Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0010841

Physical Location & Seq

Genomic Coordinates Forward (+)

1948699 .. 1957184

Gene Structure 8486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000552

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3810 bp

ATGTCACGTCGTCGAAGCAACGGAGCATCCCCATTGGTTAACCCACAGCGCCAAATCACTTCCTTCTTCGCCAAAGCCACTTCCTCTCCATCTCCAATCCCTAAATCTAAACCTAAACCCAGCCCGGGTTCCAGCCCTAGCTCCACCACGCCTTCGCCTCTCCAATCCAAGCCTAAGCCCAATCCCGATCCCGATCCCAATCCGAAGAAATTGTTGTACGGCCAAGAGGTGGTCGGCAAGAGGATCAAGGTGTACTGGGCGAGTGATAGGGCCTGGTACGAAGGCTGTGTCAAGTTGTTCAATAAGGAGAGTGGTAAGCACTTACTTCAGTACGACGATGGCGACGAAGAGACTTTGGATTTGGCCACCGAGAAAATCGAGTGGATTCAAGAGACCGTCCAGACCTTTAAGCGCTTGCGCCGCGGTCCTTTGCCCACTCCCGAGGCGGAGGAGGAGGAGGTCAAGGAAGACAGTGATGATGATGATGATGATGATTCCGGCGATGAGGATTGGGGAAAGAGTGTGGAAAAGGAACTAGTTGAGGAGGAAGACGAGGTTATGGAATTGGAGGATGAGGAAGATGATGATGATGATGATGAGGGACTCCAGCCCAAGTCCAAAGCAAGGCGCGGCGGCTCCGGTGGTAAACGGAAGTTGAGCGGTGGAGGGAATTTGGGGTCTGCTAAGAAGACCAAGACTGGTGGACATGTAGCCACTAATGGCCTCAAGCCTAAAGGGATTCAGCCTACTGCTACTACTACTACTACTAATGCTGCTGACAGCACAAAGGCGGTTAATGGTATCAATATTGGTGATGCCTCAGAAAGGTTTAGCAAGCGTGAAGCTGACAAGTTCCATTTCCTCGGGGAAAAACGCAGGGATGCCAAAAAGAGACAACCTGGGGATGCAAATTATGATCCAAGAACTCTATATCTACCTCCTGATTTCTTAAAGAGTTTATCAGGTGGCCAGAGACAATGGTGGGAGTTTAAGTCAAAGCACATGGACAAAGTTCTATTTTTCAAGATGGGCAAGTTCTATGAACTTTTTGAAATGGATGCACATATAGGAGCAAAAGAACTTGATCTTCAATATATGAAGGGTGAACAACCCCATTGTGGATTTCCAGAGAAGAACTTTTCAATGAATGTGGAGAAACTGGCTAGGAAGGGTTACCGAGTTCTTGTCATTGAGCAGACAGAAACACCTGAACAGATGGAGCTTCGTCGCAAAGAGGGTGGCTCTAAAGATAAGGTTGTGAAACGTGAAGTATGTGCAGTAGTTACAAAAGGAACACTAACTGAGGGAGAGATGCTGTCCGCAAACCCTGATGCTTCTTATCTAATGGCAGTGACTGAAACCTCTCAAAATTTAGCAAACCAAAATGGCGAGCGTATTTTTGGAGTTTGTGTGGTTGATGTTGCTACCAGTAGGGTTATTCTTGGACAGTTCGCAGATGATTTAGAGTGCAGTGCCTTGTCTTGTCTCTTGTCTGAATTGAGGCCCGTGGAACTAGTAAAACCAGCAGAACTACTTAGTCCTGAGACAGAAAAAGTACTGCTAAGACATACAAGAAGTCCACTAGTGAATGAGTTGGTTCCACTTCTGGAATTCTGGGATGCTGAGAGAACTGTTTGTGAAGTTAAAAGTATCTATAGCCGTGCTGATGATTCTCATATGGAAGAAGATGTCTTGGGCTGCCTGCCAGATGTATTGTCTGAGCTTGTGGGAGCCGGGGAGAATGGCATCTGTGCACTTTCAGCTCTTGGGGGTGTTCTTTTCTACTTAAAGCAGGCTTTTCTAGAAGAGACATTGCTTAGGTTTGCAAAATTTGAGTTACTTCCAAGTTCTGGTTTTGGTGGTATCATATCAAAACCATACATGGTTCTCGATGCAGCTGCTCTAGAGAACCTGGAGATTTTTGAAAACAGCAGAAATGGAGACTCTTCAGGGACAATGTATGCGCAATTGAATCACTGTGTGACTGCATTTGGGAAGAGATTGCTTAAGACATGGCTTGCGAGACCTCTGTATCATGTAGAGTCAATTAAGGAACGCCAGGATGCTGTCTCAAGTTTACGAGGAATCAACCTTCCTCACGCACTTGAATTTCGAAAAGCAATGGCTAGGCTTCCGGACATGGAGCGCTTGCTTGCACGGGTCTTTGCTAGCAGTAAAGCTAGTGGAAGGAATGCAAACAAAGTGGTTTTATATGAGGATGCCGCAAAAAAACAGCTCCAGGAGTTTATTACAGCTCTACGCGGTTGTGAATTAATGGCAGCAACAAGTTGCTCTCTTGGTGTCAACTTGGGAAATGTTGAATCTCGACAACTTCATCATTTGCTGACACCTGGTAAAGGTCTTCCTAATGTCAACTCAGTTTTAAAGCACTTCAAGGATGGCTTTGATTGGGTAGAAGCCAATAGTTCAGGTCGAATAATACCTCATGAAGGAGTTGATACTGAATACGACGCTGCATGTGGAAAAGTAAAAGAGATCGAGTCTCATTTAACTAAGTACCTTGAAGAACAGAGGAAATTACTCGGAGATAAATTGATCACTTATGTCACAATTGGAAAAGACGCATACCTATTGGAAGTTCCAGAAAGTTTGCGTGAGAGTATACCTCAGGATTATGAATTACGTTCATCCAAAAAGGGTTTCTTTAGGTACTGGACACCAAATATTAAGAAGTCATTGACTGAGCTCTCACAAGCTGAATCTGATAGGGAGTCCTCACTTAAAAGCATTTTGCACAGGTTAATTGGACAATTCTGCGAGCATCATATTAAGTGGAGACAGTTGGTCTCTGTGACTGCTGAACTGGATGTTTTAATCAGTCTAGCAATTGCAAGTGATTATTACGAGGGACCCACCTGTCGGCCTGTTATCATGAGTTCATCAGATACAGATGAAGTACCCCTCTTGTCCGCAAATAGTTTGGGACATCCTGTTCTTAGAAGTGATTCTTTAGGAAAAGGTACATTTGTCCCCAATGACATTACTCTTGGAGGTTCTGGTCATGCAAGCTTTGTCCTTCTCACCGGCCCTAACATGGGTGGGAAGTCAACTCTGCTTCGCCAAGTTTGCTTGGCTGTGATTTTAGCCCAGTTAGGAGCAGATGTGCCTGCAGAGAGCTTTGAGCTGTCTCCTGTTGATCGCATCTTTGTTCGGATGGGTGCTAAAGATCATATCATGGTAGGCCAAAGTACATTTCTGACAGAGCTGTCAGAAACTGCAACAATGCTGTCATCTGCTACTCGTAACTCGTTGGTAGCACTGGATGAACTTGGACGTGGGACATCAACTTCAGATGGACAAGCCATTGCGGAGTCAGTTCTTGAACATTTTGTCCACAAGGTTCACTGTCGAGGAATGTTTTCTACTCACTATCACAGGCTAGCTGTGGATTATCAGAATAATTCTCAGGTTTCACTCTGCCATATGGCATGCCATGTTGGAAATGGAGATGCTGGTGTAGAAGAAGTGACATTTCTTTACAGATTGACTCCCGGTGCTTGTCCTAAAAGCTATGGTGTCAACATTGCCCGGTTAGCTGGACTTCCTATTTCTGTGCTTCAAAAAGCTGCCGCTAAGTCCAGGGAATTTGAAGCTGCATATGGTAAACACTTGAAGCAATCTGAAGATAGCTTTCCCTTTCAAAGTCCAGTTGACAAGATGGTTGATTGCATCCAAAAGTTTACCAACATCGTGGCAAAGTTGACTACTCACGAGTCTACTGAGGGTATCGACATTGACTCCCTGACTGAAGTCTGGCATAAAGCAAGATTGCTTGAGCAACAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000217 GO:0000404 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006259 GO:0006281 GO:0006290 GO:0006298 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030983 GO:0032135 GO:0032300 GO:0032991 GO:0033554 GO:0034641 GO:0042623 GO:0043170 GO:0043570 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko01524 ko03430 ko05200 ko05210 map01524 map03430 map05200 map05210

