Component of the post-replicative DNA mismatch repair system (MMR)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G02070 AT4G02070 |
| fragaria_vesca | FvH4_5g39410 FvH4_5g39410 FvH4_5g39410 FvH4_5g39410 |
| malus_domestica | MD01G1013000.v1.1 MD03G1296000.v1.1 MD11G1315400.v1.1 |
| prunus_persica | Prupe.8G271300_v2.0.a1 Prupe.8G271300_v2.0.a1 Prupe.8G271300_v2.0.a1 Prupe.8G271300_v2.0.a1 |
| pyrus_communis | pycom03g23420 pycom11g27540 |
| rosa_laevigata | RLG00000000552 |
| rosa_multiflora | Rmu_sc0022843.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00218800 |
| rosa_samantha | Rh7CG517400 Rh7DG485900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 2829 |
| AatII | GACGTC | 1 cut(s) | 3257 |
| Acc36I | ACCTGC | 1 cut(s) | 1483 |
| AccB1I | GGYRCC | 2 cut(s) | 2252, 3131 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1802 |
| AccBSI | CCGCTC | 1 cut(s) | 627 |
| AccII | CGCG | 4 cut(s) | 29, 597, 2214, 3465 |
| AclWI | GGATC | 5 cut(s) | 218, 848, 860, 861, 3122 |
| AcoI | YGGCCR | 2 cut(s) | 224, 916 |
| AcsI | RAATTY | 6 cut(s) | 325, 341, 1321, 1562, 1781, 3557 |
| AcuI | CTGAAG | 5 cut(s) | 1630, 1884, 3246, 3615, 3741 |
| AcyI | GRCGYC | 2 cut(s) | 414, 3254 |
| AdeI | CACNNNGTG | 1 cut(s) | 1933 |
| AfeI | AGCGCT | 1 cut(s) | 380 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 424, 1067, 1802, 1944, 2309, 2402, 2832, 3007, 3008 |
| AflII | CTTAAG | 2 cut(s) | 1958, 2474 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2756 |
| AhlI | ACTAGT | 4 cut(s) | 281, 1465, 1534, 3677 |
| AjiI | CACGTC | 1 cut(s) | 3248 |
| AjnI | CCWGG | 8 cut(s) | 239, 847, 1685, 1752, 2010, 2190, 2302, 3551 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 2597, 2629, 3150, 3182 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 3288, 3320 |
| Alw21I | GWGCWC | 5 cut(s) | 222, 734, 1708, 1729, 2661 |
| Alw26I | GTCTC | 9 cut(s) | 336, 527, 1754, 1887, 1969, 2026, 2460, 2743, 2764 |
| Alw44I | GTGCAC | 1 cut(s) | 1704 |
| AlwI | GGATC | 5 cut(s) | 218, 848, 860, 861, 3122 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1307, 3188 |
| Aor51HI | AGCGCT | 1 cut(s) | 380 |
| AoxI | GGCC | 8 cut(s) | 224, 237, 688, 916, 1454, 2834, 2998, 3154 |
| ApaLI | GTGCAC | 1 cut(s) | 1704 |
| ApeKI | GCWGC | 7 cut(s) | 49, 1650, 1847, 1850, 2174, 3539, 3566 |
| ApoI | RAATTY | 6 cut(s) | 325, 341, 1321, 1562, 1781, 3557 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 183, 215, 240, 272 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 2917, 3288, 3331 |
| AspLEI | GCGC | 5 cut(s) | 29, 54, 381, 387, 597 |
| AspS9I | GGNCC | 4 cut(s) | 237, 392, 2822, 2999 |
