | CCNGG | 5 cut(s) | 259, 1953, 2528, 2554, 3712 |
| BstSFI | CTRYAG | 3 cut(s) | 1560, 2271, 3700 |
| BstSNI | TACGTA | 1 cut(s) | 3775 |
| BstUI | CGCG | 1 cut(s) | 1443 |
| BstV1I | GCAGC | 6 cut(s) | 64, 2086, 2089, 2092, 2523, 3869 |
| BstV2I | GAAGAC | 6 cut(s) | 521, 839, 1811, 1848, 2558, 3755 |
| BstX2I | RGATCY | 1 cut(s) | 32 |
| BstYI | RGATCY | 1 cut(s) | 32 |
| Bsu15I | ATCGAT | 1 cut(s) | 559 |
| BsuI | GTATCC | 1 cut(s) | 817 |
| BsuRI | GGCC | 8 cut(s) | 400, 1146, 1526, 1623, 1681, 2942, 3249, 3947 |
| BsuTUI | ATCGAT | 1 cut(s) | 559 |
| BtgI | CCRYGG | 1 cut(s) | 3942 |
| BtgZI | GCGATG | 1 cut(s) | 681 |
| BtrI | CACGTC | 2 cut(s) | 2639, 3034 |
| BtsI | GCAGTG | 4 cut(s) | 1654, 2187, 3572, 3889 |
| BtsIMutI | CAGTG | 6 cut(s) | 1654, 2187, 2306, 3135, 3572, 3889 |
| BveI | ACCTGC | 2 cut(s) | 1998, 2428 |
| Cac8I | GCNNGC | 8 cut(s) | 927, 1472, 1664, 2223, 2491, 2683, 2984, 3522 |
| CaiI | CAGNNNCTG | 2 cut(s) | 3437, 3899 |
| CciI | TCATGA | 1 cut(s) | 2833 |
| CfoI | GCGC | 2 cut(s) | 575, 1443 |
| Cfr10I | RCCGGY | 1 cut(s) | 1681 |
| Cfr13I | GGNCC | 4 cut(s) | 263, 1621, 2941, 3248 |
| ClaI | ATCGAT | 1 cut(s) | 559 |
| CseI | GACGC | 2 cut(s) | 44, 1080 |
| Csp6I | GTAC | 7 cut(s) | 284, 2302, 2441, 3191, 3539, 3776, 3820 |
| CviQI | GTAC | 7 cut(s) | 284, 2302, 2441, 3191, 3539, 3776, 3820 |
| DraI | TTTAAA | 1 cut(s) | 1168 |
| EaeI | YGGCCR | 1 cut(s) | 3945 |
| Eam1104I | CTCTTC | 6 cut(s) | 483, 753, 765, 2500, 2661, 2942 |
| EarI | CTCTTC | 6 cut(s) | 483, 753, 765, 2500, 2661, 2942 |
| EciI | GGCGGA | 1 cut(s) | 183 |
| Eco105I | TACGTA | 1 cut(s) | 3775 |
| Eco130I | CCWWGG | 2 cut(s) | 1422, 3942 |
| Eco31I | GGTCTC | 1 cut(s) | 3637 |
| Eco47I | GGWCC | 1 cut(s) | 263 |
| Eco57I | CTGAAG | 3 cut(s) | 1554, 1956, 2966 |
| EcoO109I | RGGNCCY | 1 cut(s) | 3248 |
| EcoRI | GAATTC | 3 cut(s) | 2312, 2447, 3806 |
| EcoRII | CCWGG | 5 cut(s) | 259, 1953, 2528, 2554, 3712 |
| EcoT14I | CCWWGG | 2 cut(s) | 1422, 3942 |
| EcoT22I | ATGCAT | 2 cut(s) | 1513, 2758 |
| ErhI | CCWWGG | 2 cut(s) | 1422, 3942 |
| Esp3I | CGTCTC | 5 cut(s) | 15, 111, 183, 1063, 3605 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 3049, 3081 |
| FaqI | GGGAC | 1 cut(s) | 3311 |
| FauI | CCCGC | 1 cut(s) | 2277 |
| FauNDI | CATATG | 2 cut(s) | 1179, 3645 |
| FbaI | TGATCA | 4 cut(s) | 1387, 1636, 2250, 3039 |
| FblI | GTMKAC | 1 cut(s) | 1047 |
| Fnu4HI | GCNGC | 8 cut(s) | 53, 2081, 2100, 2103, 2534, 2537, 3085, 3858 |
| Fsp4HI | GCNGC | 8 cut(s) | 53, 2081, 2100, 2103, 2534, 2537, 3085, 3858 |
| GlaI | GCGC | 2 cut(s) | 574, 1442 |
| GluI | GCNGC | 8 cut(s) | 53, 2081, 2100, 2103, 2534, 2537, 3085, 3858 |
| GsaI | CCCAGC | 1 cut(s) | 3332 |
| GsuI | CTGGAG | 3 cut(s) | 1161, 1415, 3764 |
| HaeII | RGCGCY | 1 cut(s) | 576 |
