Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0010841

Physical Location & Seq

Genomic Coordinates Forward (+)

42741510 .. 42742812

Gene Structure 1303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1315400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGAGACAATTGGTCTCTGTGATTGCAGTCTGGAGCATATTTTTTCATTCGCATTTTCTTTTAAAATCGATGTTTTAATCAGCCTAGCAATTGCAAGTGATTGTTTTGAAGGACCCTCTTGTCAGCCAGTGGTCATGAGTTCATCGTGTAGTAATGAAGGTACATTTGTATCCAACGACATTGCCATTAGAGGTTCTGGCCATGCGAGCTTTACCCTTCTCACTGGTCCTAACATGGGTGGAAGCAACTTAGGAGCAGATGTTCCTGCAGAGAGCTTTGAGCTATCTCCTGTTGACCGAATCTTTGTTTGTATGGGTGCTAAAGATAATATCATGGTATACATTTCTGACAGAGCTATCAGAAACTGCAACAATGCTGTCATCAGCTACTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000217 GO:0000404 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006259 GO:0006281 GO:0006290 GO:0006298 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030983 GO:0032135 GO:0032300 GO:0032991 GO:0033554 GO:0034641 GO:0042623 GO:0043170 GO:0043570 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko01524 ko03430 ko05200 ko05210 map01524 map03430 map05200 map05210

Pfam Domains

Protein Families

MutS_I MutS_II MutS_III MutS_IV MutS_V

Protein Analysis

132

Amino Acids

13.92

Weight (kDa)

4.36

Isoelectric Point (pI)

