Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0010841

Physical Location & Seq

Genomic Coordinates Forward (+)

1061957 .. 1070502

Gene Structure 8546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00218800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3807 bp

ATGTCACGTCGTCGAAGCAACGGCGCATCCCCATTGGTTAACCCACAGCGCCAAATCACTTCCTTCTTCGCCAAAGCCACTTCCTCTCCATCTCCAATCCCTAAATCTAAATCTAAACCCAGCCCGGGTTCCAGCCCTAGCTCCACCACGCCTTCGCCTCTCCAATCGAAGCCCCCCAAGCCCAATCCCAATCCCAATCCCAATCCGAAGAAATTGTTGTACGGCCAAGAGGTGGTCGGCAAGAGGATCAAGGTGTACTGGGCAAGTGATAGGGCCTGGTACGAAGGCTGTGTCAAGTTGTTCAATAAGGAGAGTGGTAAGCACTTAGTTCAGTACGACGATGGTGACGAAGAGACTTTGGATTTGGCCACCGAGAAAATCGAGTGGATTCAAGAGGCTGTCCGGACCTTGAAGCGCTTGCGCCGAGGTCCTTTGCCCACTCCCGAGGTGGAGGAGGACAAGGAGGACAGTAATGATGATGATGATGATGATTCCGGCGATGAGGATTGGGGAAAGAGTGTGGAAAAGGAAGTGGTTGAGGAGGAGGAGGAAGACGAGGTTATGGAATTGGAGGATGAGGAAGATGATGATGATGAGGGACTCCAGCCCAAGTCCAAAGGAAGGCGCGGCGGCTCCGGTGGTAAACGGAAGTTGAGCGGTGGAGGGAATTTGGGGTCTGCTAAGAAGACCAAGACCGGTGGACATGTAGCCACTAATGGCCCCAAGCCTAATTTGATTCAGCCTACTACTACTAATGCTGCTGACAGCACAAAGGCGGTTAATGGTATCAATATTGGTGATGCCTCAGAAAGGTTTAGCAAGCGTGAAGCTGACAAGTTCCATTTCCTCGGGGAACAACCTGGGGATGCAAATTATGATCCAAGAACTCTATATCTACCTCCTGATTTCTTAAAGAATTTATCAGGTGGCCAGAGACAATGGTGGGAGTTTAAGTCAAAGCACATGGACAAAGTTCTATTTTTCAAGATGGGCAAGTTCTATGAACTTTTTGAAATGGATGCACATATAGGAGCAAAAGAACTTGATCTTCAATATATGAAGGGTGAACAACCCCATTGTGGATTTCCAGAGAAGAACTTTTCAATGAATGTGGAGAAATTGGCTAGGAAGGGTTACCGAGTTCTTGTCATAGAGCAGACAGAAACACCTGAACAGATGGAGCTTCGTCGCAAAGAGGGTGGCTCTAAAGATAAGGTTGTGAAACGTGAAGTATGTGCAGTAGTTACAAAGGGAACACTAACTGAGGGAGAGATGCTGTCCGCAAACCCTGATGCTTCTTATCTAATGGCAGTGACTGAAACCTCTCAAAATTTAGCAAACCAAAGTGGCGAGCGTATTTTTGGAGTTTGTGTGGTTGATGTTGCTACCAGTAGGGTTATTCTTGGACAGTTCGCAGATGATTTAGAGTGCAGTGCCTTGTCTTGTCTCTTGTCTGAATTGAGGCCCGTGGAACTAGTAAAACCAGCAGAACTACTTAGTCCTGAGACAGAAAAAGTACTGCTAAGACATACAAGAAGTCCACTAGTGAATGAATTGGTTCCACTTCTGGAATTCTGGGATGCTGAGAGAACTGTTTGTGAAGTTAAAAGTATCTATAGCCGTGCTGATGATTCTCATATGGAAGAAGATGGCTTGGGCTGCTTGCCAGATGTATTGTCTGAGCTTGTGGGAGCCGGGGAGAATGGCATCTGTGCACTTTCAGCTCTTGGGGGTGTTCTTTTCTACTTAAAGCAGGCTTTTCTGGAAGAGACATTGCTTAGATTTGCAAAATTTGAGTTGCTTCCAAGTTCTGGTTTTGGTGGTATCATATCAAAACCATACATGGTTCTCGATGCAGCTGCTCTAGAGAACCTGGAGATTTTTGAAAACAGCAGAAATGGAGACTCTTCAGGGACAATGTATGCGCATTTGAATCACTGTGTGACTGCATTTGGGAAGAGATTGCTTAAGACATGGCTTGCGAGACCTCTGTATCATGTAGAGTCAATTAAGGAACGCCAGGATGCTGTCTCAAGTTTACAGGTAAATGTCATAGACATCTTTTCTTTCAATTTTCTTTTCCCTGCCACTGAAATTTTCCAAGATCTTGCTGGTGCTCTAGCTTTCTTTCTTGTTCTTCAATGTATAATGTATAAAGGAATCAACCTTCCTCACGCACTTGAATTTCGAAAAGCAATGGCTAGGCTTCCGGACATGGAGCGCTTGCTTGCACGGGTCTTCGCTAGCAGTAAAGCTAGTGGACGGAATGCAAACAAAGTGGTTTTATATGAGGATGCCGCCAAAAAACAGCTCCAGGAGTTTATTACAGCTCTACGCGGTTGTGAATTAATGGCGGCAACAAGTTGCTCTCTTGGTGTCAACTTGGGAAATGTTGAATCTCGACAACTTCATCATTTGCTGACACCTGGTAAAGGTCTTCCTAATGTCAACTCAGTTTTAAAGCACTTCAAGGATGGCTTTGATTGGGTAGAAGCCAATAGTTCAGGTCGTATAATACCTCATGAAGGAGTTGATACTGAATACGACTCTGCATGTGGAAAAGTAAAAGAGATCGAGTCTCATTTAACTACGTACCTTGAAGAACAGAGGAAATTACTCGGAGATAAATCGATCACTTATGTCACAATTGGAAAAGACGCATACCTATTGGAAGTTCCAGAAAGTTTGAGAGAGAGTATACCTCAGGATTATGAATTACGTTCATCCAAAAAGGGTTTCTTTAGGTACCGGACACCAAATATTAAGAAGTCATTGACTGAGCTCTCACAAGCTGAATCTGATAGGGAGTCCTCACTTAAAAGCATTTTGCAGAGGTTAATTGGACAATTCTGCGAGCATCATATTAAGTGGAGACAGTTGGTCTCTGTGACTGCTGAACTGGATGTTTTAATCAGTCTAGCAATTGCAAGTGATTATTACGAGGGACCCACCTGTCGGCCTGTTATCATGAGAAAAGGTACATTTGTCCCCAATGACATTACTCTTGGAGGTTCTGGTCATGCAAGCTTTGTTCTTCTCACTGGCCCTAACATGGGTGGGAAGTCAACTCTGCTTCGCCAAGTTTGCTTGGCTGTGATTTTAGCCCAGTTAGGAGCAGATGTGCCTGCAGAGAGCTTTGAGCTGTCTCCTGTTGATCGAATCTTTGTTCGGATGGGTGCTAAAGATCATATCATGGTAGGCCAAAGTACATTTCTGACGGAGCTGTCAGAAACTGCAACAATGCTGTCGTCTGCTACTCGTAACTCATTGGTAGCACTGGATGAACTTGGACGTGGGACATCAACTTCAGACGGACAAGCCATTGCGGAATCAGTTCTTGAACATTTTGTCCACAAGGTTCACTGTCGAGGAATGTTTTCTACTCACTATCACAGGCTAGCTGTTGATTATCAGAATAATTCTCAGGTTTCACTCTGCCATATGGCATGCCATGTTGGAAATGGAGATGCTGGTGTAGAAGAAGTGACATTTCTTTACAGATTGACTCCCGGTGCTTGTCCTAAAAGCTATGGTGTCAACATTGCCCGGTTAGCTGGACTTCCTATTTCTGTGCTTCAAAAAGCTGCTGCTAAGTCCAGGGAATTCGAAGCTGCATATGGTAAACACTTAAAGCAATCTGAAGATAGCTTTCCCTTTCAAAGTCCAGTTAACAAGATGGTTGAGTGCATCCAAAAGTTTACCAACATCGTGGCAAAGTTGACTAGTCACGAGTCTACTGAGGGCATCGACATTGACTCCCTGACTGAAGTTTGGCATAAAGCAAGATTGCTTGAGCAACAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000217 GO:0000404 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006259 GO:0006281 GO:0006290 GO:0006298 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030983 GO:0032135 GO:0032300 GO:0032991 GO:0033554 GO:0034641 GO:0042623 GO:0043170 GO:0043570 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko01524 ko03430 ko05200 ko05210 map01524 map03430 map05200 map05210

