Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022843.1

Orthogroup ID

OG0010841

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 567

Gene Structure 567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022843.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

cctaaatctaaacctaaacccagcccgggttccagccctagctccaccacgccttcgcctctccaatccaagcctaagcccaatcccgatcccgatcccaatccgaagaaatcgttgtacggccaagaggtggtcggcaagaggatcaaggtgtactgggcgagtgatagggcctggtacgaaggctgtgtcaagttgttcaataaggagagtggtaagcacttacttcagtacgacgatggcgacgaagagactttggatttggccaccgagaaaatcgagtggattcaagagaccgtccagacctttaagcgcttgcgccgcggtcctttgcccactcccgaggcggaggaggaggaggaggtcaaggaagacagtgatgatgatgatgatgatgattccggcgatgaggattggggaaagggtgtggaaaaggaactagttgaggaggaagacgaggttatggaattggaggatgaggaagaagatgatgatgatgatgagggactccagcccaagcccaaagcaaggcgcggcggctccggtggtaaacggaagttgagcggc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000217 GO:0000404 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006259 GO:0006281 GO:0006290 GO:0006298 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030983 GO:0032135 GO:0032300 GO:0032991 GO:0033554 GO:0034641 GO:0042623 GO:0043170 GO:0043570 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko01524 ko03430 ko05200 ko05210 map01524 map03430 map05200 map05210

Pfam Domains

Protein Families

MutS_I MutS_II MutS_III MutS_IV MutS_V

Protein Analysis

189

Amino Acids

21.24

Weight (kDa)

4.41

Isoelectric Point (pI)