38.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010841)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02070 AT4G02070
fragaria_vesca	FvH4_5g39410 FvH4_5g39410 FvH4_5g39410 FvH4_5g39410
malus_domestica	MD01G1013000.v1.1 MD03G1296000.v1.1 MD11G1315400.v1.1
prunus_persica	Prupe.8G271300_v2.0.a1 Prupe.8G271300_v2.0.a1 Prupe.8G271300_v2.0.a1 Prupe.8G271300_v2.0.a1
pyrus_communis	pycom03g23420 pycom11g27540
rosa_laevigata	RLG00000000552
rosa_multiflora	Rmu_sc0022843.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218800
rosa_samantha	Rh7CG517400 Rh7DG485900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	120
AccI	GTMKAC	1 cut(s)	339
AcoI	YGGCCR	1 cut(s)	199
AfaI	GTAC	1 cut(s)	163
AfiI	CCNNNNNNNGG	1 cut(s)	236
AgsI	TTSAA	1 cut(s)	110
AhdI	GACNNNNNGTC	1 cut(s)	12
AloI	GAACNNNNNNTCC	2 cut(s)	246, 278
AluBI	AGCT	5 cut(s)	210, 276, 283, 356, 387
AluI	AGCT	5 cut(s)	210, 276, 283, 356, 387
Alw26I	GTCTC	1 cut(s)	20
AlwNI	CAGNNNCTG	1 cut(s)	366
AoxI	GGCC	1 cut(s)	199
ArsI	GACNNNNNNTTYG	2 cut(s)	287, 319
AspS9I	GGNCC	2 cut(s)	113, 227
AvaII	GGWCC	2 cut(s)	113, 227
BaeI	ACNNNNGTAYC	4 cut(s)	153, 153, 186, 186
BalI	TGGCCA	1 cut(s)	201
BciVI	GTATCC	1 cut(s)	181
BcoDI	GTCTC	1 cut(s)	20
BfaI	CTAG	1 cut(s)	86
BfmI	CTRYAG	1 cut(s)	267
BfuI	GTATCC	1 cut(s)	181
Bme18I	GGWCC	2 cut(s)	113, 227
BmeRI	GACNNNNNGTC	1 cut(s)	12
BmgT120I	GGNCC	2 cut(s)	113, 227
BmiI	GGNNCC	1 cut(s)	115
BpmI	CTGGAG	1 cut(s)	53
Bsa29I	ATCGAT	1 cut(s)	69
BsaI	GGTCTC	1 cut(s)	20
BsaXI	ACNNNNNCTCC	2 cut(s)	246, 276
Bsc4I	CCNNNNNNNGG	1 cut(s)	236
Bse1I	ACTGG	2 cut(s)	128, 229
Bse3DI	GCAATG	1 cut(s)	180
BseCI	ATCGAT	1 cut(s)	69
BseLI	CCNNNNNNNGG	1 cut(s)	236
BseMI	GCAATG	1 cut(s)	180
BseNI	ACTGG	2 cut(s)	128, 229
BshFI	GGCC	1 cut(s)	201
BshVI	ATCGAT	1 cut(s)	69
BslI	CCNNNNNNNGG	1 cut(s)	236
BsmAI	GTCTC	1 cut(s)	20
BsnI	GGCC	1 cut(s)	201
Bso31I	GGTCTC	1 cut(s)	20
BspANI	GGCC	1 cut(s)	201
BspDI	ATCGAT	1 cut(s)	69
BspHI	TCATGA	1 cut(s)	135
BspLI	GGNNCC	1 cut(s)	115
BspMAI	CTGCAG	1 cut(s)	271
BspTNI	GGTCTC	1 cut(s)	20
BsrDI	GCAATG	1 cut(s)	180
BsrI	ACTGG	2 cut(s)	128, 229
BssNAI	GTATAC	1 cut(s)	340
Bst1107I	GTATAC	1 cut(s)	340
BstC8I	GCNNGC	1 cut(s)	208
BstDEI	CTNAG	1 cut(s)	250
BstMAI	GTCTC	1 cut(s)	20
BstMWI	GCNNNNNNNGC	1 cut(s)	207
BstSFI	CTRYAG	1 cut(s)	267
BstZ17I	GTATAC	1 cut(s)	340
Bsu15I	ATCGAT	1 cut(s)	69
BsuI	GTATCC	1 cut(s)	181
BsuRI	GGCC	1 cut(s)	201
BsuTUI	ATCGAT	1 cut(s)	69
BtsIMutI	CAGTG	2 cut(s)	135, 222
Cac8I	GCNNGC	1 cut(s)	208
CaiI	CAGNNNCTG	1 cut(s)	366
CciI	TCATGA	1 cut(s)	135
Cfr13I	GGNCC	2 cut(s)	113, 227
ClaI	ATCGAT	1 cut(s)	69
Csp6I	GTAC	1 cut(s)	162
CviAII	CATG	4 cut(s)	136, 203, 235, 334
CviJI	RGCY	8 cut(s)	84, 127, 201, 210, 276, 283, 356, 387
CviKI_1	RGCY	8 cut(s)	84, 127, 201, 210, 276, 283, 356, 387
CviQI	GTAC	1 cut(s)	162
DdeI	CTNAG	1 cut(s)	250
DraI	TTTAAA	1 cut(s)	64
DrdI	GACNNNNNNGTC	1 cut(s)	120
DriI	GACNNNNNGTC	1 cut(s)	12
DseDI	GACNNNNNNGTC	1 cut(s)	120
EaeI	YGGCCR	1 cut(s)	199
Eam1105I	GACNNNNNGTC	1 cut(s)	12
Eco31I	GGTCTC	1 cut(s)	20
Eco47I	GGWCC	2 cut(s)	113, 227
EcoO109I	RGGNCCY	1 cut(s)	113
FaeI	CATG	4 cut(s)	139, 206, 238, 337
FaiI	YATR	7 cut(s)	39, 137, 204, 236, 314, 335, 340
FatI	CATG	4 cut(s)	135, 202, 234, 333
FblI	GTMKAC	1 cut(s)	339
FspBI	CTAG	1 cut(s)	86
GsuI	CTGGAG	1 cut(s)	53
HaeIII	GGCC	1 cut(s)	201
Hin1II	CATG	4 cut(s)	139, 206, 238, 337
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HinfI	GANTC	1 cut(s)	300
Hpy166II	GTNNAC	2 cut(s)	295, 340
Hpy188I	TCNGA	2 cut(s)	349, 362
Hpy188III	TCNNGA	2 cut(s)	32, 136
Hpy8I	GTNNAC	2 cut(s)	295, 340
HpyAV	CCTTC	3 cut(s)	104, 152, 227
HpyCH4V	TGCA	4 cut(s)	27, 95, 269, 369
HpyF10VI	GCNNNNNNNGC	1 cut(s)	207
HpyF3I	CTNAG	1 cut(s)	250
Hsp92II	CATG	4 cut(s)	139, 206, 238, 337
LmnI	GCTCC	2 cut(s)	34, 254
LpnPI	CCDG	6 cut(s)	17, 141, 183, 210, 279, 303
MaeI	CTAG	1 cut(s)	86
MfeI	CAATTG	2 cut(s)	9, 90
MlsI	TGGCCA	1 cut(s)	201
MluCI	AATT	2 cut(s)	9, 90
MluNI	TGGCCA	1 cut(s)	201
MmeI	TCCRAC	1 cut(s)	198
MnlI	CCTC	2 cut(s)	127, 185
Mox20I	TGGCCA	1 cut(s)	201
MscI	TGGCCA	1 cut(s)	201
MseI	TTAA	2 cut(s)	63, 77
Msp20I	TGGCCA	1 cut(s)	201
MunI	CAATTG	2 cut(s)	9, 90
MwoI	GCNNNNNNNGC	1 cut(s)	207
NlaIII	CATG	4 cut(s)	139, 206, 238, 337
NlaIV	GGNNCC	1 cut(s)	115
PagI	TCATGA	1 cut(s)	135
PfeI	GAWTC	1 cut(s)	300
PpuMI	RGGWCCY	1 cut(s)	113
Psp5II	RGGWCCY	1 cut(s)	113
PspN4I	GGNNCC	1 cut(s)	115
PspPI	GGNCC	2 cut(s)	113, 227
PspPPI	RGGWCCY	1 cut(s)	113
PstI	CTGCAG	1 cut(s)	271
PstNI	CAGNNNCTG	1 cut(s)	366
RsaI	GTAC	1 cut(s)	163
RsaNI	GTAC	1 cut(s)	162
SaqAI	TTAA	2 cut(s)	63, 77
Sau96I	GGNCC	2 cut(s)	113, 227
SetI	ASST	7 cut(s)	163, 196, 212, 278, 285, 358, 389
SfcI	CTRYAG	1 cut(s)	267
SinI	GGWCC	2 cut(s)	113, 227
Sse9I	AATT	2 cut(s)	9, 90
SspMI	CTAG	1 cut(s)	86
TaqI	TCGA	1 cut(s)	69
TaqII	GACCGA	1 cut(s)	312
TasI	AATT	2 cut(s)	9, 90
TfiI	GAWTC	1 cut(s)	300
Tru1I	TTAA	2 cut(s)	63, 77
Tru9I	TTAA	2 cut(s)	63, 77
TscAI	CASTG	2 cut(s)	135, 229
TspDTI	ATGAA	3 cut(s)	36, 132, 171
TspRI	CASTG	2 cut(s)	135, 229
VpaK11BI	GGWCC	2 cut(s)	113, 227
XmiI	GTMKAC	1 cut(s)	339
XspI	CTAG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.