| AsuC2I | CCSGG | 3 cut(s) | 419, 827, 3502 |
| AsuHPI | GGTGA | 3 cut(s) | 320, 773, 3646 |
| AsuII | TTCGAA | 3 cut(s) | 999, 2065, 3561 |
| AsuNHI | GCTAGC | 1 cut(s) | 2120 |
| AvaII | GGWCC | 2 cut(s) | 392, 2822 |
| AxyI | CCTNAGG | 2 cut(s) | 1494, 2580 |
| BaeGI | GKGCMC | 2 cut(s) | 579, 1708 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 1967, 2000, 2925, 2958 |
| BalI | TGGCCA | 1 cut(s) | 918 |
| BamHI | GGATCC | 1 cut(s) | 853 |
| BanI | GGYRCC | 2 cut(s) | 2252, 3131 |
| BanII | GRGCYC | 1 cut(s) | 2661 |
| BauI | CACGAG | 1 cut(s) | 2397 |
| BbsI | GAAGAC | 3 cut(s) | 284, 534, 662 |
| Bbv12I | GWGCWC | 5 cut(s) | 222, 734, 1708, 1729, 2661 |
| BbvCI | CCTCAGC | 1 cut(s) | 1514 |
| BbvI | GCAGC | 7 cut(s) | 61, 1637, 1834, 1837, 2161, 3526, 3553 |
| BceAI | ACGGC | 5 cut(s) | 40, 202, 1596, 2003, 3341 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 989, 1023, 1832, 1866, 2156, 2190 |
| BciT130I | CCWGG | 8 cut(s) | 241, 849, 1687, 1754, 2012, 2192, 2304, 3553 |
| BclI | TGATCA | 1 cut(s) | 39 |
| BcnI | CCSGG | 3 cut(s) | 419, 827, 3502 |
| BcoDI | GTCTC | 9 cut(s) | 336, 527, 1754, 1887, 1969, 2026, 2460, 2743, 2764 |
| BcuI | ACTAGT | 4 cut(s) | 281, 1465, 1534, 3677 |
| BfmI | CTRYAG | 2 cut(s) | 1476, 1606 |
| BfoI | RGCGCY | 2 cut(s) | 55, 382 |
| BfrI | CTTAAG | 2 cut(s) | 1958, 2474 |
| BfuAI | ACCTGC | 1 cut(s) | 1483 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 422 |
| BmcAI | AGTACT | 1 cut(s) | 1509 |
| Bme18I | GGWCC | 2 cut(s) | 392, 2822 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2756 |
| BmgBI | CACGTC | 1 cut(s) | 3248 |
| BmgT120I | GGNCC | 4 cut(s) | 237, 392, 2822, 2999 |
| BmiI | GGNNCC | 7 cut(s) | 607, 855, 1684, 2254, 2823, 2824, 3133 |
| BmrI | ACTGGG | 2 cut(s) | 162, 3055 |
| BmtI | GCTAGC | 1 cut(s) | 2124 |
| BmuI | ACTGGG | 2 cut(s) | 162, 3055 |
| BoxI | GACNNNNGTC | 1 cut(s) | 453 |
| BpiI | GAAGAC | 3 cut(s) | 284, 534, 662 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1178, 1210, 2563, 2595 |
| BpmI | CTGGAG | 3 cut(s) | 112, 356, 2174 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1514, 1769 |
| Bpu14I | TTCGAA | 3 cut(s) | 999, 2065, 3561 |
| BpuEI | CTTGAG | 3 cut(s) | 677, 1886, 2008 |
| BpuMI | CCSGG | 3 cut(s) | 419, 827, 3502 |
| BsaHI | GRCGYC | 2 cut(s) | 414, 3254 |
| BsaI | GGTCTC | 2 cut(s) | 1969, 2764 |
| BsaJI | CCNNGG | 6 cut(s) | 388, 417, 811, 848, 1686, 3552 |
| BsaWI | WCCGGW | 1 cut(s) | 608 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 424, 1067, 1802, 1944, 2309, 2402, 2832, 3007, 3008 |
| Bse118I | RCCGGY | 1 cut(s) | 226 |