63.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010841)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02070 AT4G02070
fragaria_vesca	FvH4_5g39410 FvH4_5g39410 FvH4_5g39410 FvH4_5g39410
malus_domestica	MD01G1013000.v1.1 MD03G1296000.v1.1 MD11G1315400.v1.1
prunus_persica	Prupe.8G271300_v2.0.a1 Prupe.8G271300_v2.0.a1 Prupe.8G271300_v2.0.a1 Prupe.8G271300_v2.0.a1
pyrus_communis	pycom03g23420 pycom11g27540
rosa_laevigata	RLG00000000552
rosa_multiflora	Rmu_sc0022843.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218800
rosa_samantha	Rh7CG517400 Rh7DG485900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	130
AccBSI	CCGCTC	1 cut(s)	564
AccII	CGCG	2 cut(s)	324, 534
AciI	CCGC	6 cut(s)	322, 324, 347, 534, 537, 564
AclWI	GGATC	3 cut(s)	83, 89, 152
AcoI	YGGCCR	2 cut(s)	121, 264
AcuI	CTGAAG	1 cut(s)	212
AfaI	GTAC	4 cut(s)	119, 155, 179, 233
AfeI	AGCGCT	1 cut(s)	314
AfiI	CCNNNNNNNGG	3 cut(s)	26, 130, 528
AgsI	TTSAA	2 cut(s)	202, 290
AhlI	ACTAGT	1 cut(s)	439
AjnI	CCWGG	1 cut(s)	173
AluBI	AGCT	1 cut(s)	42
AluI	AGCT	1 cut(s)	42
Alw26I	GTCTC	2 cut(s)	245, 287
AlwI	GGATC	3 cut(s)	83, 89, 152
Ama87I	CYCGRG	2 cut(s)	25, 341
Aor51HI	AGCGCT	1 cut(s)	314
AoxI	GGCC	3 cut(s)	121, 171, 264
ArsI	GACNNNNNNTTYG	4 cut(s)	174, 206, 244, 276
AspLEI	GCGC	3 cut(s)	315, 321, 534
AspS9I	GGNCC	2 cut(s)	171, 326
AsuC2I	CCSGG	2 cut(s)	26, 27
AvaI	CYCGRG	2 cut(s)	25, 341
AvaII	GGWCC	1 cut(s)	326
BalI	TGGCCA	1 cut(s)	266
BbsI	GAAGAC	2 cut(s)	378, 459
BccI	CCATC	1 cut(s)	233
BceAI	ACGGC	1 cut(s)	136
BciT130I	CCWGG	1 cut(s)	175
BcnI	CCSGG	2 cut(s)	26, 27
BcoDI	GTCTC	2 cut(s)	245, 287
BcuI	ACTAGT	1 cut(s)	439
BfaI	CTAG	2 cut(s)	39, 440
BfoI	RGCGCY	1 cut(s)	316
BisI	GCNGC	4 cut(s)	322, 535, 538, 565
BlsI	GCNGC	4 cut(s)	323, 536, 539, 566
Bme1390I	CCNGG	3 cut(s)	26, 27, 175
Bme18I	GGWCC	1 cut(s)	326
BmeT110I	CYCGRG	2 cut(s)	25, 341
BmgT120I	GGNCC	2 cut(s)	171, 326
BmiI	GGNNCC	2 cut(s)	31, 541
BmrFI	CCNGG	3 cut(s)	26, 27, 175
BmrI	ACTGGG	1 cut(s)	166
BmuI	ACTGGG	1 cut(s)	166
BpiI	GAAGAC	2 cut(s)	378, 459
BpmI	CTGGAG	1 cut(s)	494
Bpu10I	CCTNAGC	1 cut(s)	75
BpuMI	CCSGG	2 cut(s)	26, 27
BsaBI	GATNNNNATC	2 cut(s)	93, 99
BsaI	GGTCTC	1 cut(s)	287
BsaJI	CCNNGG	3 cut(s)	25, 322, 342
BsaWI	WCCGGW	1 cut(s)	542
Bsc4I	CCNNNNNNNGG	3 cut(s)	26, 130, 528
Bse1I	ACTGG	1 cut(s)	161
Bse8I	GATNNNNATC	2 cut(s)	93, 99
BseBI	CCWGG	1 cut(s)	175
BseDI	CCNNGG	3 cut(s)	25, 322, 342
BseGI	GGATG	1 cut(s)	481
BseJI	GATNNNNATC	2 cut(s)	93, 99
BseLI	CCNNNNNNNGG	3 cut(s)	26, 130, 528
BseNI	ACTGG	1 cut(s)	161
