MD11G1308100.v1.1

Protein of unknown function, DUF538

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0015829
Physical Location & Seq
Forward (+)
42201105 .. 42201569
465 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1308100.v1.1.491

Sequence Viewer

Length: 465 bp
ATGGCTCCGTCGTCGGTGTTTCCCGTCGCCGTTCTCGTGGTCGTTCTCTCATCGTCGTTCGCCTACGGTGACGACGGGCCATCAGCCTATGAGGTGCTTCAAGAATACGGCTTCCCGATCGGCCTTCTTCCCAAAGGAGTGACAGGGTACGAATTCGACAGAGAGTCTGGCAATTTCAAGGCGTATTTTGACGGAGCATGCGGCTTCTCCATTGAAAATTCTTACCAGCTCAGGTACAAATCCACCATAACTGGTGTTTTGTCCAAGGACAGGCTCAAAGATTTGCAGGGCGTCAGTGTTAAGGTACTCTTCTTTTGGCTCAACATTGTCGAGGTGGTTCGCGATGGAGACGAACTGGAATTCTCCGTGGGGATTGCTTCGGCGGACTTCACGATCGACAACTTTGTGGAGAGTCCGCAGTGCGGGTGTGGATTTGATTGTAAGAGTAGAGCTAGCTCTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

155

Amino Acids

16.78

Weight (kDa)

4.43

Isoelectric Point (pI)