Pfam Domains

Protein Families

MutS_I MutS_II MutS_III MutS_IV MutS_V

Protein Analysis

1270

Amino Acids

140.39

Weight (kDa)

5.71

Isoelectric Point (pI)

48.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MutS_I	PF01624	323 - 436	7.5e-33	MutS domain I
MutS_II	PF05188	446 - 598	8.5e-09	MutS domain II
MutS_III	PF05192	633 - 949	3.5e-34	MutS domain III
MutS_IV	PF05190	818 - 908	1.4e-15	MutS family domain IV
MutS_V	PF00488	1013 - 1203	2.5e-67	MutS domain V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010841)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02070 AT4G02070
fragaria_vesca	FvH4_5g39410 FvH4_5g39410 FvH4_5g39410 FvH4_5g39410
malus_domestica	MD01G1013000.v1.1 MD03G1296000.v1.1 MD11G1315400.v1.1
prunus_persica	Prupe.8G271300_v2.0.a1 Prupe.8G271300_v2.0.a1 Prupe.8G271300_v2.0.a1 Prupe.8G271300_v2.0.a1
pyrus_communis	pycom03g23420 pycom11g27540
rosa_laevigata	RLG00000000552
rosa_multiflora	Rmu_sc0022843.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218800
rosa_samantha	Rh7CG517400 Rh7DG485900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	2877, 3226
Acc16I	TGCGCA	1 cut(s)	1965
AccB7I	CCANNNNNTGG	2 cut(s)	229, 1850
AccBSI	CCGCTC	1 cut(s)	660
AccI	GTMKAC	2 cut(s)	2623, 3737
AccII	CGCG	3 cut(s)	423, 630, 2262
AccIII	TCCGGA	1 cut(s)	2134
AclWI	GGATC	4 cut(s)	182, 188, 251, 911
AcoI	YGGCCR	3 cut(s)	220, 363, 967
AcsI	RAATTY	6 cut(s)	670, 1369, 1610, 1829, 2108, 3605
AcuI	CTGAAG	5 cut(s)	311, 1932, 3294, 3663, 3789
AdeI	CACNNNGTG	1 cut(s)	1981
AfeI	AGCGCT	2 cut(s)	413, 2147
AflII	CTTAAG	1 cut(s)	2006
AflIII	ACRYGT	1 cut(s)	706
AhdI	GACNNNNNGTC	1 cut(s)	2804
AhlI	ACTAGT	3 cut(s)	535, 1513, 1582
AjiI	CACGTC	2 cut(s)	8, 3296
AjnI	CCWGG	7 cut(s)	272, 898, 1911, 2058, 2238, 2350, 3599
AjuI	GAANNNNNNNTTGG	4 cut(s)	2645, 2677, 3198, 3230
AloI	GAACNNNNNNTCC	4 cut(s)	2937, 2969, 3336, 3368
Alw21I	GWGCWC	2 cut(s)	1756, 2709
Alw44I	GTGCAC	1 cut(s)	1752
AlwI	GGATC	4 cut(s)	182, 188, 251, 911
AlwNI	CAGNNNCTG	2 cut(s)	1355, 3236
Ama87I	CYCGRG	3 cut(s)	124, 440, 863
Aor13HI	TCCGGA	1 cut(s)	2134
Aor51HI	AGCGCT	2 cut(s)	413, 2147
AoxI	GGCC	9 cut(s)	220, 270, 363, 721, 967, 1502, 2882, 3046, 3202
ApaLI	GTGCAC	1 cut(s)	1752
ApeKI	GCWGC	8 cut(s)	773, 1698, 1895, 1898, 2279, 2474, 3587, 3614
ApoI	RAATTY	6 cut(s)	670, 1369, 1610, 1829, 2108, 3605
ArsI	GACNNNNNNTTYG	4 cut(s)	273, 305, 343, 375
AseI	ATTAAT	1 cut(s)	2273
Asp700I	GAANNNNTTC	2 cut(s)	2965, 3379
AspLEI	GCGC	6 cut(s)	51, 414, 420, 630, 1966, 2148
AspS9I	GGNCC	5 cut(s)	270, 425, 1503, 2870, 3047
AsuC2I	CCSGG	5 cut(s)	125, 126, 1735, 3513, 3550