| Bse1I | ACTGG | 6 cut(s) | 168, 1113, 2781, 2974, 3001, 3061 |
| Bse21I | CCTNAGG | 2 cut(s) | 1494, 2580 |
| Bse3DI | GCAATG | 3 cut(s) | 932, 1763, 3276 |
| BseBI | CCWGG | 8 cut(s) | 241, 849, 1687, 1754, 2012, 2192, 2304, 3553 |
| BseDI | CCNNGG | 6 cut(s) | 388, 417, 811, 848, 1686, 3552 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 424, 1067, 1802, 1944, 2309, 2402, 2832, 3007, 3008 |
| BseMI | GCAATG | 3 cut(s) | 932, 1763, 3276 |
| BseNI | ACTGG | 6 cut(s) | 168, 1113, 2781, 2974, 3001, 3061 |
| BseRI | GAGGAG | 4 cut(s) | 449, 452, 533, 536 |
| BseSI | GKGCMC | 2 cut(s) | 579, 1708 |
| BseXI | GCAGC | 7 cut(s) | 61, 1637, 1834, 1837, 2161, 3526, 3553 |
| BsgI | GTGCAG | 3 cut(s) | 1248, 1441, 1635 |
| Bsh1236I | CGCG | 4 cut(s) | 29, 597, 2214, 3465 |
| BshFI | GGCC | 8 cut(s) | 226, 239, 690, 918, 1456, 2836, 3000, 3156 |
| BshNI | GGYRCC | 2 cut(s) | 2252, 3131 |
| BsiHKAI | GWGCWC | 5 cut(s) | 222, 734, 1708, 1729, 2661 |
| BsiSI | CCGG | 6 cut(s) | 227, 419, 474, 609, 826, 3502 |
| BslFI | GGGAC | 6 cut(s) | 16, 1918, 2835, 2910, 2927, 3265 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 424, 1067, 1802, 1944, 2309, 2402, 2832, 3007, 3008 |
| BsmAI | GTCTC | 9 cut(s) | 336, 527, 1754, 1887, 1969, 2026, 2460, 2743, 2764 |
| BsmBI | CGTCTC | 1 cut(s) | 2026 |
| BsmFI | GGGAC | 6 cut(s) | 16, 1918, 2835, 2910, 2927, 3265 |
| BsmI | GAATGC | 1 cut(s) | 2149 |
| BsnI | GGCC | 8 cut(s) | 226, 239, 690, 918, 1456, 2836, 3000, 3156 |
| Bso31I | GGTCTC | 2 cut(s) | 1969, 2764 |
| Bsp119I | TTCGAA | 3 cut(s) | 999, 2065, 3561 |
| Bsp1286I | GDGCHC | 6 cut(s) | 222, 579, 734, 1708, 1729, 2661 |
| BspANI | GGCC | 8 cut(s) | 226, 239, 690, 918, 1456, 2836, 3000, 3156 |
| BspFNI | CGCG | 4 cut(s) | 29, 597, 2214, 3465 |
| BspHI | TCATGA | 4 cut(s) | 457, 2463, 2844, 3682 |
| BspLI | GGNNCC | 7 cut(s) | 607, 855, 1684, 2254, 2823, 2824, 3133 |
| BspMAI | CTGCAG | 1 cut(s) | 1480 |
| BspMI | ACCTGC | 1 cut(s) | 1483 |
| BspOI | GCTAGC | 1 cut(s) | 2124 |
| BspPI | GGATC | 5 cut(s) | 218, 848, 860, 861, 3122 |
| BspT104I | TTCGAA | 3 cut(s) | 999, 2065, 3561 |
| BspT107I | GGYRCC | 2 cut(s) | 2252, 3131 |
| BspTI | CTTAAG | 2 cut(s) | 1958, 2474 |
| BspTNI | GGTCTC | 2 cut(s) | 1969, 2764 |
| BsrBI | CCGCTC | 1 cut(s) | 627 |
| BsrDI | GCAATG | 3 cut(s) | 932, 1763, 3276 |
| BsrFI | RCCGGY | 1 cut(s) | 226 |
| BsrI | ACTGG | 6 cut(s) | 168, 1113, 2781, 2974, 3001, 3061 |
| BssAI | RCCGGY | 1 cut(s) | 226 |
| BssECI | CCNNGG | 6 cut(s) | 388, 417, 811, 848, 1686, 3552 |
| BssNI | GRCGYC | 2 cut(s) | 414, 3254 |
| BssSI | CACGAG | 1 cut(s) | 2397 |