| HaeIII | GGCC | 8 cut(s) | 400, 1146, 1526, 1623, 1681, 2942, 3249, 3947 |
| HapII | CCGG | 6 cut(s) | 1304, 1505, 1682, 2317, 3373, 3961 |
| HgaI | GACGC | 2 cut(s) | 44, 1080 |
| HhaI | GCGC | 2 cut(s) | 575, 1443 |
| Hin1I | GRCGYC | 1 cut(s) | 1072 |
| Hin6I | GCGC | 2 cut(s) | 573, 1441 |
| HinP1I | GCGC | 2 cut(s) | 573, 1441 |
| HincII | GTYRAC | 5 cut(s) | 1850, 3358, 3450, 3742, 3966 |
| HindII | GTYRAC | 5 cut(s) | 1850, 3358, 3450, 3742, 3966 |
| HindIII | AAGCTT | 1 cut(s) | 1900 |
| HpaI | GTTAAC | 2 cut(s) | 3742, 3966 |
| HpaII | CCGG | 6 cut(s) | 1304, 1505, 1682, 2317, 3373, 3961 |
| Hpy166II | GTNNAC | 8 cut(s) | 46, 1048, 1324, 1850, 3358, 3450, 3742, 3966 |
| Hpy8I | GTNNAC | 8 cut(s) | 46, 1048, 1324, 1850, 3358, 3450, 3742, 3966 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 1964, 3224, 3288, 3478, 3487, 3755 |
| Hsp92I | GRCGYC | 1 cut(s) | 1072 |
| HspAI | GCGC | 2 cut(s) | 573, 1441 |
| Kpn2I | TCCGGA | 4 cut(s) | 1303, 1504, 2316, 3372 |
| Ksp22I | TGATCA | 4 cut(s) | 1387, 1636, 2250, 3039 |
| KspAI | GTTAAC | 2 cut(s) | 3742, 3966 |
| LguI | GCTCTTC | 2 cut(s) | 2500, 2942 |
| LmnI | GCTCC | 7 cut(s) | 10, 426, 922, 1247, 1396, 2657, 3317 |
| Lsp1109I | GCAGC | 6 cut(s) | 64, 2086, 2089, 2092, 2523, 3869 |
| MfeI | CAATTG | 2 cut(s) | 1843, 3005 |
| MflI | RGATCY | 1 cut(s) | 32 |
| MhlI | GDGCHC | 3 cut(s) | 1015, 1572, 3549 |
| MlsI | TGGCCA | 1 cut(s) | 3947 |
| MluNI | TGGCCA | 1 cut(s) | 3947 |
| MlyI | GAGTC | 8 cut(s) | 500, 812, 2023, 2714, 2875, 2945, 3703, 3914 |
| MmeI | TCCRAC | 4 cut(s) | 963, 1225, 1801, 2758 |
| Mox20I | TGGCCA | 1 cut(s) | 3947 |
| Mph1103I | ATGCAT | 2 cut(s) | 1513, 2758 |
| MroI | TCCGGA | 4 cut(s) | 1303, 1504, 2316, 3372 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2295 |
| MscI | TGGCCA | 1 cut(s) | 3947 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2838 |
| Msp20I | TGGCCA | 1 cut(s) | 3947 |
| MspA1I | CMGCKG | 3 cut(s) | 27, 1393, 3023 |
| MspI | CCGG | 6 cut(s) | 1304, 1505, 1682, 2317, 3373, 3961 |
| MspR9I | CCNGG | 5 cut(s) | 261, 1955, 2530, 2556, 3714 |
| MunI | CAATTG | 2 cut(s) | 1843, 3005 |
| Mva1269I | GAATGC | 1 cut(s) | 2000 |
| MvaI | CCWGG | 5 cut(s) | 261, 1955, 2530, 2556, 3714 |
| MvnI | CGCG | 1 cut(s) | 1443 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 1964, 3224, 3288, 3478, 3487, 3755 |
| NcoI | CCATGG | 1 cut(s) | 3942 |
| NdeI | CATATG | 2 cut(s) | 1179, 3645 |
| NlaIV | GGNNCC | 4 cut(s) | 6, 924, 1420, 1978 |
| NmuCI | GTSAC | 5 cut(s) | 183, 362, 430, 595, 647 |
| NsiI | ATGCAT | 2 cut(s) | 1513, 2758 |
| NspI | RCATGY | 5 cut(s) | 464, 1244, 2493, 3654, 3723 |
| PaeI | GCATGC | 1 cut(s) | 2493 |
| PagI | TCATGA | 1 cut(s) | 2833 |
| PciI | ACATGT | 1 cut(s) | 1240 |
| PciSI | GCTCTTC | 2 cut(s) | 2500, 2942 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 565 |