Pfam Domains

Protein Families

MutS_I MutS_II MutS_III MutS_IV MutS_V

Protein Analysis

1268

Amino Acids

140.45

Weight (kDa)

5.72

Isoelectric Point (pI)

48.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MutS_I	PF01624	310 - 423	7.5e-33	MutS domain I
MutS_II	PF05188	433 - 584	1.3e-08	MutS domain II
MutS_III	PF05192	620 - 974	8.4e-31	MutS domain III
MutS_IV	PF05190	843 - 933	9.2e-16	MutS family domain IV
MutS_V	PF00488	1012 - 1202	2.5e-67	MutS domain V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0010841)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02070 AT4G02070
fragaria_vesca	FvH4_5g39410 FvH4_5g39410 FvH4_5g39410 FvH4_5g39410
malus_domestica	MD01G1013000.v1.1 MD03G1296000.v1.1 MD11G1315400.v1.1
prunus_persica	Prupe.8G271300_v2.0.a1 Prupe.8G271300_v2.0.a1 Prupe.8G271300_v2.0.a1 Prupe.8G271300_v2.0.a1
pyrus_communis	pycom03g23420 pycom11g27540
rosa_laevigata	RLG00000000552
rosa_multiflora	Rmu_sc0022843.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218800
rosa_samantha	Rh7CG517400 Rh7DG485900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	2952, 3223
Acc16I	TGCGCA	1 cut(s)	1926
Acc65I	GGTACC	1 cut(s)	2745
AccB1I	GGYRCC	1 cut(s)	2745
AccB7I	CCANNNNNTGG	2 cut(s)	232, 1811
AccBSI	CCGCTC	1 cut(s)	657
AccI	GTMKAC	2 cut(s)	2698, 3734
AccII	CGCG	2 cut(s)	627, 2337
AccIII	TCCGGA	2 cut(s)	402, 2209
AciI	CCGC	9 cut(s)	627, 630, 657, 776, 1281, 2298, 2337, 2354, 3326
AclWI	GGATC	2 cut(s)	254, 872
AcoI	YGGCCR	3 cut(s)	223, 366, 928
AcsI	RAATTY	8 cut(s)	667, 916, 1330, 1571, 1790, 2094, 2183, 3602
AcuI	CTGAAG	4 cut(s)	1893, 3291, 3660, 3786
AdeI	CACNNNGTG	1 cut(s)	1942
AfaI	GTAC	9 cut(s)	221, 257, 281, 335, 1518, 2594, 2747, 2980, 3208
AfeI	AGCGCT	2 cut(s)	416, 2222
AflII	CTTAAG	1 cut(s)	1967
AflIII	ACRYGT	1 cut(s)	703
AgeI	ACCGGT	1 cut(s)	695
AhdI	GACNNNNNGTC	1 cut(s)	2879
AhlI	ACTAGT	3 cut(s)	1474, 1543, 3722
AjiI	CACGTC	2 cut(s)	8, 3293
AjnI	CCWGG	7 cut(s)	275, 859, 1872, 2019, 2313, 2425, 3596
AjuI	GAANNNNNNNTTGG	4 cut(s)	2720, 2752, 3195, 3227
AloI	GAACNNNNNNTCC	2 cut(s)	3333, 3365
Alw21I	GWGCWC	3 cut(s)	1717, 2119, 2784
Alw44I	GTGCAC	1 cut(s)	1713
AlwI	GGATC	2 cut(s)	254, 872
AlwNI	CAGNNNCTG	2 cut(s)	1316, 3233
Ama87I	CYCGRG	3 cut(s)	124, 443, 848
Aor13HI	TCCGGA	2 cut(s)	402, 2209
Aor51HI	AGCGCT	2 cut(s)	416, 2222
AoxI	GGCC	9 cut(s)	223, 273, 366, 718, 928, 1463, 2957, 3043, 3199
ApaLI	GTGCAC	1 cut(s)	1713
ApeKI	GCWGC	7 cut(s)	758, 1659, 1856, 1859, 3584, 3587, 3611
ApoI	RAATTY	8 cut(s)	667, 916, 1330, 1571, 1790, 2094, 2183, 3602
ArsI	GACNNNNNNTTYG	4 cut(s)	276, 308, 346, 378
AseI	ATTAAT	1 cut(s)	2348
AsiGI	ACCGGT	1 cut(s)	695
Asp700I	GAANNNNTTC	3 cut(s)	1557, 3333, 3376
Asp718I	GGTACC	1 cut(s)	2745