| BssT1I | CCWWGG | 1 cut(s) | 811 |
| Bst2BI | CACGAG | 1 cut(s) | 2397 |
| Bst2UI | CCWGG | 8 cut(s) | 241, 849, 1687, 1754, 2012, 2192, 2304, 3553 |
| Bst4CI | ACNGT | 7 cut(s) | 364, 749, 1401, 1585, 1931, 3320, 3664 |
| Bst6I | CTCTTC | 6 cut(s) | 186, 200, 1752, 1903, 1943, 2882 |
| BstACI | GRCGYC | 2 cut(s) | 414, 3254 |
| BstAFI | CTTAAG | 2 cut(s) | 1958, 2474 |
| BstBI | TTCGAA | 3 cut(s) | 999, 2065, 3561 |
| BstEII | GGTNACC | 1 cut(s) | 1124 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 2307, 2400 |
| BstFNI | CGCG | 4 cut(s) | 29, 597, 2214, 3465 |
| BstH2I | RGCGCY | 2 cut(s) | 55, 382 |
| BstHHI | GCGC | 5 cut(s) | 29, 54, 381, 387, 597 |
| BstMAI | GTCTC | 9 cut(s) | 336, 527, 1754, 1887, 1969, 2026, 2460, 2743, 2764 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 18, 236, 422, 603, 1650, 1712, 3039, 3506 |
| BstNI | CCWGG | 8 cut(s) | 241, 849, 1687, 1754, 2012, 2192, 2304, 3553 |
| BstNSI | RCATGY | 3 cut(s) | 787, 2433, 3405 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 453 |
| BstPI | GGTNACC | 1 cut(s) | 1124 |
| BstSFI | CTRYAG | 2 cut(s) | 1476, 1606 |
| BstSLI | GKGCMC | 2 cut(s) | 579, 1708 |
| BstUI | CGCG | 4 cut(s) | 29, 597, 2214, 3465 |
| BstV1I | GCAGC | 7 cut(s) | 61, 1637, 1834, 1837, 2161, 3526, 3553 |
| BstV2I | GAAGAC | 3 cut(s) | 284, 534, 662 |
| BstX2I | RGATCY | 2 cut(s) | 853, 3114 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3664 |
| BstYI | RGATCY | 2 cut(s) | 853, 3114 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1494, 2580 |
| BsuRI | GGCC | 8 cut(s) | 226, 239, 690, 918, 1456, 2836, 3000, 3156 |
| BtgZI | GCGATG | 1 cut(s) | 492 |
| BtrI | CACGTC | 1 cut(s) | 3248 |
| BtsI | GCAGTG | 2 cut(s) | 1308, 1429 |
| BtsIMutI | CAGTG | 7 cut(s) | 360, 1308, 1429, 1927, 2994, 3316, 3660 |
| BveI | ACCTGC | 1 cut(s) | 1483 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1307, 3188 |
| CciI | TCATGA | 4 cut(s) | 457, 2463, 2844, 3682 |
| CfoI | GCGC | 5 cut(s) | 29, 54, 381, 387, 597 |
| Cfr10I | RCCGGY | 1 cut(s) | 226 |
| Cfr13I | GGNCC | 4 cut(s) | 237, 392, 2822, 2999 |
| CseI | GACGC | 3 cut(s) | 18, 422, 2180 |
| CsiI | ACCWGGT | 1 cut(s) | 2302 |
| CspCI | CAANNNNNGTGG | 6 cut(s) | 649, 684, 1080, 1115, 1171, 1206 |
| DraIII | CACNNNGTG | 1 cut(s) | 1933 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2829 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2756 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2829 |
| EaeI | YGGCCR | 2 cut(s) | 224, 916 |
| Eam1104I | CTCTTC | 6 cut(s) | 186, 200, 1752, 1903, 1943, 2882 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2756 |