| PctI | GAATGC | 1 cut(s) | 2000 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2295 |
| PkrI | GCNGC | 8 cut(s) | 54, 2082, 2101, 2104, 2535, 2538, 3086, 3859 |
| PleI | GAGTC | 8 cut(s) | 499, 812, 2022, 2713, 2875, 2944, 3703, 3914 |
| PpsI | GAGTC | 8 cut(s) | 499, 812, 2022, 2713, 2875, 2944, 3703, 3914 |
| Ppu21I | YACGTR | 3 cut(s) | 2363, 2465, 3775 |
| PscI | ACATGT | 1 cut(s) | 1240 |
| Psp1406I | AACGTT | 2 cut(s) | 2067, 3744 |
| Psp6I | CCWGG | 5 cut(s) | 259, 1953, 2528, 2554, 3712 |
| PspFI | CCCAGC | 1 cut(s) | 3328 |
| PspGI | CCWGG | 5 cut(s) | 259, 1953, 2528, 2554, 3712 |
| PspN4I | GGNNCC | 4 cut(s) | 6, 924, 1420, 1978 |
| PspPI | GGNCC | 4 cut(s) | 263, 1621, 2941, 3248 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1248, 1280 |
| PstNI | CAGNNNCTG | 2 cut(s) | 3437, 3899 |
| PsuI | RGATCY | 1 cut(s) | 32 |
| PvuII | CAGCTG | 2 cut(s) | 1393, 3023 |
| RsaI | GTAC | 7 cut(s) | 285, 2303, 2442, 3192, 3540, 3777, 3821 |
| RsaNI | GTAC | 7 cut(s) | 284, 2302, 2441, 3191, 3539, 3776, 3820 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2838 |
| SapI | GCTCTTC | 2 cut(s) | 2500, 2942 |
| SatI | GCNGC | 8 cut(s) | 53, 2081, 2100, 2103, 2534, 2537, 3085, 3858 |
| Sau96I | GGNCC | 4 cut(s) | 263, 1621, 2941, 3248 |
| SchI | GAGTC | 8 cut(s) | 500, 812, 2023, 2714, 2875, 2945, 3703, 3914 |
| ScrFI | CCNGG | 5 cut(s) | 261, 1955, 2530, 2556, 3714 |
| SduI | GDGCHC | 3 cut(s) | 1015, 1572, 3549 |
| SfcI | CTRYAG | 3 cut(s) | 1560, 2271, 3700 |
| SinI | GGWCC | 1 cut(s) | 263 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2838 |
| SmlI | CTYRAG | 2 cut(s) | 2117, 3542 |
| SmoI | CTYRAG | 2 cut(s) | 2117, 3542 |
| SnaBI | TACGTA | 1 cut(s) | 3775 |
| SpeI | ACTAGT | 1 cut(s) | 836 |
| SphI | GCATGC | 1 cut(s) | 2493 |
| SsiI | CCGC | 9 cut(s) | 27, 194, 829, 1033, 2284, 2533, 3085, 3440, 3530 |
| StyD4I | CCNGG | 5 cut(s) | 259, 1953, 2528, 2554, 3712 |
| StyI | CCWWGG | 2 cut(s) | 1422, 3942 |
| TaqI | TCGA | 5 cut(s) | 559, 1368, 2855, 2872, 3810 |
| TaqII | GACCGA | 1 cut(s) | 1065 |
| TatI | WGTACW | 1 cut(s) | 283 |
| TauI | GCSGC | 2 cut(s) | 2536, 3087 |
| TscAI | CASTG | 6 cut(s) | 1654, 2194, 2313, 3142, 3572, 3889 |
| TseFI | GTSAC | 5 cut(s) | 183, 362, 430, 595, 647 |
| TseI | GCWGC | 6 cut(s) | 52, 2080, 2099, 2102, 2536, 3857 |
| Tsp45I | GTSAC | 5 cut(s) | 183, 362, 430, 595, 647 |
| TspRI | CASTG | 6 cut(s) | 1654, 2194, 2313, 3142, 3572, 3889 |
| VpaK11BI | GGWCC | 1 cut(s) | 263 |
| XapI | RAATTY | 9 cut(s) | 1028, 1211, 1312, 1787, 2312, 2447, 2699, 3363, 3806 |
| XbaI | TCTAGA | 1 cut(s) | 821 |
| XceI | RCATGY | 5 cut(s) | 464, 1244, 2493, 3654, 3723 |
| XmiI | GTMKAC | 1 cut(s) | 1047 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2295 |
| Zsp2I | ATGCAT | 2 cut(s) | 1513, 2758 |