BseRI	GAGGAG	5 cut(s)	365, 368, 371, 374, 461
BseYI	CCCAGC	1 cut(s)	20
Bsh1236I	CGCG	2 cut(s)	324, 534
BshFI	GGCC	3 cut(s)	123, 173, 266
BsiHKCI	CYCGRG	2 cut(s)	25, 341
BsiSI	CCGG	3 cut(s)	26, 402, 543
BslFI	GGGAC	1 cut(s)	519
BslI	CCNNNNNNNGG	3 cut(s)	26, 130, 528
BsmAI	GTCTC	2 cut(s)	245, 287
BsmFI	GGGAC	1 cut(s)	519
BsnI	GGCC	3 cut(s)	123, 173, 266
Bso31I	GGTCTC	1 cut(s)	287
BsoBI	CYCGRG	2 cut(s)	25, 341
Bsp143I	GATC	3 cut(s)	88, 94, 144
BspACI	CCGC	6 cut(s)	322, 324, 347, 534, 537, 564
BspANI	GGCC	3 cut(s)	123, 173, 266
BspFNI	CGCG	2 cut(s)	324, 534
BspLI	GGNNCC	2 cut(s)	31, 541
BspPI	GGATC	3 cut(s)	83, 89, 152
BspTNI	GGTCTC	1 cut(s)	287
BsrBI	CCGCTC	1 cut(s)	564
BsrI	ACTGG	1 cut(s)	161
BssECI	CCNNGG	3 cut(s)	25, 322, 342
BssMI	GATC	3 cut(s)	88, 94, 144
Bst2UI	CCWGG	1 cut(s)	175
Bst4CI	ACNGT	2 cut(s)	298, 377
Bst6I	CTCTTC	1 cut(s)	243
BstC8I	GCNNGC	1 cut(s)	317
BstDEI	CTNAG	1 cut(s)	75
BstDSI	CCRYGG	1 cut(s)	322
BstF5I	GGATG	1 cut(s)	481
BstFNI	CGCG	2 cut(s)	324, 534
BstH2I	RGCGCY	1 cut(s)	316
BstHHI	GCGC	3 cut(s)	315, 321, 534
BstKTI	GATC	3 cut(s)	91, 97, 147
BstMAI	GTCTC	2 cut(s)	245, 287
BstMBI	GATC	3 cut(s)	88, 94, 144
BstMWI	GCNNNNNNNGC	1 cut(s)	321
BstNI	CCWGG	1 cut(s)	175
BstSCI	CCNGG	3 cut(s)	24, 25, 173
BstUI	CGCG	2 cut(s)	324, 534
BstV2I	GAAGAC	2 cut(s)	378, 459
BsuRI	GGCC	3 cut(s)	123, 173, 266
BtgI	CCRYGG	1 cut(s)	322
BtgZI	GCGATG	1 cut(s)	420
BtsCI	GGATG	1 cut(s)	481
BtsIMutI	CAGTG	1 cut(s)	382
Cac8I	GCNNGC	1 cut(s)	317
CfoI	GCGC	3 cut(s)	315, 321, 534
Cfr13I	GGNCC	2 cut(s)	171, 326
Cfr42I	CCGCGG	1 cut(s)	325
Cfr9I	CCCGGG	1 cut(s)	25
Csp6I	GTAC	4 cut(s)	118, 154, 178, 232
CviQI	GTAC	4 cut(s)	118, 154, 178, 232
DdeI	CTNAG	1 cut(s)	75
DpnI	GATC	3 cut(s)	90, 96, 146
DpnII	GATC	3 cut(s)	88, 94, 144
EaeI	YGGCCR	2 cut(s)	121, 264
Eam1104I	CTCTTC	1 cut(s)	243
EarI	CTCTTC	1 cut(s)	243
EciI	GGCGGA	1 cut(s)	362
Eco31I	GGTCTC	1 cut(s)	287
Eco47I	GGWCC	1 cut(s)	326
Eco47III	AGCGCT	1 cut(s)	314
Eco57I	CTGAAG	1 cut(s)	212
Eco88I	CYCGRG	2 cut(s)	25, 341
EcoO109I	RGGNCCY	1 cut(s)	171
EcoRII	CCWGG	1 cut(s)	173
FaiI	YATR	1 cut(s)	464
FaqI	GGGAC	1 cut(s)	519
Fnu4HI	GCNGC	4 cut(s)	322, 535, 538, 565
FokI	GGATG	1 cut(s)	488
Fsp4HI	GCNGC	4 cut(s)	322, 535, 538, 565
FspBI	CTAG	2 cut(s)	39, 440
GlaI	GCGC	3 cut(s)	314, 320, 533
GluI	GCNGC	4 cut(s)	322, 535, 538, 565
GsaI	CCCAGC	1 cut(s)	24
GsuI	CTGGAG	1 cut(s)	494
HaeII	RGCGCY	1 cut(s)	316
HaeIII	GGCC	3 cut(s)	123, 173, 266
HapII	CCGG	3 cut(s)	26, 402, 543
HhaI	GCGC	3 cut(s)	315, 321, 534
Hin6I	GCGC	3 cut(s)	313, 319, 532
HinP1I	GCGC	3 cut(s)	313, 319, 532