AsuHPI	GGTGA	3 cut(s)	824, 1115, 3034
AsuII	TTCGAA	1 cut(s)	2113
AsuNHI	GCTAGC	2 cut(s)	2168, 3400
AvaI	CYCGRG	3 cut(s)	124, 440, 863
AvaII	GGWCC	2 cut(s)	425, 2870
AxyI	CCTNAGG	1 cut(s)	2628
BaeGI	GKGCMC	1 cut(s)	1756
BaeI	ACNNNNGTAYC	4 cut(s)	2015, 2048, 2973, 3006
BalI	TGGCCA	2 cut(s)	365, 969
BanII	GRGCYC	1 cut(s)	2709
BauI	CACGAG	1 cut(s)	3731
BbsI	GAAGAC	4 cut(s)	474, 555, 695, 2354
Bbv12I	GWGCWC	2 cut(s)	1756, 2709
BbvI	GCAGC	8 cut(s)	760, 1685, 1885, 1907, 2291, 2461, 3574, 3601
BccI	CCATC	8 cut(s)	97, 332, 1021, 1210, 2393, 3169, 3308, 3673
BceAI	ACGGC	2 cut(s)	235, 1644
BcgI	CGANNNNNNTGC	2 cut(s)	1880, 1914
BciT130I	CCWGG	7 cut(s)	274, 900, 1913, 2060, 2240, 2352, 3601
BclI	TGATCA	1 cut(s)	2556
BcnI	CCSGG	5 cut(s)	125, 126, 1735, 3513, 3550
BcuI	ACTAGT	3 cut(s)	535, 1513, 1582
BfmI	CTRYAG	2 cut(s)	1654, 3129
BfoI	RGCGCY	3 cut(s)	52, 415, 2149
BfrI	CTTAAG	1 cut(s)	2006
BmcAI	AGTACT	1 cut(s)	1557
Bme18I	GGWCC	2 cut(s)	425, 2870
BmeRI	GACNNNNNGTC	1 cut(s)	2804
BmeT110I	CYCGRG	3 cut(s)	124, 440, 863
BmgBI	CACGTC	2 cut(s)	8, 3296
BmgT120I	GGNCC	5 cut(s)	270, 425, 1503, 2870, 3047
BmiI	GGNNCC	6 cut(s)	130, 637, 1599, 1732, 2871, 2872
BmrI	ACTGGG	2 cut(s)	265, 3103
BmtI	GCTAGC	2 cut(s)	2172, 3404
BmuI	ACTGGG	2 cut(s)	265, 3103
BoxI	GACNNNNGTC	1 cut(s)	3770
BpiI	GAAGAC	4 cut(s)	474, 555, 695, 2354
BplI	GAGNNNNNCTC	4 cut(s)	1226, 1258, 2611, 2643
BpmI	CTGGAG	3 cut(s)	590, 1934, 2222
Bpu10I	CCTNAGC	2 cut(s)	174, 1817
Bpu14I	TTCGAA	1 cut(s)	2113
BpuEI	CTTGAG	2 cut(s)	710, 2056
BpuMI	CCSGG	5 cut(s)	125, 126, 1735, 3513, 3550
BsaBI	GATNNNNATC	2 cut(s)	192, 198
BsaI	GGTCTC	3 cut(s)	386, 2017, 2812
BsaJI	CCNNGG	8 cut(s)	124, 421, 441, 862, 899, 1506, 1734, 3600
BsaWI	WCCGGW	2 cut(s)	638, 2134
Bse118I	RCCGGY	1 cut(s)	3044
Bse1I	ACTGG	9 cut(s)	260, 703, 1164, 1428, 2678, 2829, 3109, 3285, 3668
Bse21I	CCTNAGG	1 cut(s)	2628
Bse3DI	GCAATG	4 cut(s)	1811, 2127, 3324, 3543
Bse8I	GATNNNNATC	2 cut(s)	192, 198
BseAI	TCCGGA	1 cut(s)	2134
BseBI	CCWGG	7 cut(s)	274, 900, 1913, 2060, 2240, 2352, 3601
BseDI	CCNNGG	8 cut(s)	124, 421, 441, 862, 899, 1506, 1734, 3600
BseJI	GATNNNNATC	2 cut(s)	192, 198
BseMI	GCAATG	4 cut(s)	1811, 2127, 3324, 3543
BseNI	ACTGG	9 cut(s)	260, 703, 1164, 1428, 2678, 2829, 3109, 3285, 3668
BseRI	GAGGAG	4 cut(s)	464, 467, 470, 557
BseSI	GKGCMC	1 cut(s)	1756
BseXI	GCAGC	8 cut(s)	760, 1685, 1885, 1907, 2291, 2461, 3574, 3601
BseYI	CCCAGC	1 cut(s)	119
BsgI	GTGCAG	2 cut(s)	1296, 1489
Bsh1236I	CGCG	3 cut(s)	423, 630, 2262
BshFI	GGCC	9 cut(s)	222, 272, 365, 723, 969, 1504, 2884, 3048, 3204