| EarI | CTCTTC | 6 cut(s) | 186, 200, 1752, 1903, 1943, 2882 |
| EciI | GGCGGA | 2 cut(s) | 446, 645 |
| Ecl136II | GAGCTC | 1 cut(s) | 2659 |
| Eco130I | CCWWGG | 1 cut(s) | 811 |
| Eco147I | AGGCCT | 1 cut(s) | 1456 |
| Eco24I | GRGCYC | 1 cut(s) | 2661 |
| Eco31I | GGTCTC | 2 cut(s) | 1969, 2764 |
| Eco47I | GGWCC | 2 cut(s) | 392, 2822 |
| Eco47III | AGCGCT | 1 cut(s) | 380 |
| Eco53kI | GAGCTC | 1 cut(s) | 2659 |
| Eco57I | CTGAAG | 5 cut(s) | 1630, 1884, 3246, 3615, 3741 |
| Eco81I | CCTNAGG | 2 cut(s) | 1494, 2580 |
| Eco91I | GGTNACC | 1 cut(s) | 1124 |
| EcoICRI | GAGCTC | 1 cut(s) | 2659 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 2307, 2400 |
| EcoO109I | RGGNCCY | 3 cut(s) | 237, 392, 2822 |
| EcoO65I | GGTNACC | 1 cut(s) | 1124 |
| EcoRI | GAATTC | 2 cut(s) | 1562, 3557 |
| EcoRII | CCWGG | 8 cut(s) | 239, 847, 1685, 1752, 2010, 2190, 2302, 3551 |
| EcoT14I | CCWWGG | 1 cut(s) | 811 |
| EcoT38I | GRGCYC | 1 cut(s) | 2661 |
| ErhI | CCWWGG | 1 cut(s) | 811 |
| Esp3I | CGTCTC | 1 cut(s) | 2026 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 2339, 2371, 2600, 2632, 2905, 2937 |
| FaqI | GGGAC | 6 cut(s) | 16, 1918, 2835, 2910, 2927, 3265 |
| FauI | CCCGC | 1 cut(s) | 54 |
| FauNDI | CATATG | 2 cut(s) | 3396, 3571 |
| FbaI | TGATCA | 1 cut(s) | 39 |
| FriOI | GRGCYC | 1 cut(s) | 2661 |
| GlaI | GCGC | 5 cut(s) | 28, 53, 380, 386, 596 |
| GsuI | CTGGAG | 3 cut(s) | 112, 356, 2174 |
| HaeII | RGCGCY | 2 cut(s) | 55, 382 |
| HaeIII | GGCC | 8 cut(s) | 226, 239, 690, 918, 1456, 2836, 3000, 3156 |
| HapII | CCGG | 6 cut(s) | 227, 419, 474, 609, 826, 3502 |
| HgaI | GACGC | 3 cut(s) | 18, 422, 2180 |
| HhaI | GCGC | 5 cut(s) | 29, 54, 381, 387, 597 |
| Hin1I | GRCGYC | 2 cut(s) | 414, 3254 |
| Hin6I | GCGC | 5 cut(s) | 27, 52, 379, 385, 595 |
| HinP1I | GCGC | 5 cut(s) | 27, 52, 379, 385, 595 |
| HincII | GTYRAC | 7 cut(s) | 745, 2326, 3021, 3258, 3459, 3493, 3675 |
| HindII | GTYRAC | 7 cut(s) | 745, 2326, 3021, 3258, 3459, 3493, 3675 |
| HindIII | AAGCTT | 1 cut(s) | 2980 |
| HpaI | GTTAAC | 1 cut(s) | 745 |
| HpaII | CCGG | 6 cut(s) | 227, 419, 474, 609, 826, 3502 |
| HphI | GGTGA | 3 cut(s) | 320, 773, 3646 |
| Hpy99I | CGWCG | 8 cut(s) | 18, 178, 203, 305, 406, 416, 1182, 3500 |
| HpyCH4III | ACNGT | 7 cut(s) | 364, 749, 1401, 1585, 1931, 3320, 3664 |
| HpyCH4IV | ACGT | 6 cut(s) | 1216, 2517, 2596, 3247, 3254, 3495 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 18, 236, 422, 603, 1650, 1712, 3039, 3506 |
| HpySE526I | ACGT | 6 cut(s) | 1216, 2517, 2596, 3247, 3254, 3495 |
