AT4G02360

Protein of unknown function, DUF538

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0015829
Physical Location & Seq
Forward (+)
1041086 .. 1041802
717 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G02360.1

Sequence Viewer

Length: 465 bp
ATGTCGCTAGACGCGAATACTTGTTCTATCGTCTTCTTTCTATTCTTCACTGTCTCTTTCGCCGTCTCCGGCCAAAAGCCAACCGCTTACGACGCCGTCAAACTCTATAACTTACCACCAGGAATCCTCCCAAAAGGAGTGGTTGACTATGAGCTTAACCCAAAAACAGGCAACTTCAAAGTCTACTTCAATGACACGTGTGAATTCACCATCCAATCCTACCAGCTCAAGTACAAATCAACTATCTCCGGCGTTATATCACCCGGTCATGTCAAGAATCTGAAAGGAGTTAGTGTTAAGGTTCTTTTCTTCTGGGTTAATATTGCTGAAGTGTCTCTTGACGGCGCCGATCTCGACTTCTCCGTCGGAATCGCGTCGGCGAGTTTTCCGGCTGCTAATTTTGAAGAGAGTCCTCAGTGTGGTTGTGGGTTTGATTGTAATAATGGGCTTTTATTTTCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

154

Amino Acids

16.7

Weight (kDa)

4.96

Isoelectric Point (pI)