BsiHKAI	GWGCWC	2 cut(s)	1756, 2709
BsiHKCI	CYCGRG	3 cut(s)	124, 440, 863
BsiSI	CCGG	8 cut(s)	125, 498, 639, 1734, 2135, 3045, 3513, 3550
BslFI	GGGAC	6 cut(s)	615, 1966, 2883, 2958, 2975, 3313
BsmFI	GGGAC	6 cut(s)	615, 1966, 2883, 2958, 2975, 3313
BsmI	GAATGC	1 cut(s)	2197
BsnI	GGCC	9 cut(s)	222, 272, 365, 723, 969, 1504, 2884, 3048, 3204
Bso31I	GGTCTC	3 cut(s)	386, 2017, 2812
BsoBI	CYCGRG	3 cut(s)	124, 440, 863
Bsp119I	TTCGAA	1 cut(s)	2113
Bsp1286I	GDGCHC	2 cut(s)	1756, 2709
Bsp13I	TCCGGA	1 cut(s)	2134
Bsp143I	GATC	9 cut(s)	187, 193, 243, 916, 1084, 2496, 2556, 3157, 3187
BspANI	GGCC	9 cut(s)	222, 272, 365, 723, 969, 1504, 2884, 3048, 3204
BspEI	TCCGGA	1 cut(s)	2134
BspFNI	CGCG	3 cut(s)	423, 630, 2262
BspHI	TCATGA	2 cut(s)	2446, 2892
BspLI	GGNNCC	6 cut(s)	130, 637, 1599, 1732, 2871, 2872
BspMAI	CTGCAG	1 cut(s)	3133
BspOI	GCTAGC	2 cut(s)	2172, 3404
BspPI	GGATC	4 cut(s)	182, 188, 251, 911
BspT104I	TTCGAA	1 cut(s)	2113
BspTI	CTTAAG	1 cut(s)	2006
BspTNI	GGTCTC	3 cut(s)	386, 2017, 2812
BsrBI	CCGCTC	1 cut(s)	660
BsrDI	GCAATG	4 cut(s)	1811, 2127, 3324, 3543
BsrFI	RCCGGY	1 cut(s)	3044
BsrI	ACTGG	9 cut(s)	260, 703, 1164, 1428, 2678, 2829, 3109, 3285, 3668
BssAI	RCCGGY	1 cut(s)	3044
BssECI	CCNNGG	8 cut(s)	124, 421, 441, 862, 899, 1506, 1734, 3600
BssMI	GATC	9 cut(s)	187, 193, 243, 916, 1084, 2496, 2556, 3157, 3187
BssNAI	GTATAC	1 cut(s)	2624
BssSI	CACGAG	1 cut(s)	3731
Bst1107I	GTATAC	1 cut(s)	2624
Bst2BI	CACGAG	1 cut(s)	3731
Bst2UI	CCWGG	7 cut(s)	274, 900, 1913, 2060, 2240, 2352, 3601
Bst4CI	ACNGT	7 cut(s)	397, 473, 1449, 1633, 1979, 2802, 3368
Bst6I	CTCTTC	4 cut(s)	342, 1800, 1951, 1991
BstAFI	CTTAAG	1 cut(s)	2006
BstBI	TTCGAA	1 cut(s)	2113
BstDSI	CCRYGG	2 cut(s)	421, 1506
BstEII	GGTNACC	1 cut(s)	1172
BstENI	CCTNNNNNAGG	3 cut(s)	823, 2355, 2448
BstFNI	CGCG	3 cut(s)	423, 630, 2262
BstH2I	RGCGCY	3 cut(s)	52, 415, 2149
BstHHI	GCGC	6 cut(s)	51, 414, 420, 630, 1966, 2148
BstKTI	GATC	9 cut(s)	190, 196, 246, 919, 1087, 2499, 2559, 3160, 3190
BstMBI	GATC	9 cut(s)	187, 193, 243, 916, 1084, 2496, 2556, 3157, 3187
BstMWI	GCNNNNNNNGC	4 cut(s)	420, 1760, 3087, 3554
BstNI	CCWGG	7 cut(s)	274, 900, 1913, 2060, 2240, 2352, 3601
BstNSI	RCATGY	3 cut(s)	710, 2481, 3453
BstPAI	GACNNNNGTC	1 cut(s)	3770
BstPI	GGTNACC	1 cut(s)	1172
BstSFI	CTRYAG	2 cut(s)	1654, 3129
BstSLI	GKGCMC	1 cut(s)	1756
BstUI	CGCG	3 cut(s)	423, 630, 2262
BstV1I	GCAGC	8 cut(s)	760, 1685, 1885, 1907, 2291, 2461, 3574, 3601
BstV2I	GAAGAC	4 cut(s)	474, 555, 695, 2354
BstXI	CCANNNNNNTGG	1 cut(s)	3712
BstZ17I	GTATAC	1 cut(s)	2624
Bsu36I	CCTNAGG	1 cut(s)	2628