AspLEI	GCGC	7 cut(s)	26, 51, 417, 423, 627, 1927, 2223
AspS9I	GGNCC	7 cut(s)	273, 405, 428, 719, 1464, 2945, 3044
AsuC2I	CCSGG	5 cut(s)	125, 126, 1696, 3510, 3547
AsuHPI	GGTGA	3 cut(s)	356, 809, 1076
AsuII	TTCGAA	2 cut(s)	2188, 3606
AsuNHI	GCTAGC	2 cut(s)	2243, 3397
AvaI	CYCGRG	3 cut(s)	124, 443, 848
AvaII	GGWCC	3 cut(s)	405, 428, 2945
AxyI	CCTNAGG	1 cut(s)	2703
BaeGI	GKGCMC	1 cut(s)	1717
BaeI	ACNNNNGTAYC	4 cut(s)	1976, 2009, 2970, 3003
BalI	TGGCCA	2 cut(s)	368, 930
BanI	GGYRCC	1 cut(s)	2745
BanII	GRGCYC	1 cut(s)	2784
BauI	CACGAG	1 cut(s)	3728
BbsI	GAAGAC	4 cut(s)	558, 692, 2230, 2429
Bbv12I	GWGCWC	3 cut(s)	1717, 2119, 2784
BbvI	GCAGC	7 cut(s)	745, 1646, 1846, 1868, 3571, 3574, 3598
BccI	CCATC	8 cut(s)	97, 335, 982, 1171, 1643, 2468, 3166, 3670
BceAI	ACGGC	3 cut(s)	37, 238, 1605
BcgI	CGANNNNNNTGC	2 cut(s)	1841, 1875
BciT130I	CCWGG	7 cut(s)	277, 861, 1874, 2021, 2315, 2427, 3598
BcnI	CCSGG	5 cut(s)	125, 126, 1696, 3510, 3547
BcuI	ACTAGT	3 cut(s)	1474, 1543, 3722
BfmI	CTRYAG	2 cut(s)	1615, 3126
BfoI	RGCGCY	3 cut(s)	52, 418, 2224
BfrI	CTTAAG	1 cut(s)	1967
BglII	AGATCT	1 cut(s)	2104
BmcAI	AGTACT	1 cut(s)	1518
Bme18I	GGWCC	3 cut(s)	405, 428, 2945
BmeRI	GACNNNNNGTC	1 cut(s)	2879
BmeT110I	CYCGRG	3 cut(s)	124, 443, 848
BmgBI	CACGTC	2 cut(s)	8, 3293
BmgT120I	GGNCC	7 cut(s)	273, 405, 428, 719, 1464, 2945, 3044
BmiI	GGNNCC	8 cut(s)	130, 634, 721, 1560, 1693, 2747, 2946, 2947
BmrI	ACTGGG	2 cut(s)	268, 3100
BmtI	GCTAGC	2 cut(s)	2247, 3401
BmuI	ACTGGG	2 cut(s)	268, 3100
BpiI	GAAGAC	4 cut(s)	558, 692, 2230, 2429
BplI	GAGNNNNNCTC	4 cut(s)	1187, 1219, 2686, 2718
BpmI	CTGGAG	3 cut(s)	587, 1895, 2297
Bpu14I	TTCGAA	2 cut(s)	2188, 3606
BpuEI	CTTGAG	1 cut(s)	2017
BpuMI	CCSGG	5 cut(s)	125, 126, 1696, 3510, 3547
Bsa29I	ATCGAT	1 cut(s)	2630
BsaAI	YACGTR	1 cut(s)	2592
BsaI	GGTCTC	2 cut(s)	1978, 2887
BsaJI	CCNNGG	8 cut(s)	124, 424, 444, 847, 860, 1467, 1695, 3597
BsaWI	WCCGGW	5 cut(s)	402, 635, 695, 2209, 2748
Bse118I	RCCGGY	1 cut(s)	695
Bse1I	ACTGG	7 cut(s)	263, 1389, 2904, 3046, 3106, 3282, 3665
Bse21I	CCTNAGG	1 cut(s)	2703
Bse3DI	GCAATG	4 cut(s)	1772, 2202, 3321, 3540
BseAI	TCCGGA	2 cut(s)	402, 2209
BseBI	CCWGG	7 cut(s)	277, 861, 1874, 2021, 2315, 2427, 3598
BseCI	ATCGAT	1 cut(s)	2630
BseDI	CCNNGG	8 cut(s)	124, 424, 444, 847, 860, 1467, 1695, 3597
BseMI	GCAATG	4 cut(s)	1772, 2202, 3321, 3540
BseNI	ACTGG	7 cut(s)	263, 1389, 2904, 3046, 3106, 3282, 3665
BseRI	GAGGAG	4 cut(s)	467, 554, 557, 560
BseSI	GKGCMC	1 cut(s)	1717
BseXI	GCAGC	7 cut(s)	745, 1646, 1846, 1868, 3571, 3574, 3598
BseYI	CCCAGC	1 cut(s)	119
BsgI	GTGCAG	2 cut(s)	1257, 1450
Bsh1236I	CGCG	2 cut(s)	627, 2337
BshFI	GGCC	9 cut(s)	225, 275, 368, 720, 930, 1465, 2959, 3045, 3201