21.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF538 PF04398 29 - 135 1.7e-34 Protein of unknown function, DUF538
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015829)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02360
fragaria_vesca FvH4_2g25890
malus_domestica MD03G1290400.v1.1 MD11G1308100.v1.1
prunus_persica Prupe.8G263400_v2.0.a1
pyrus_communis pycom03g22970
rosa_chinensis RchiOBHm_Chr6g0294221
rosa_laevigata RLG00000011889
rosa_roxburghii Rroxscaffold_7G00173540
rosa_rugosa Rorug06G0242600
rosa_samantha Rh6AG354800 Rh6BG361700 Rh6CG369000 Rh6DG355800
rosa_wichuraiana Rw6G030920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 362
AccB1I GGYRCC 1 cut(s) 344
AccI GTMKAC 1 cut(s) 183
AccII CGCG 2 cut(s) 14, 374
AciI CCGC 1 cut(s) 84
AcoI YGGCCR 1 cut(s) 70
AcsI RAATTY 1 cut(s) 203
AcuI CTGAAG 1 cut(s) 348
AcvI CACGTG 1 cut(s) 198
AcyI GRCGYC 2 cut(s) 93, 345
AfaI GTAC 1 cut(s) 233
AfiI CCNNNNNNNGG 2 cut(s) 167, 419
AflIII ACRYGT 2 cut(s) 195, 197
AgsI TTSAA 3 cut(s) 178, 190, 404
AjnI CCWGG 1 cut(s) 118
AluBI AGCT 2 cut(s) 154, 226
AluI AGCT 2 cut(s) 154, 226
Alw26I GTCTC 3 cut(s) 58, 70, 339
AoxI GGCC 1 cut(s) 70
ApeKI GCWGC 1 cut(s) 392
ApoI RAATTY 1 cut(s) 203
AspLEI GCGC 1 cut(s) 347
AsuC2I CCSGG 1 cut(s) 264
AsuHPI GGTGA 2 cut(s) 199, 252
BanI GGYRCC 1 cut(s) 344
BbrPI CACGTG 1 cut(s) 198
BbsI GAAGAC 1 cut(s) 25
BbvI GCAGC 1 cut(s) 379
BccI CCATC 1 cut(s) 218
BceAI ACGGC 3 cut(s) 47, 80, 358
BciT130I CCWGG 1 cut(s) 120
BcnI CCSGG 1 cut(s) 264
BcoDI GTCTC 3 cut(s) 58, 70, 339
BfaI CTAG 1 cut(s) 8
BfoI RGCGCY 1 cut(s) 348
BisI GCNGC 1 cut(s) 393
BlsI GCNGC 1 cut(s) 394
Bme1390I CCNGG 2 cut(s) 120, 264
BmiI GGNNCC 1 cut(s) 346
BmrFI CCNGG 2 cut(s) 120, 264
BpiI GAAGAC 1 cut(s) 25
BpuEI CTTGAG 1 cut(s) 212
BpuMI CCSGG 1 cut(s) 264
BsaAI YACGTR 1 cut(s) 198
BsaHI GRCGYC 2 cut(s) 93, 345
BsaXI ACNNNNNCTCC 2 cut(s) 279, 309
Bsc4I CCNNNNNNNGG 2 cut(s) 167, 419
BseBI CCWGG 1 cut(s) 120
BseGI GGATG 1 cut(s) 210
BseLI CCNNNNNNNGG 2 cut(s) 167, 419
BseMII CTCAG 1 cut(s) 428
BseXI GCAGC 1 cut(s) 379
Bsh1236I CGCG 2 cut(s) 14, 374
BshFI GGCC 1 cut(s) 72
BshNI GGYRCC 1 cut(s) 344
BsiSI CCGG 4 cut(s) 69, 249, 264, 389
BslI CCNNNNNNNGG 2 cut(s) 167, 419
BsmAI GTCTC 3 cut(s) 58, 70, 339
BsmBI CGTCTC 1 cut(s) 70
BsnI GGCC 1 cut(s) 72
Bsp143I GATC 1 cut(s) 349
BspACI CCGC 1 cut(s) 84
BspANI GGCC 1 cut(s) 72
BspCNI CTCAG 1 cut(s) 427
BspFNI CGCG 2 cut(s) 14, 374
BspLI GGNNCC 1 cut(s) 346
BspT107I GGYRCC 1 cut(s) 344
BssMI GATC 1 cut(s) 349
BssNI GRCGYC 2 cut(s) 93, 345
Bst2UI CCWGG 1 cut(s) 120
Bst4CI ACNGT 1 cut(s) 52
Bst6I CTCTTC 1 cut(s) 399
BstACI GRCGYC 2 cut(s) 93, 345
BstBAI YACGTR 1 cut(s) 198
BstDEI CTNAG 1 cut(s) 414
BstF5I GGATG 1 cut(s) 210
BstFNI CGCG 2 cut(s) 14, 374
BstH2I RGCGCY 1 cut(s) 348
BstHHI GCGC 1 cut(s) 347
BstKTI GATC 1 cut(s) 352
BstMAI GTCTC 3 cut(s) 58, 70, 339
BstMBI GATC 1 cut(s) 349
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstNI CCWGG 1 cut(s) 120
BstSCI CCNGG 2 cut(s) 118, 262
BstUI CGCG 2 cut(s) 14, 374
BstV1I GCAGC 1 cut(s) 379
BstV2I GAAGAC 1 cut(s) 25
BsuRI GGCC 1 cut(s) 72
BtsCI GGATG 1 cut(s) 210
BtsIMutI CAGTG 2 cut(s) 48, 422
CfoI GCGC 1 cut(s) 347
CseI GACGC 3 cut(s) 20, 101, 363
Csp6I GTAC 1 cut(s) 232
CspCI CAANNNNNGTGG 2 cut(s) 120, 155
CviAII CATG 1 cut(s) 269
CviJI RGCY 6 cut(s) 72, 79, 154, 226, 392, 448
CviKI_1 RGCY 6 cut(s) 72, 79, 154, 226, 392, 448
CviQI GTAC 1 cut(s) 232
DdeI CTNAG 1 cut(s) 414
DinI GGCGCC 1 cut(s) 346
DpnI GATC 1 cut(s) 351
DpnII GATC 1 cut(s) 349