BsuRI	GGCC	9 cut(s)	222, 272, 365, 723, 969, 1504, 2884, 3048, 3204
BtgI	CCRYGG	2 cut(s)	421, 1506
BtgZI	GCGATG	1 cut(s)	516
BtrI	CACGTC	2 cut(s)	8, 3296
BtsI	GCAGTG	2 cut(s)	1356, 1477
BtsIMutI	CAGTG	6 cut(s)	478, 1356, 1477, 1975, 3278, 3364
CaiI	CAGNNNCTG	2 cut(s)	1355, 3236
CciI	TCATGA	2 cut(s)	2446, 2892
CfoI	GCGC	6 cut(s)	51, 414, 420, 630, 1966, 2148
Cfr10I	RCCGGY	1 cut(s)	3044
Cfr13I	GGNCC	5 cut(s)	270, 425, 1503, 2870, 3047
Cfr42I	CCGCGG	1 cut(s)	424
Cfr9I	CCCGGG	1 cut(s)	124
CseI	GACGC	2 cut(s)	2480, 2591
CsiI	ACCWGGT	1 cut(s)	2350
CspCI	CAANNNNNGTGG	8 cut(s)	682, 717, 1131, 1166, 1219, 1254, 2184, 2219
DpnI	GATC	9 cut(s)	189, 195, 245, 918, 1086, 2498, 2558, 3159, 3189
DpnII	GATC	9 cut(s)	187, 193, 243, 916, 1084, 2496, 2556, 3157, 3187
DraI	TTTAAA	1 cut(s)	2385
DraIII	CACNNNGTG	1 cut(s)	1981
DrdI	GACNNNNNNGTC	2 cut(s)	2877, 3226
DriI	GACNNNNNGTC	1 cut(s)	2804
DseDI	GACNNNNNNGTC	2 cut(s)	2877, 3226
EaeI	YGGCCR	3 cut(s)	220, 363, 967
Eam1104I	CTCTTC	4 cut(s)	342, 1800, 1951, 1991
Eam1105I	GACNNNNNGTC	1 cut(s)	2804
EarI	CTCTTC	4 cut(s)	342, 1800, 1951, 1991
EciI	GGCGGA	1 cut(s)	461
Ecl136II	GAGCTC	1 cut(s)	2707
Eco24I	GRGCYC	1 cut(s)	2709
Eco31I	GGTCTC	3 cut(s)	386, 2017, 2812
Eco47I	GGWCC	2 cut(s)	425, 2870
Eco47III	AGCGCT	2 cut(s)	413, 2147
Eco53kI	GAGCTC	1 cut(s)	2707
Eco57I	CTGAAG	5 cut(s)	311, 1932, 3294, 3663, 3789
Eco81I	CCTNAGG	1 cut(s)	2628
Eco88I	CYCGRG	3 cut(s)	124, 440, 863
Eco91I	GGTNACC	1 cut(s)	1172
EcoICRI	GAGCTC	1 cut(s)	2707
EcoNI	CCTNNNNNAGG	3 cut(s)	823, 2355, 2448
EcoO109I	RGGNCCY	2 cut(s)	270, 2870
EcoO65I	GGTNACC	1 cut(s)	1172
EcoRI	GAATTC	1 cut(s)	1610
EcoRII	CCWGG	7 cut(s)	272, 898, 1911, 2058, 2238, 2350, 3599
EcoT38I	GRGCYC	1 cut(s)	2709
FalI	AAGNNNNNCTT	6 cut(s)	2387, 2419, 2648, 2680, 2953, 2985
FaqI	GGGAC	6 cut(s)	615, 1966, 2883, 2958, 2975, 3313
FauNDI	CATATG	3 cut(s)	1677, 3444, 3619
FbaI	TGATCA	1 cut(s)	2556
FblI	GTMKAC	2 cut(s)	2623, 3737
FriOI	GRGCYC	1 cut(s)	2709
FspI	TGCGCA	1 cut(s)	1965
GlaI	GCGC	6 cut(s)	50, 413, 419, 629, 1965, 2147
GsaI	CCCAGC	1 cut(s)	123
GsuI	CTGGAG	3 cut(s)	590, 1934, 2222
HaeII	RGCGCY	3 cut(s)	52, 415, 2149
HaeIII	GGCC	9 cut(s)	222, 272, 365, 723, 969, 1504, 2884, 3048, 3204
HapII	CCGG	8 cut(s)	125, 498, 639, 1734, 2135, 3045, 3513, 3550
HgaI	GACGC	2 cut(s)	2480, 2591
HhaI	GCGC	6 cut(s)	51, 414, 420, 630, 1966, 2148
Hin6I	GCGC	6 cut(s)	49, 412, 418, 628, 1964, 2146
HinP1I	GCGC	6 cut(s)	49, 412, 418, 628, 1964, 2146
HincII	GTYRAC	7 cut(s)	40, 2305, 2374, 3069, 3541, 3673, 3723
HindII	GTYRAC	7 cut(s)	40, 2305, 2374, 3069, 3541, 3673, 3723
HindIII	AAGCTT	1 cut(s)	3028