HinfI	GANTC	3 cut(s)	286, 398, 507
HpaII	CCGG	3 cut(s)	26, 402, 543
Hpy166II	GTNNAC	2 cut(s)	154, 551
Hpy188I	TCNGA	1 cut(s)	105
Hpy188III	TCNNGA	5 cut(s)	86, 92, 290, 301, 341
Hpy8I	GTNNAC	2 cut(s)	154, 551
Hpy99I	CGWCG	2 cut(s)	239, 248
HpyAV	CCTTC	2 cut(s)	63, 176
HpyCH4III	ACNGT	2 cut(s)	298, 377
HpyF10VI	GCNNNNNNNGC	1 cut(s)	321
HpyF3I	CTNAG	1 cut(s)	75
HspAI	GCGC	3 cut(s)	313, 319, 532
KspI	CCGCGG	1 cut(s)	325
Kzo9I	GATC	3 cut(s)	88, 94, 144
LmnI	GCTCC	2 cut(s)	47, 545
MaeI	CTAG	2 cut(s)	39, 440
MalI	GATC	3 cut(s)	90, 96, 146
MbiI	CCGCTC	1 cut(s)	564
MboI	GATC	3 cut(s)	88, 94, 144
MboII	GAAGA	6 cut(s)	118, 260, 383, 464, 494, 497
MlsI	TGGCCA	1 cut(s)	266
MluCI	AATT	1 cut(s)	467
MluNI	TGGCCA	1 cut(s)	266
MlyI	GAGTC	1 cut(s)	501
Mox20I	TGGCCA	1 cut(s)	266
MscI	TGGCCA	1 cut(s)	266
MseI	TTAA	1 cut(s)	309
Msp20I	TGGCCA	1 cut(s)	266
MspA1I	CMGCKG	1 cut(s)	324
MspI	CCGG	3 cut(s)	26, 402, 543
MspR9I	CCNGG	3 cut(s)	26, 27, 175
MvaI	CCWGG	1 cut(s)	175
MvnI	CGCG	2 cut(s)	324, 534
MwoI	GCNNNNNNNGC	1 cut(s)	321
NciI	CCSGG	2 cut(s)	26, 27
NdeII	GATC	3 cut(s)	88, 94, 144
NlaIV	GGNNCC	2 cut(s)	31, 541
PcsI	WCGNNNNNNNCGW	2 cut(s)	240, 243
PfeI	GAWTC	2 cut(s)	286, 398
PflMI	CCANNNNNTGG	1 cut(s)	130
PkrI	GCNGC	4 cut(s)	323, 536, 539, 566
PleI	GAGTC	1 cut(s)	501
PpsI	GAGTC	1 cut(s)	501
Psp6I	CCWGG	1 cut(s)	173
PspFI	CCCAGC	1 cut(s)	20
PspGI	CCWGG	1 cut(s)	173
PspN4I	GGNNCC	2 cut(s)	31, 541
PspPI	GGNCC	2 cut(s)	171, 326
RsaI	GTAC	4 cut(s)	119, 155, 179, 233
RsaNI	GTAC	4 cut(s)	118, 154, 178, 232
SacII	CCGCGG	1 cut(s)	325
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	4 cut(s)	322, 535, 538, 565
Sau3AI	GATC	3 cut(s)	88, 94, 144
Sau96I	GGNCC	2 cut(s)	171, 326
SchI	GAGTC	1 cut(s)	501
ScrFI	CCNGG	3 cut(s)	26, 27, 175
SetI	ASST	7 cut(s)	16, 44, 132, 153, 308, 366, 462
Sfr303I	CCGCGG	1 cut(s)	325
SgrBI	CCGCGG	1 cut(s)	325
SinI	GGWCC	1 cut(s)	326
SmaI	CCCGGG	1 cut(s)	27
SpeI	ACTAGT	1 cut(s)	439
Sse9I	AATT	1 cut(s)	467
SsiI	CCGC	6 cut(s)	322, 324, 347, 534, 537, 564
SspMI	CTAG	2 cut(s)	39, 440
StyD4I	CCNGG	3 cut(s)	24, 25, 173
TaaI	ACNGT	2 cut(s)	298, 377
TaqI	TCGA	1 cut(s)	279
TasI	AATT	1 cut(s)	467
TatI	WGTACW	1 cut(s)	153
TauI	GCSGC	4 cut(s)	324, 537, 540, 567
TfiI	GAWTC	2 cut(s)	286, 398
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TscAI	CASTG	1 cut(s)	382
TspMI	CCCGGG	1 cut(s)	25
TspRI	CASTG	1 cut(s)	382
Van91I	CCANNNNNTGG	1 cut(s)	130
VpaK11BI	GGWCC	1 cut(s)	326
XmaI	CCCGGG	1 cut(s)	25
XspI	CTAG	2 cut(s)	39, 440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.