| Hsp92I | GRCGYC | 2 cut(s) | 414, 3254 |
| HspAI | GCGC | 5 cut(s) | 27, 52, 379, 385, 595 |
| KflI | GGGWCCC | 1 cut(s) | 2822 |
| KroI | GCCGGC | 1 cut(s) | 226 |
| KroNI | GCCGGC | 1 cut(s) | 228 |
| Ksp22I | TGATCA | 1 cut(s) | 39 |
| KspAI | GTTAAC | 1 cut(s) | 745 |
| LmnI | GCTCC | 9 cut(s) | 18, 611, 1019, 1682, 2095, 2193, 3068, 3175, 3586 |
| Lsp1109I | GCAGC | 7 cut(s) | 61, 1637, 1834, 1837, 2161, 3526, 3553 |
| MabI | ACCWGGT | 1 cut(s) | 2302 |
| MaeII | ACGT | 6 cut(s) | 1216, 2517, 2596, 3247, 3254, 3495 |
| MbiI | CCGCTC | 1 cut(s) | 627 |
| MfeI | CAATTG | 4 cut(s) | 1919, 2523, 2753, 2799 |
| MflI | RGATCY | 2 cut(s) | 853, 3114 |
| MhlI | GDGCHC | 6 cut(s) | 222, 579, 734, 1708, 1729, 2661 |
| MlsI | TGGCCA | 1 cut(s) | 918 |
| MluNI | TGGCCA | 1 cut(s) | 918 |
| MmeI | TCCRAC | 2 cut(s) | 197, 3391 |
| Mox20I | TGGCCA | 1 cut(s) | 918 |
| MroNI | GCCGGC | 1 cut(s) | 226 |
| MroXI | GAANNNNTTC | 3 cut(s) | 2917, 3288, 3331 |
| MscI | TGGCCA | 1 cut(s) | 918 |
| MslI | CAYNNNNRTG | 1 cut(s) | 462 |
| Msp20I | TGGCCA | 1 cut(s) | 918 |
| MspA1I | CMGCKG | 1 cut(s) | 1650 |
| MspCI | CTTAAG | 2 cut(s) | 1958, 2474 |
| MspI | CCGG | 6 cut(s) | 227, 419, 474, 609, 826, 3502 |
| MunI | CAATTG | 4 cut(s) | 1919, 2523, 2753, 2799 |
| Mva1269I | GAATGC | 1 cut(s) | 2149 |
| MvaI | CCWGG | 8 cut(s) | 241, 849, 1687, 1754, 2012, 2192, 2304, 3553 |
| MvnI | CGCG | 4 cut(s) | 29, 597, 2214, 3465 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 18, 236, 422, 603, 1650, 1712, 3039, 3506 |
| NaeI | GCCGGC | 1 cut(s) | 228 |
| NciI | CCSGG | 3 cut(s) | 419, 827, 3502 |
| NdeI | CATATG | 2 cut(s) | 3396, 3571 |
| NgoMIV | GCCGGC | 1 cut(s) | 226 |
| NheI | GCTAGC | 1 cut(s) | 2120 |
| NlaIV | GGNNCC | 7 cut(s) | 607, 855, 1684, 2254, 2823, 2824, 3133 |
| NmeAIII | GCCGAG | 3 cut(s) | 413, 1366, 3431 |
| NmuCI | GTSAC | 9 cut(s) | 6, 284, 308, 563, 1303, 1933, 2219, 2764, 3439 |
| NspI | RCATGY | 3 cut(s) | 787, 2433, 3405 |
| NspV | TTCGAA | 3 cut(s) | 999, 2065, 3561 |
| PaeI | GCATGC | 2 cut(s) | 787, 3405 |
| PagI | TCATGA | 4 cut(s) | 457, 2463, 2844, 3682 |
| PceI | AGGCCT | 1 cut(s) | 1456 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 309 |
| PctI | GAATGC | 1 cut(s) | 2149 |
| PdiI | GCCGGC | 1 cut(s) | 228 |
| PdmI | GAANNNNTTC | 3 cut(s) | 2917, 3288, 3331 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1802 |
| PfoI | TCCNGGA | 2 cut(s) | 1752, 2190 |
| PpuMI | RGGWCCY | 2 cut(s) | 392, 2822 |
| PshAI | GACNNNNGTC | 1 cut(s) | 453 |
| Psp124BI | GAGCTC | 1 cut(s) | 2661 |
| Psp5II | RGGWCCY | 2 cut(s) | 392, 2822 |