HpaI	GTTAAC	1 cut(s)	40
HpaII	CCGG	8 cut(s)	125, 498, 639, 1734, 2135, 3045, 3513, 3550
HphI	GGTGA	3 cut(s)	824, 1115, 3034
Hpy99I	CGWCG	6 cut(s)	12, 15, 338, 347, 1230, 2474
HpyAV	CCTTC	9 cut(s)	73, 162, 275, 1093, 1162, 2102, 2181, 2444, 3047
HpyCH4III	ACNGT	7 cut(s)	397, 473, 1449, 1633, 1979, 2802, 3368
HpyCH4IV	ACGT	4 cut(s)	7, 1264, 2644, 3295
HpyF10VI	GCNNNNNNNGC	4 cut(s)	420, 1760, 3087, 3554
HpySE526I	ACGT	4 cut(s)	7, 1264, 2644, 3295
HspAI	GCGC	6 cut(s)	49, 412, 418, 628, 1964, 2146
KflI	GGGWCCC	1 cut(s)	2870
Kpn2I	TCCGGA	1 cut(s)	2134
Ksp22I	TGATCA	1 cut(s)	2556
KspAI	GTTAAC	1 cut(s)	40
KspI	CCGCGG	1 cut(s)	424
Kzo9I	GATC	9 cut(s)	187, 193, 243, 916, 1084, 2496, 2556, 3157, 3187
LmnI	GCTCC	9 cut(s)	23, 146, 641, 1070, 1219, 1730, 2143, 2241, 3116
Lsp1109I	GCAGC	8 cut(s)	760, 1685, 1885, 1907, 2291, 2461, 3574, 3601
MabI	ACCWGGT	1 cut(s)	2350
MaeII	ACGT	4 cut(s)	7, 1264, 2644, 3295
MalI	GATC	9 cut(s)	189, 195, 245, 918, 1086, 2498, 2558, 3159, 3189
MbiI	CCGCTC	1 cut(s)	660
MboI	GATC	9 cut(s)	187, 193, 243, 916, 1084, 2496, 2556, 3157, 3187
MfeI	CAATTG	3 cut(s)	1967, 2571, 2847
MhlI	GDGCHC	2 cut(s)	1756, 2709
MlsI	TGGCCA	2 cut(s)	365, 969
MluNI	TGGCCA	2 cut(s)	365, 969
MlyI	GAGTC	9 cut(s)	597, 1937, 2051, 2510, 2741, 3341, 3502, 3743, 3752
MmeI	TCCRAC	1 cut(s)	3439
Mox20I	TGGCCA	2 cut(s)	365, 969
MroI	TCCGGA	1 cut(s)	2134
MroXI	GAANNNNTTC	2 cut(s)	2965, 3379
MscI	TGGCCA	2 cut(s)	365, 969
Msp20I	TGGCCA	2 cut(s)	365, 969
MspA1I	CMGCKG	2 cut(s)	423, 1898
MspCI	CTTAAG	1 cut(s)	2006
MspI	CCGG	8 cut(s)	125, 498, 639, 1734, 2135, 3045, 3513, 3550
MunI	CAATTG	3 cut(s)	1967, 2571, 2847
Mva1269I	GAATGC	1 cut(s)	2197
MvaI	CCWGG	7 cut(s)	274, 900, 1913, 2060, 2240, 2352, 3601
MvnI	CGCG	3 cut(s)	423, 630, 2262
MwoI	GCNNNNNNNGC	4 cut(s)	420, 1760, 3087, 3554
NciI	CCSGG	5 cut(s)	125, 126, 1735, 3513, 3550
NdeI	CATATG	3 cut(s)	1677, 3444, 3619
NdeII	GATC	9 cut(s)	187, 193, 243, 916, 1084, 2496, 2556, 3157, 3187
NheI	GCTAGC	2 cut(s)	2168, 3400
NlaIV	GGNNCC	6 cut(s)	130, 637, 1599, 1732, 2871, 2872
NmuCI	GTSAC	6 cut(s)	3, 1351, 1981, 2566, 2812, 3487
NsbI	TGCGCA	1 cut(s)	1965
NspI	RCATGY	3 cut(s)	710, 2481, 3453
NspV	TTCGAA	1 cut(s)	2113
PaeI	GCATGC	1 cut(s)	3453
PagI	TCATGA	2 cut(s)	2446, 2892
PciI	ACATGT	1 cut(s)	706
PcsI	WCGNNNNNNNCGW	2 cut(s)	339, 342
PctI	GAATGC	1 cut(s)	2197
PdmI	GAANNNNTTC	2 cut(s)	2965, 3379
PfeI	GAWTC	9 cut(s)	385, 494, 739, 1670, 1972, 2085, 2321, 2720, 2966
PflMI	CCANNNNNTGG	2 cut(s)	229, 1850
PfoI	TCCNGGA	1 cut(s)	2238
PleI	GAGTC	9 cut(s)	597, 1937, 2050, 2509, 2740, 3340, 3502, 3742, 3752