DrdI GACNNNNNNGTC 1 cut(s) 362
DseDI GACNNNNNNGTC 1 cut(s) 362
EaeI YGGCCR 1 cut(s) 70
Eam1104I CTCTTC 1 cut(s) 399
EarI CTCTTC 1 cut(s) 399
Eco57I CTGAAG 1 cut(s) 348
Eco72I CACGTG 1 cut(s) 198
EcoRI GAATTC 1 cut(s) 203
EcoRII CCWGG 1 cut(s) 118
EgeI GGCGCC 1 cut(s) 346
EheI GGCGCC 1 cut(s) 346
Esp3I CGTCTC 1 cut(s) 70
FaeI CATG 1 cut(s) 272
FaiI YATR 4 cut(s) 108, 150, 257, 270
FalI AAGNNNNNCTT 2 cut(s) 321, 353
FatI CATG 1 cut(s) 268
FblI GTMKAC 1 cut(s) 183
Fnu4HI GCNGC 1 cut(s) 393
FokI GGATG 1 cut(s) 197
Fsp4HI GCNGC 1 cut(s) 393
FspBI CTAG 1 cut(s) 8
GlaI GCGC 1 cut(s) 346
GluI GCNGC 1 cut(s) 393
HaeII RGCGCY 1 cut(s) 348
HaeIII GGCC 1 cut(s) 72
HapII CCGG 4 cut(s) 69, 249, 264, 389
HgaI GACGC 3 cut(s) 20, 101, 363
HhaI GCGC 1 cut(s) 347
Hin1I GRCGYC 2 cut(s) 93, 345
Hin1II CATG 1 cut(s) 272
Hin6I GCGC 1 cut(s) 345
HinP1I GCGC 1 cut(s) 345
HincII GTYRAC 1 cut(s) 145
HindII GTYRAC 1 cut(s) 145
HinfI GANTC 4 cut(s) 123, 277, 369, 409
HpaII CCGG 4 cut(s) 69, 249, 264, 389
HphI GGTGA 2 cut(s) 199, 252
Hpy166II GTNNAC 2 cut(s) 145, 184
Hpy188I TCNGA 2 cut(s) 282, 368
Hpy188III TCNNGA 4 cut(s) 274, 338, 353, 462
Hpy8I GTNNAC 2 cut(s) 145, 184
Hpy99I CGWCG 3 cut(s) 95, 368, 379
HpyCH4III ACNGT 1 cut(s) 52
HpyCH4IV ACGT 1 cut(s) 197
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpyF3I CTNAG 1 cut(s) 414
HpySE526I ACGT 1 cut(s) 197
Hsp92I GRCGYC 2 cut(s) 93, 345
Hsp92II CATG 1 cut(s) 272
HspAI GCGC 1 cut(s) 345
KasI GGCGCC 1 cut(s) 344
Kzo9I GATC 1 cut(s) 349
LpnPI CCDG 9 cut(s) 82, 105, 132, 153, 236, 262, 277, 298, 402
Lsp1109I GCAGC 1 cut(s) 379
MaeI CTAG 1 cut(s) 8
MaeII ACGT 1 cut(s) 197
MalI GATC 1 cut(s) 351
MboI GATC 1 cut(s) 349
MboII GAAGA 5 cut(s) 25, 37, 301, 416, 450
MluCI AATT 2 cut(s) 203, 397
Mly113I GGCGCC 1 cut(s) 345
MlyI GAGTC 1 cut(s) 418
MmeI TCCRAC 1 cut(s) 346
MnlI CCTC 2 cut(s) 137, 423
MseI TTAA 3 cut(s) 156, 297, 318
MspI CCGG 4 cut(s) 69, 249, 264, 389
MspR9I CCNGG 2 cut(s) 120, 264
MvaI CCWGG 1 cut(s) 120
MvnI CGCG 2 cut(s) 14, 374
MwoI GCNNNNNNNGC 1 cut(s) 92
NarI GGCGCC 1 cut(s) 345
NciI CCSGG 1 cut(s) 264
NdeII GATC 1 cut(s) 349
NlaIII CATG 1 cut(s) 272
NlaIV GGNNCC 1 cut(s) 346
PcsI WCGNNNNNNNCGW 2 cut(s) 11, 360
PfeI GAWTC 3 cut(s) 123, 277, 369
PflFI GACNNNGTC 1 cut(s) 95
PkrI GCNGC 1 cut(s) 394
PleI GAGTC 1 cut(s) 417
PluTI GGCGCC 1 cut(s) 348
PmaCI CACGTG 1 cut(s) 198
PmlI CACGTG 1 cut(s) 198
PpsI GAGTC 1 cut(s) 417
Ppu21I YACGTR 1 cut(s) 198
Psp6I CCWGG 1 cut(s) 118
PspCI CACGTG 1 cut(s) 198
PspGI CCWGG 1 cut(s) 118
PspN4I GGNNCC 1 cut(s) 346
PsyI GACNNNGTC 1 cut(s) 95
RsaI GTAC 1 cut(s) 233
RsaNI GTAC 1 cut(s) 232
SaqAI TTAA 3 cut(s) 156, 297, 318
SatI GCNGC 1 cut(s) 393
Sau3AI GATC 1 cut(s) 349
SchI GAGTC 1 cut(s) 418
ScrFI CCNGG 2 cut(s) 120, 264
SetI ASST 4 cut(s) 156, 200, 228, 303
SfoI GGCGCC 1 cut(s) 346
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
Sse9I AATT 2 cut(s) 203, 397
SsiI CCGC 1 cut(s) 84
SspDI GGCGCC 1 cut(s) 344
SspI AATATT 1 cut(s) 322
SspMI CTAG 1 cut(s) 8
StyD4I CCNGG 2 cut(s) 118, 262
TaaI ACNGT 1 cut(s) 52
TaiI ACGT 1 cut(s) 200
TaqI TCGA 1 cut(s) 354
TasI AATT 2 cut(s) 203, 397
TatI WGTACW 1 cut(s) 231
TfiI GAWTC 3 cut(s) 123, 277, 369
Tru1I TTAA 3 cut(s) 156, 297, 318
Tru9I TTAA 3 cut(s) 156, 297, 318
TscAI CASTG 2 cut(s) 55, 422
TseI GCWGC 1 cut(s) 392
TspGWI ACGGA 1 cut(s) 352
TspRI CASTG 2 cut(s) 55, 422
Tth111I GACNNNGTC 1 cut(s) 95
XapI RAATTY 1 cut(s) 203
XmiI GTMKAC 1 cut(s) 183
XspI CTAG 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.