BshNI	GGYRCC	1 cut(s)	2745
BshTI	ACCGGT	1 cut(s)	695
BshVI	ATCGAT	1 cut(s)	2630
BsiHKAI	GWGCWC	3 cut(s)	1717, 2119, 2784
BsiHKCI	CYCGRG	3 cut(s)	124, 443, 848
BslFI	GGGAC	5 cut(s)	612, 1927, 2958, 2972, 3310
BsmFI	GGGAC	5 cut(s)	612, 1927, 2958, 2972, 3310
BsmI	GAATGC	1 cut(s)	2272
BsnI	GGCC	9 cut(s)	225, 275, 368, 720, 930, 1465, 2959, 3045, 3201
Bso31I	GGTCTC	2 cut(s)	1978, 2887
BsoBI	CYCGRG	3 cut(s)	124, 443, 848
Bsp119I	TTCGAA	2 cut(s)	2188, 3606
Bsp1286I	GDGCHC	3 cut(s)	1717, 2119, 2784
Bsp13I	TCCGGA	2 cut(s)	402, 2209
Bsp143I	GATC	8 cut(s)	246, 877, 1045, 2104, 2571, 2631, 3154, 3184
BspACI	CCGC	9 cut(s)	627, 630, 657, 776, 1281, 2298, 2337, 2354, 3326
BspANI	GGCC	9 cut(s)	225, 275, 368, 720, 930, 1465, 2959, 3045, 3201
BspDI	ATCGAT	1 cut(s)	2630
BspEI	TCCGGA	2 cut(s)	402, 2209
BspFNI	CGCG	2 cut(s)	627, 2337
BspHI	TCATGA	2 cut(s)	2521, 2967
BspLI	GGNNCC	8 cut(s)	130, 634, 721, 1560, 1693, 2747, 2946, 2947
BspMAI	CTGCAG	1 cut(s)	3130
BspOI	GCTAGC	2 cut(s)	2247, 3401
BspPI	GGATC	2 cut(s)	254, 872
BspT104I	TTCGAA	2 cut(s)	2188, 3606
BspT107I	GGYRCC	1 cut(s)	2745
BspTI	CTTAAG	1 cut(s)	1967
BspTNI	GGTCTC	2 cut(s)	1978, 2887
BsrBI	CCGCTC	1 cut(s)	657
BsrDI	GCAATG	4 cut(s)	1772, 2202, 3321, 3540
BsrFI	RCCGGY	1 cut(s)	695
BsrI	ACTGG	7 cut(s)	263, 1389, 2904, 3046, 3106, 3282, 3665
BssAI	RCCGGY	1 cut(s)	695
BssECI	CCNNGG	8 cut(s)	124, 424, 444, 847, 860, 1467, 1695, 3597
BssMI	GATC	8 cut(s)	246, 877, 1045, 2104, 2571, 2631, 3154, 3184
BssNAI	GTATAC	1 cut(s)	2699
BssSI	CACGAG	1 cut(s)	3728
Bst1107I	GTATAC	1 cut(s)	2699
Bst2BI	CACGAG	1 cut(s)	3728
Bst2UI	CCWGG	7 cut(s)	277, 861, 1874, 2021, 2315, 2427, 3598
Bst4CI	ACNGT	6 cut(s)	470, 1410, 1594, 1940, 2877, 3365
Bst6I	CTCTTC	4 cut(s)	345, 1761, 1912, 1952
BstAFI	CTTAAG	1 cut(s)	1967
BstBAI	YACGTR	1 cut(s)	2592
BstBI	TTCGAA	2 cut(s)	2188, 3606
BstDSI	CCRYGG	1 cut(s)	1467
BstEII	GGTNACC	1 cut(s)	1133
BstENI	CCTNNNNNAGG	3 cut(s)	808, 2430, 2523
BstFNI	CGCG	2 cut(s)	627, 2337
BstH2I	RGCGCY	3 cut(s)	52, 418, 2224
BstHHI	GCGC	7 cut(s)	26, 51, 417, 423, 627, 1927, 2223
BstKTI	GATC	8 cut(s)	249, 880, 1048, 2107, 2574, 2634, 3157, 3187
BstMBI	GATC	8 cut(s)	246, 877, 1045, 2104, 2571, 2631, 3154, 3184
BstMWI	GCNNNNNNNGC	5 cut(s)	178, 1659, 1721, 3084, 3551
BstNI	CCWGG	7 cut(s)	277, 861, 1874, 2021, 2315, 2427, 3598
BstNSI	RCATGY	3 cut(s)	707, 2556, 3450
BstPI	GGTNACC	1 cut(s)	1133
BstSFI	CTRYAG	2 cut(s)	1615, 3126
BstSLI	GKGCMC	1 cut(s)	1717
BstSNI	TACGTA	1 cut(s)	2592
BstUI	CGCG	2 cut(s)	627, 2337
BstV1I	GCAGC	7 cut(s)	745, 1646, 1846, 1868, 3571, 3574, 3598
BstV2I	GAAGAC	4 cut(s)	558, 692, 2230, 2429
BstX2I	RGATCY	1 cut(s)	2104
BstXI	CCANNNNNNTGG	1 cut(s)	3709
BstYI	RGATCY	1 cut(s)	2104