PpsI	GAGTC	9 cut(s)	597, 1937, 2050, 2509, 2740, 3340, 3502, 3742, 3752
PpuMI	RGGWCCY	1 cut(s)	2870
PscI	ACATGT	1 cut(s)	706
PshAI	GACNNNNGTC	1 cut(s)	3770
PshBI	ATTAAT	1 cut(s)	2273
Psp124BI	GAGCTC	1 cut(s)	2709
Psp5II	RGGWCCY	1 cut(s)	2870
Psp6I	CCWGG	7 cut(s)	272, 898, 1911, 2058, 2238, 2350, 3599
PspEI	GGTNACC	1 cut(s)	1172
PspFI	CCCAGC	1 cut(s)	119
PspGI	CCWGG	7 cut(s)	272, 898, 1911, 2058, 2238, 2350, 3599
PspN4I	GGNNCC	6 cut(s)	130, 637, 1599, 1732, 2871, 2872
PspPI	GGNCC	5 cut(s)	270, 425, 1503, 2870, 3047
PspPPI	RGGWCCY	1 cut(s)	2870
PstI	CTGCAG	1 cut(s)	3133
PstNI	CAGNNNCTG	2 cut(s)	1355, 3236
PvuII	CAGCTG	1 cut(s)	1898
SacI	GAGCTC	1 cut(s)	2709
SacII	CCGCGG	1 cut(s)	424
Sau3AI	GATC	9 cut(s)	187, 193, 243, 916, 1084, 2496, 2556, 3157, 3187
Sau96I	GGNCC	5 cut(s)	270, 425, 1503, 2870, 3047
ScaI	AGTACT	1 cut(s)	1557
SchI	GAGTC	9 cut(s)	597, 1937, 2051, 2510, 2741, 3341, 3502, 3743, 3752
SduI	GDGCHC	2 cut(s)	1756, 2709
SexAI	ACCWGGT	1 cut(s)	2350
SfcI	CTRYAG	2 cut(s)	1654, 3129
Sfr303I	CCGCGG	1 cut(s)	424
SfuI	TTCGAA	1 cut(s)	2113
SgrBI	CCGCGG	1 cut(s)	424
SinI	GGWCC	2 cut(s)	425, 2870
SmaI	CCCGGG	1 cut(s)	126
SmlI	CTYRAG	4 cut(s)	725, 2006, 2071, 3794
SmoI	CTYRAG	4 cut(s)	725, 2006, 2071, 3794
SpeI	ACTAGT	3 cut(s)	535, 1513, 1582
SphI	GCATGC	1 cut(s)	3453
SspI	AATATT	2 cut(s)	808, 2686
SstI	GAGCTC	1 cut(s)	2709
TaaI	ACNGT	7 cut(s)	397, 473, 1449, 1633, 1979, 2802, 3368
TaiI	ACGT	4 cut(s)	10, 1267, 2647, 3298
TaqI	TCGA	9 cut(s)	13, 378, 1890, 2113, 2326, 2434, 2499, 3370, 3750
TatI	WGTACW	3 cut(s)	252, 1555, 3209
TauI	GCSGC	5 cut(s)	423, 633, 636, 2225, 3593
TfiI	GAWTC	9 cut(s)	385, 494, 739, 1670, 1972, 2085, 2321, 2720, 2966
TscAI	CASTG	6 cut(s)	478, 1356, 1477, 1982, 3285, 3371
TseFI	GTSAC	6 cut(s)	3, 1351, 1981, 2566, 2812, 3487
TseI	GCWGC	8 cut(s)	773, 1698, 1895, 1898, 2279, 2474, 3587, 3614
Tsp45I	GTSAC	6 cut(s)	3, 1351, 1981, 2566, 2812, 3487
TspGWI	ACGGA	2 cut(s)	36, 664
TspMI	CCCGGG	1 cut(s)	124
TspRI	CASTG	6 cut(s)	478, 1356, 1477, 1982, 3285, 3371
Van91I	CCANNNNNTGG	2 cut(s)	229, 1850
Vha464I	CTTAAG	1 cut(s)	2006
VneI	GTGCAC	1 cut(s)	1752
VpaK11BI	GGWCC	2 cut(s)	425, 2870
VspI	ATTAAT	1 cut(s)	2273
XagI	CCTNNNNNAGG	3 cut(s)	823, 2355, 2448
XapI	RAATTY	6 cut(s)	670, 1369, 1610, 1829, 2108, 3605
XbaI	TCTAGA	2 cut(s)	1801, 1903
XceI	RCATGY	3 cut(s)	710, 2481, 3453
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3461
XmaI	CCCGGG	1 cut(s)	124
XmiI	GTMKAC	2 cut(s)	2623, 3737
XmnI	GAANNNNTTC	2 cut(s)	2965, 3379
ZrmI	AGTACT	1 cut(s)	1557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.