36.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF538 PF04398 29 - 135 4.2e-36 Protein of unknown function, DUF538
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0015829)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02360
fragaria_vesca FvH4_2g25890
malus_domestica MD03G1290400.v1.1 MD11G1308100.v1.1
prunus_persica Prupe.8G263400_v2.0.a1
pyrus_communis pycom03g22970
rosa_chinensis RchiOBHm_Chr6g0294221
rosa_laevigata RLG00000011889
rosa_roxburghii Rroxscaffold_7G00173540
rosa_rugosa Rorug06G0242600
rosa_samantha Rh6AG354800 Rh6BG361700 Rh6CG369000 Rh6DG355800
rosa_wichuraiana Rw6G030920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 342
AciI CCGC 4 cut(s) 201, 383, 416, 423
AcsI RAATTY 3 cut(s) 152, 217, 359
AcyI GRCGYC 1 cut(s) 291
AfaI GTAC 3 cut(s) 149, 236, 306
AfiI CCNNNNNNNGG 2 cut(s) 270, 422
AgsI TTSAA 3 cut(s) 101, 178, 215
AhdI GACNNNNNGTC 1 cut(s) 163
AluBI AGCT 3 cut(s) 229, 452, 456
AluI AGCT 3 cut(s) 229, 452, 456
Alw26I GTCTC 1 cut(s) 342
AoxI GGCC 2 cut(s) 77, 121
ApoI RAATTY 3 cut(s) 152, 217, 359
AspS9I GGNCC 1 cut(s) 77
AsuHPI GGTGA 1 cut(s) 80
AsuNHI GCTAGC 1 cut(s) 452
BauI CACGAG 1 cut(s) 35
BccI CCATC 2 cut(s) 88, 338
BceAI ACGGC 2 cut(s) 14, 124
BcoDI GTCTC 1 cut(s) 342
BfaI CTAG 1 cut(s) 453
BisI GCNGC 1 cut(s) 202
BlsI GCNGC 1 cut(s) 203
BmeRI GACNNNNNGTC 1 cut(s) 163
BmgT120I GGNCC 1 cut(s) 77
BmiI GGNNCC 1 cut(s) 6
BmtI GCTAGC 1 cut(s) 456
Bpu10I CCTNAGC 1 cut(s) 230
BsaHI GRCGYC 1 cut(s) 291
BsaJI CCNNGG 2 cut(s) 264, 366
Bsc4I CCNNNNNNNGG 2 cut(s) 270, 422
Bse1I ACTGG 2 cut(s) 256, 360
BseDI CCNNGG 2 cut(s) 264, 366
BseLI CCNNNNNNNGG 2 cut(s) 270, 422
BseMII CTCAG 1 cut(s) 244
BseNI ACTGG 2 cut(s) 256, 360
Bsh1236I CGCG 1 cut(s) 342
Bsh1285I CGRYCG 2 cut(s) 120, 396
BshFI GGCC 2 cut(s) 79, 123
BsiEI CGRYCG 2 cut(s) 120, 396
BslI CCNNNNNNNGG 2 cut(s) 270, 422
BsmAI GTCTC 1 cut(s) 342
BsmBI CGTCTC 1 cut(s) 342
BsnI GGCC 2 cut(s) 79, 123
Bsp143I GATC 2 cut(s) 117, 393
Bsp68I TCGCGA 1 cut(s) 342
BspACI CCGC 4 cut(s) 201, 383, 416, 423
BspANI GGCC 2 cut(s) 79, 123
BspCNI CTCAG 1 cut(s) 243
BspFNI CGCG 1 cut(s) 342
BspLI GGNNCC 1 cut(s) 6
BspOI GCTAGC 1 cut(s) 456
BsrI ACTGG 2 cut(s) 256, 360
BssECI CCNNGG 2 cut(s) 264, 366
BssMI GATC 2 cut(s) 117, 393
BssNI GRCGYC 1 cut(s) 291
BssSI CACGAG 1 cut(s) 35
BssT1I CCWWGG 1 cut(s) 264
Bst2BI CACGAG 1 cut(s) 35
Bst4CI ACNGT 1 cut(s) 68
Bst6I CTCTTC 1 cut(s) 314
BstACI GRCGYC 1 cut(s) 291
BstC8I GCNNGC 2 cut(s) 199, 454
BstDEI CTNAG 1 cut(s) 230
BstDSI CCRYGG 1 cut(s) 366
BstFNI CGCG 1 cut(s) 342
BstKTI GATC 2 cut(s) 120, 396
BstMAI GTCTC 1 cut(s) 342
BstMBI GATC 2 cut(s) 117, 393
BstMCI CGRYCG 2 cut(s) 120, 396
BstNSI RCATGY 1 cut(s) 201
BstUI CGCG 1 cut(s) 342
BsuRI GGCC 2 cut(s) 79, 123
BtgI CCRYGG 1 cut(s) 366
BtgZI GCGATG 1 cut(s) 357
BtsI GCAGTG 1 cut(s) 425
BtsIMutI CAGTG 2 cut(s) 301, 425
BtuMI TCGCGA 1 cut(s) 342
Cac8I GCNNGC 2 cut(s) 199, 454