BstZ17I	GTATAC	1 cut(s)	2699
Bsu15I	ATCGAT	1 cut(s)	2630
Bsu36I	CCTNAGG	1 cut(s)	2703
BsuRI	GGCC	9 cut(s)	225, 275, 368, 720, 930, 1465, 2959, 3045, 3201
BsuTUI	ATCGAT	1 cut(s)	2630
BtgI	CCRYGG	1 cut(s)	1467
BtgZI	GCGATG	1 cut(s)	513
BtrI	CACGTC	2 cut(s)	8, 3293
BtsI	GCAGTG	2 cut(s)	1317, 1438
BtsIMutI	CAGTG	7 cut(s)	1317, 1438, 1936, 2088, 3039, 3275, 3361
CaiI	CAGNNNCTG	2 cut(s)	1316, 3233
CciI	TCATGA	2 cut(s)	2521, 2967
CfoI	GCGC	7 cut(s)	26, 51, 417, 423, 627, 1927, 2223
Cfr10I	RCCGGY	1 cut(s)	695
Cfr13I	GGNCC	7 cut(s)	273, 405, 428, 719, 1464, 2945, 3044
Cfr9I	CCCGGG	1 cut(s)	124
ClaI	ATCGAT	1 cut(s)	2630
CseI	GACGC	1 cut(s)	2666
CsiI	ACCWGGT	1 cut(s)	2425
Csp6I	GTAC	9 cut(s)	220, 256, 280, 334, 1517, 2593, 2746, 2979, 3207
CspAI	ACCGGT	1 cut(s)	695
CspCI	CAANNNNNGTGG	8 cut(s)	679, 714, 1092, 1127, 1180, 1215, 2259, 2294
CviQI	GTAC	9 cut(s)	220, 256, 280, 334, 1517, 2593, 2746, 2979, 3207
DpnI	GATC	8 cut(s)	248, 879, 1047, 2106, 2573, 2633, 3156, 3186
DpnII	GATC	8 cut(s)	246, 877, 1045, 2104, 2571, 2631, 3154, 3184
DraI	TTTAAA	1 cut(s)	2460
DraIII	CACNNNGTG	1 cut(s)	1942
DrdI	GACNNNNNNGTC	2 cut(s)	2952, 3223
DriI	GACNNNNNGTC	1 cut(s)	2879
DseDI	GACNNNNNNGTC	2 cut(s)	2952, 3223
EaeI	YGGCCR	3 cut(s)	223, 366, 928
Eam1104I	CTCTTC	4 cut(s)	345, 1761, 1912, 1952
Eam1105I	GACNNNNNGTC	1 cut(s)	2879
EarI	CTCTTC	4 cut(s)	345, 1761, 1912, 1952
Ecl136II	GAGCTC	1 cut(s)	2782
Eco105I	TACGTA	1 cut(s)	2592
Eco24I	GRGCYC	1 cut(s)	2784
Eco31I	GGTCTC	2 cut(s)	1978, 2887
Eco47I	GGWCC	3 cut(s)	405, 428, 2945
Eco47III	AGCGCT	2 cut(s)	416, 2222
Eco53kI	GAGCTC	1 cut(s)	2782
Eco57I	CTGAAG	4 cut(s)	1893, 3291, 3660, 3786
Eco81I	CCTNAGG	1 cut(s)	2703
Eco88I	CYCGRG	3 cut(s)	124, 443, 848
Eco91I	GGTNACC	1 cut(s)	1133
EcoICRI	GAGCTC	1 cut(s)	2782
EcoNI	CCTNNNNNAGG	3 cut(s)	808, 2430, 2523
EcoO109I	RGGNCCY	3 cut(s)	273, 428, 2945
EcoO65I	GGTNACC	1 cut(s)	1133
EcoRI	GAATTC	2 cut(s)	1571, 3602
EcoRII	CCWGG	7 cut(s)	275, 859, 1872, 2019, 2313, 2425, 3596
EcoT38I	GRGCYC	1 cut(s)	2784
FalI	AAGNNNNNCTT	4 cut(s)	2462, 2494, 2723, 2755
FaqI	GGGAC	5 cut(s)	612, 1927, 2958, 2972, 3310
FauNDI	CATATG	3 cut(s)	1638, 3441, 3616
FblI	GTMKAC	2 cut(s)	2698, 3734
FriOI	GRGCYC	1 cut(s)	2784
FspAI	RTGCGCAY	1 cut(s)	1926
FspI	TGCGCA	1 cut(s)	1926
GlaI	GCGC	7 cut(s)	25, 50, 416, 422, 626, 1926, 2222
GsaI	CCCAGC	1 cut(s)	123
GsuI	CTGGAG	3 cut(s)	587, 1895, 2297
HaeII	RGCGCY	3 cut(s)	52, 418, 2224
HaeIII	GGCC	9 cut(s)	225, 275, 368, 720, 930, 1465, 2959, 3045, 3201
HgaI	GACGC	1 cut(s)	2666
HhaI	GCGC	7 cut(s)	26, 51, 417, 423, 627, 1927, 2223
Hin6I	GCGC	7 cut(s)	24, 49, 415, 421, 625, 1925, 2221
HinP1I	GCGC	7 cut(s)	24, 49, 415, 421, 625, 1925, 2221