| Psp6I | CCWGG | 8 cut(s) | 239, 847, 1685, 1752, 2010, 2190, 2302, 3551 |
| PspEI | GGTNACC | 1 cut(s) | 1124 |
| PspGI | CCWGG | 8 cut(s) | 239, 847, 1685, 1752, 2010, 2190, 2302, 3551 |
| PspN4I | GGNNCC | 7 cut(s) | 607, 855, 1684, 2254, 2823, 2824, 3133 |
| PspPI | GGNCC | 4 cut(s) | 237, 392, 2822, 2999 |
| PspPPI | RGGWCCY | 2 cut(s) | 392, 2822 |
| PstI | CTGCAG | 1 cut(s) | 1480 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1307, 3188 |
| PsuI | RGATCY | 2 cut(s) | 853, 3114 |
| PvuII | CAGCTG | 1 cut(s) | 1650 |
| RseI | CAYNNNNRTG | 1 cut(s) | 462 |
| SacI | GAGCTC | 1 cut(s) | 2661 |
| Sau96I | GGNCC | 4 cut(s) | 237, 392, 2822, 2999 |
| ScaI | AGTACT | 1 cut(s) | 1509 |
| SduI | GDGCHC | 6 cut(s) | 222, 579, 734, 1708, 1729, 2661 |
| SexAI | ACCWGGT | 1 cut(s) | 2302 |
| SfcI | CTRYAG | 2 cut(s) | 1476, 1606 |
| SfuI | TTCGAA | 3 cut(s) | 999, 2065, 3561 |
| SinI | GGWCC | 2 cut(s) | 392, 2822 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 462 |
| SmlI | CTYRAG | 6 cut(s) | 692, 1865, 1958, 2023, 2474, 3746 |
| SmoI | CTYRAG | 6 cut(s) | 692, 1865, 1958, 2023, 2474, 3746 |
| SpeI | ACTAGT | 4 cut(s) | 281, 1465, 1534, 3677 |
| SphI | GCATGC | 2 cut(s) | 787, 3405 |
| SseBI | AGGCCT | 1 cut(s) | 1456 |
| SspI | AATATT | 1 cut(s) | 2638 |
| SstI | GAGCTC | 1 cut(s) | 2661 |
| StuI | AGGCCT | 1 cut(s) | 1456 |
| StyI | CCWWGG | 1 cut(s) | 811 |
| TaaI | ACNGT | 7 cut(s) | 364, 749, 1401, 1585, 1931, 3320, 3664 |
| TaiI | ACGT | 6 cut(s) | 1219, 2520, 2599, 3250, 3257, 3498 |
| TaqI | TCGA | 9 cut(s) | 161, 345, 999, 1842, 2065, 2409, 2451, 3322, 3561 |
| TatI | WGTACW | 3 cut(s) | 1507, 3161, 3526 |
| TauI | GCSGC | 5 cut(s) | 600, 603, 606, 630, 3545 |
| TscAI | CASTG | 7 cut(s) | 367, 1308, 1429, 1934, 3001, 3323, 3667 |
| TseFI | GTSAC | 9 cut(s) | 6, 284, 308, 563, 1303, 1933, 2219, 2764, 3439 |
| TseI | GCWGC | 7 cut(s) | 49, 1650, 1847, 1850, 2174, 3539, 3566 |
| Tsp45I | GTSAC | 9 cut(s) | 6, 284, 308, 563, 1303, 1933, 2219, 2764, 3439 |
| TspGWI | ACGGA | 2 cut(s) | 794, 3188 |
| TspRI | CASTG | 7 cut(s) | 367, 1308, 1429, 1934, 3001, 3323, 3667 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1802 |
| Vha464I | CTTAAG | 2 cut(s) | 1958, 2474 |
| VneI | GTGCAC | 1 cut(s) | 1704 |
| VpaK11BI | GGWCC | 2 cut(s) | 392, 2822 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 2307, 2400 |
| XapI | RAATTY | 6 cut(s) | 325, 341, 1321, 1562, 1781, 3557 |
| XbaI | TCTAGA | 1 cut(s) | 1855 |
| XceI | RCATGY | 3 cut(s) | 787, 2433, 3405 |
| XmnI | GAANNNNTTC | 3 cut(s) | 2917, 3288, 3331 |
| ZraI | GACGTC | 1 cut(s) | 3255 |
| ZrmI | AGTACT | 1 cut(s) | 1509 |