Cfr13I GGNCC 1 cut(s) 77
CseI GACGC 1 cut(s) 280
Csp6I GTAC 3 cut(s) 148, 235, 305
CviAII CATG 1 cut(s) 198
CviQI GTAC 3 cut(s) 148, 235, 305
DdeI CTNAG 1 cut(s) 230
DpnI GATC 2 cut(s) 119, 395
DpnII GATC 2 cut(s) 117, 393
DriI GACNNNNNGTC 1 cut(s) 163
Eam1104I CTCTTC 1 cut(s) 314
Eam1105I GACNNNNNGTC 1 cut(s) 163
EarI CTCTTC 1 cut(s) 314
EciI GGCGGA 1 cut(s) 398
Eco130I CCWWGG 1 cut(s) 264
EcoRI GAATTC 2 cut(s) 152, 359
EcoT14I CCWWGG 1 cut(s) 264
ErhI CCWWGG 1 cut(s) 264
Esp3I CGTCTC 1 cut(s) 342
FaeI CATG 1 cut(s) 201
FaiI YATR 4 cut(s) 90, 199, 248, 461
FalI AAGNNNNNCTT 2 cut(s) 293, 325
FatI CATG 1 cut(s) 197
FauI CCCGC 1 cut(s) 416
Fnu4HI GCNGC 1 cut(s) 202
Fsp4HI GCNGC 1 cut(s) 202
FspBI CTAG 1 cut(s) 453
GluI GCNGC 1 cut(s) 202
HaeIII GGCC 2 cut(s) 79, 123
HgaI GACGC 1 cut(s) 280
Hin1I GRCGYC 1 cut(s) 291
Hin1II CATG 1 cut(s) 201
HinfI GANTC 2 cut(s) 164, 412
HphI GGTGA 1 cut(s) 80
Hpy188III TCNNGA 4 cut(s) 101, 115, 341, 391
Hpy99I CGWCG 5 cut(s) 13, 16, 29, 58, 77
HpyAV CCTTC 1 cut(s) 134
HpyCH4III ACNGT 1 cut(s) 68
HpyCH4V TGCA 1 cut(s) 286
HpyF3I CTNAG 1 cut(s) 230
Hsp92I GRCGYC 1 cut(s) 291
Hsp92II CATG 1 cut(s) 201
Kzo9I GATC 2 cut(s) 117, 393
LmnI GCTCC 2 cut(s) 10, 194
LpnPI CCDG 8 cut(s) 129, 153, 217, 237, 239, 256, 272, 341
MaeI CTAG 1 cut(s) 453
MaeIII GTNAC 2 cut(s) 68, 139
MalI GATC 2 cut(s) 119, 395
MboI GATC 2 cut(s) 117, 393
MboII GAAGA 2 cut(s) 119, 301
MluCI AATT 4 cut(s) 152, 172, 217, 359
MlyI GAGTC 2 cut(s) 173, 421
MnlI CCTC 2 cut(s) 85, 325
MseI TTAA 1 cut(s) 300
MvnI CGCG 1 cut(s) 342
NdeII GATC 2 cut(s) 117, 393
NheI GCTAGC 1 cut(s) 452
NlaIII CATG 1 cut(s) 201
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 2 cut(s) 68, 139
NruI TCGCGA 1 cut(s) 342
NspI RCATGY 1 cut(s) 201
PaeI GCATGC 1 cut(s) 201
PcsI WCGNNNNNNNCGW 1 cut(s) 33
PkrI GCNGC 1 cut(s) 203
Ple19I CGATCG 2 cut(s) 120, 396
PleI GAGTC 2 cut(s) 172, 420
PpsI GAGTC 2 cut(s) 172, 420
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 77
PvuI CGATCG 2 cut(s) 120, 396
RruI TCGCGA 1 cut(s) 342
RsaI GTAC 3 cut(s) 149, 236, 306
RsaNI GTAC 3 cut(s) 148, 235, 305
SaqAI TTAA 1 cut(s) 300
SatI GCNGC 1 cut(s) 202
Sau3AI GATC 2 cut(s) 117, 393
Sau96I GGNCC 1 cut(s) 77
SchI GAGTC 2 cut(s) 173, 421
SetI ASST 7 cut(s) 96, 231, 236, 306, 336, 454, 458
SphI GCATGC 1 cut(s) 201
Sse9I AATT 4 cut(s) 152, 172, 217, 359
SsiI CCGC 4 cut(s) 201, 383, 416, 423
SspMI CTAG 1 cut(s) 453
StyI CCWWGG 1 cut(s) 264
TaaI ACNGT 1 cut(s) 68
TaqI TCGA 3 cut(s) 156, 330, 396
TasI AATT 4 cut(s) 152, 172, 217, 359
TauI GCSGC 1 cut(s) 204
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TscAI CASTG 2 cut(s) 301, 425
TseFI GTSAC 2 cut(s) 68, 139
Tsp45I GTSAC 2 cut(s) 68, 139
TspGWI ACGGA 2 cut(s) 207, 355
TspRI CASTG 2 cut(s) 301, 425
XapI RAATTY 3 cut(s) 152, 217, 359
XceI RCATGY 1 cut(s) 201
XspI CTAG 1 cut(s) 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.