HincII	GTYRAC	7 cut(s)	40, 2380, 2449, 3066, 3538, 3670, 3720
HindII	GTYRAC	7 cut(s)	40, 2380, 2449, 3066, 3538, 3670, 3720
HindIII	AAGCTT	1 cut(s)	3025
HpaI	GTTAAC	2 cut(s)	40, 3670
HphI	GGTGA	3 cut(s)	356, 809, 1076
Hpy99I	CGWCG	4 cut(s)	12, 15, 341, 1191
HpyAV	CCTTC	8 cut(s)	73, 162, 278, 615, 1054, 1123, 2177, 2519
HpyCH4III	ACNGT	6 cut(s)	470, 1410, 1594, 1940, 2877, 3365
HpyCH4IV	ACGT	5 cut(s)	7, 1225, 2591, 2719, 3292
HpyF10VI	GCNNNNNNNGC	5 cut(s)	178, 1659, 1721, 3084, 3551
HpySE526I	ACGT	5 cut(s)	7, 1225, 2591, 2719, 3292
HspAI	GCGC	7 cut(s)	24, 49, 415, 421, 625, 1925, 2221
KflI	GGGWCCC	1 cut(s)	2945
Kpn2I	TCCGGA	2 cut(s)	402, 2209
KpnI	GGTACC	1 cut(s)	2749
KspAI	GTTAAC	2 cut(s)	40, 3670
Kzo9I	GATC	8 cut(s)	246, 877, 1045, 2104, 2571, 2631, 3154, 3184
LmnI	GCTCC	9 cut(s)	146, 638, 1031, 1180, 1691, 2218, 2316, 3113, 3220
Lsp1109I	GCAGC	7 cut(s)	745, 1646, 1846, 1868, 3571, 3574, 3598
MabI	ACCWGGT	1 cut(s)	2425
MaeII	ACGT	5 cut(s)	7, 1225, 2591, 2719, 3292
MalI	GATC	8 cut(s)	248, 879, 1047, 2106, 2573, 2633, 3156, 3186
MbiI	CCGCTC	1 cut(s)	657
MboI	GATC	8 cut(s)	246, 877, 1045, 2104, 2571, 2631, 3154, 3184
MfeI	CAATTG	2 cut(s)	2646, 2922
MflI	RGATCY	1 cut(s)	2104
MhlI	GDGCHC	3 cut(s)	1717, 2119, 2784
MlsI	TGGCCA	2 cut(s)	368, 930
MluNI	TGGCCA	2 cut(s)	368, 930
MlyI	GAGTC	9 cut(s)	594, 1898, 2012, 2540, 2585, 2816, 3499, 3740, 3749
MmeI	TCCRAC	1 cut(s)	3436
Mox20I	TGGCCA	2 cut(s)	368, 930
MroI	TCCGGA	2 cut(s)	402, 2209
MroXI	GAANNNNTTC	3 cut(s)	1557, 3333, 3376
MscI	TGGCCA	2 cut(s)	368, 930
Msp20I	TGGCCA	2 cut(s)	368, 930
MspA1I	CMGCKG	1 cut(s)	1859
MspCI	CTTAAG	1 cut(s)	1967
MunI	CAATTG	2 cut(s)	2646, 2922
Mva1269I	GAATGC	1 cut(s)	2272
MvaI	CCWGG	7 cut(s)	277, 861, 1874, 2021, 2315, 2427, 3598
MvnI	CGCG	2 cut(s)	627, 2337
MwoI	GCNNNNNNNGC	5 cut(s)	178, 1659, 1721, 3084, 3551
NciI	CCSGG	5 cut(s)	125, 126, 1696, 3510, 3547
NdeI	CATATG	3 cut(s)	1638, 3441, 3616
NdeII	GATC	8 cut(s)	246, 877, 1045, 2104, 2571, 2631, 3154, 3184
NheI	GCTAGC	2 cut(s)	2243, 3397
NlaIV	GGNNCC	8 cut(s)	130, 634, 721, 1560, 1693, 2747, 2946, 2947
NmeAIII	GCCGAG	1 cut(s)	449
NmuCI	GTSAC	8 cut(s)	3, 344, 1312, 1942, 2641, 2887, 3484, 3725
NsbI	TGCGCA	1 cut(s)	1926
NspI	RCATGY	3 cut(s)	707, 2556, 3450
NspV	TTCGAA	2 cut(s)	2188, 3606
PaeI	GCATGC	1 cut(s)	3450
PagI	TCATGA	2 cut(s)	2521, 2967
PciI	ACATGT	1 cut(s)	703
PcsI	WCGNNNNNNNCGW	1 cut(s)	345
PctI	GAATGC	1 cut(s)	2272
PdmI	GAANNNNTTC	3 cut(s)	1557, 3333, 3376
PflMI	CCANNNNNTGG	2 cut(s)	232, 1811
PfoI	TCCNGGA	1 cut(s)	2313
PinAI	ACCGGT	1 cut(s)	695
PleI	GAGTC	9 cut(s)	594, 1898, 2011, 2540, 2584, 2815, 3499, 3739, 3749
PpsI	GAGTC	9 cut(s)	594, 1898, 2011, 2540, 2584, 2815, 3499, 3739, 3749
Ppu21I	YACGTR	1 cut(s)	2592
PpuMI	RGGWCCY	2 cut(s)	428, 2945
PscI	ACATGT	1 cut(s)	703
PshBI	ATTAAT	1 cut(s)	2348
Psp124BI	GAGCTC	1 cut(s)	2784
Psp5II	RGGWCCY	2 cut(s)	428, 2945
Psp6I	CCWGG	7 cut(s)	275, 859, 1872, 2019, 2313, 2425, 3596
PspEI	GGTNACC	1 cut(s)	1133
PspFI	CCCAGC	1 cut(s)	119
PspGI	CCWGG	7 cut(s)	275, 859, 1872, 2019, 2313, 2425, 3596
PspN4I	GGNNCC	8 cut(s)	130, 634, 721, 1560, 1693, 2747, 2946, 2947
PspPI	GGNCC	7 cut(s)	273, 405, 428, 719, 1464, 2945, 3044
PspPPI	RGGWCCY	2 cut(s)	428, 2945
PstI	CTGCAG	1 cut(s)	3130
PstNI	CAGNNNCTG	2 cut(s)	1316, 3233
PsuI	RGATCY	1 cut(s)	2104
PvuII	CAGCTG	1 cut(s)	1859
RsaI	GTAC	9 cut(s)	221, 257, 281, 335, 1518, 2594, 2747, 2980, 3208
RsaNI	GTAC	9 cut(s)	220, 256, 280, 334, 1517, 2593, 2746, 2979, 3207
SacI	GAGCTC	1 cut(s)	2784
Sau3AI	GATC	8 cut(s)	246, 877, 1045, 2104, 2571, 2631, 3154, 3184
Sau96I	GGNCC	7 cut(s)	273, 405, 428, 719, 1464, 2945, 3044
ScaI	AGTACT	1 cut(s)	1518
SchI	GAGTC	9 cut(s)	594, 1898, 2012, 2540, 2585, 2816, 3499, 3740, 3749
SduI	GDGCHC	3 cut(s)	1717, 2119, 2784
SexAI	ACCWGGT	1 cut(s)	2425
SfcI	CTRYAG	2 cut(s)	1615, 3126
SfuI	TTCGAA	2 cut(s)	2188, 3606
SinI	GGWCC	3 cut(s)	405, 428, 2945
SmaI	CCCGGG	1 cut(s)	126
SmlI	CTYRAG	3 cut(s)	1967, 2032, 3791
SmoI	CTYRAG	3 cut(s)	1967, 2032, 3791
SnaBI	TACGTA	1 cut(s)	2592
SpeI	ACTAGT	3 cut(s)	1474, 1543, 3722
SphI	GCATGC	1 cut(s)	3450
SsiI	CCGC	9 cut(s)	627, 630, 657, 776, 1281, 2298, 2337, 2354, 3326
SspI	AATATT	2 cut(s)	793, 2761
SstI	GAGCTC	1 cut(s)	2784
TaaI	ACNGT	6 cut(s)	470, 1410, 1594, 1940, 2877, 3365
TaiI	ACGT	5 cut(s)	10, 1228, 2594, 2722, 3295
TatI	WGTACW	3 cut(s)	255, 1516, 3206
TauI	GCSGC	4 cut(s)	630, 633, 2300, 2357
TscAI	CASTG	7 cut(s)	1317, 1438, 1943, 2095, 3046, 3282, 3368
TseFI	GTSAC	8 cut(s)	3, 344, 1312, 1942, 2641, 2887, 3484, 3725
TseI	GCWGC	7 cut(s)	758, 1659, 1856, 1859, 3584, 3587, 3611
Tsp45I	GTSAC	8 cut(s)	3, 344, 1312, 1942, 2641, 2887, 3484, 3725
TspDTI	ATGAA	9 cut(s)	1017, 1073, 1121, 1566, 2399, 2538, 2712, 2727, 3297
TspGWI	ACGGA	4 cut(s)	661, 2278, 3233, 3327
TspMI	CCCGGG	1 cut(s)	124
TspRI	CASTG	7 cut(s)	1317, 1438, 1943, 2095, 3046, 3282, 3368
Van91I	CCANNNNNTGG	2 cut(s)	232, 1811
Vha464I	CTTAAG	1 cut(s)	1967
VneI	GTGCAC	1 cut(s)	1713
VpaK11BI	GGWCC	3 cut(s)	405, 428, 2945
VspI	ATTAAT	1 cut(s)	2348
XagI	CCTNNNNNAGG	3 cut(s)	808, 2430, 2523
XapI	RAATTY	8 cut(s)	667, 916, 1330, 1571, 1790, 2094, 2183, 3602
XbaI	TCTAGA	1 cut(s)	1864
XceI	RCATGY	3 cut(s)	707, 2556, 3450
XcmI	CCANNNNNNNNNTGG	3 cut(s)	445, 2108, 3458
XmaI	CCCGGG	1 cut(s)	124
XmiI	GTMKAC	2 cut(s)	2698, 3734
XmnI	GAANNNNTTC	3 cut(s)	1557, 3333, 3376
ZrmI	AGTACT	1 cut(s)	1518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.