Rorug06G0242600

Protein of unknown function, DUF538

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0015829
Physical Location & Seq
Reverse (-)
38606190 .. 38606813
624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0242600.1

Sequence Viewer

Length: 624 bp
ATGGCTGGCTCAATGGCGGTGGCGCAGGGTTCCGCAAGGGTGTCGCTGGGATCTGCGGGGCTTGAGGCTCTGAAGGCGGACTGTTGGTACATGGTGGGGCGTTTACTTAGACCCAAAGCCATGTTTCCTGGCTTCAAAGGAACGATCTCTTCAATCTGGAGGATTCGTTCGGGGTTAACGATCCAAGATGTAAGGGATCGTTTTGTGTTTCAATTTGATCGAGAAGCTGATCGCAACAAAATCTTGCATGGAGGCCCGTGGTTTTATAGGAACACCATGCTGGTGTTGGGTGGGTATGATGGTATAGGGCCGGTGGCGGAAGTCTCTCTCAATCTTCTGGAGACCTGGGTCGTTGTCAAGGGTCTCCCACTGGTGCTCCGGAACAAGAAGGCGCTAGGGTTGGTTGGGGCGTCTATCGGTCGTGTTGTCCGCTTTGATCAGACAGCCCTTACCCGGAAGGAAGAGGAGCAACATATCCGTCTTGTACTGGACGTGTGTGACAGGGTTCGGGGTTGGATGGTGTTTGAGTTTTCGCCGGTGGTGGTACCAGAGTTGACGTTGGTGTACGAGAAGCTAAAGGGATTTTACCGTAATTGTGGGCTGTTCATCCACGATGCGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

207

Amino Acids

23.2

Weight (kDa)

9.63

Isoelectric Point (pI)

36.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 31 - 96 9e-09 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015829)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02360
fragaria_vesca FvH4_2g25890
malus_domestica MD03G1290400.v1.1 MD11G1308100.v1.1
prunus_persica Prupe.8G263400_v2.0.a1
pyrus_communis pycom03g22970
rosa_chinensis RchiOBHm_Chr6g0294221
rosa_laevigata RLG00000011889
rosa_roxburghii Rroxscaffold_7G00173540
rosa_rugosa Rorug06G0242600
rosa_samantha Rh6AG354800 Rh6BG361700 Rh6CG369000 Rh6DG355800
rosa_wichuraiana Rw6G030920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 544
AccB1I GGYRCC 1 cut(s) 544
AccIII TCCGGA 1 cut(s) 378
AciI CCGC 7 cut(s) 17, 33, 56, 77, 317, 430, 617
AclWI GGATC 3 cut(s) 58, 175, 204
AcuI CTGAAG 1 cut(s) 92
AcyI GRCGYC 1 cut(s) 410
AfaI GTAC 4 cut(s) 89, 486, 546, 566
AfiI CCNNNNNNNGG 2 cut(s) 453, 616
AflIII ACRYGT 1 cut(s) 492
AgsI TTSAA 3 cut(s) 136, 153, 212
AjiI CACGTC 1 cut(s) 493
AjnI CCWGG 2 cut(s) 127, 344
AloI GAACNNNNNNTCC 2 cut(s) 151, 183
AluBI AGCT 2 cut(s) 227, 574
AluI AGCT 2 cut(s) 227, 574
Alw21I GWGCWC 1 cut(s) 378
Alw26I GTCTC 3 cut(s) 328, 335, 368
AlwI GGATC 3 cut(s) 58, 175, 204
Aor13HI TCCGGA 1 cut(s) 378
AoxI GGCC 2 cut(s) 253, 308
Asp718I GGTACC 1 cut(s) 544
AspLEI GCGC 2 cut(s) 25, 394
AspS9I GGNCC 2 cut(s) 254, 308
AsuC2I CCSGG 1 cut(s) 454
BaeI ACNNNNGTAYC 2 cut(s) 536, 569
BanI GGYRCC 1 cut(s) 544
Bbv12I GWGCWC 1 cut(s) 378
BccI CCATC 2 cut(s) 293, 511
BcgI CGANNNNNNTGC 2 cut(s) 24, 58
BciT130I CCWGG 2 cut(s) 129, 346
BclI TGATCA 1 cut(s) 436
BcnI CCSGG 1 cut(s) 454
BcoDI GTCTC 3 cut(s) 328, 335, 368
BfaI CTAG 1 cut(s) 395
BfoI RGCGCY 1 cut(s) 395
Bme1390I CCNGG 3 cut(s) 129, 346, 454
BmgBI CACGTC 1 cut(s) 493
BmgT120I GGNCC 2 cut(s) 254, 308
BmiI GGNNCC 2 cut(s) 31, 546
BmrFI CCNGG 3 cut(s) 129, 346, 454
BmsI GCATC 1 cut(s) 604
BoxI GACNNNNGTC 1 cut(s) 347
BpmI CTGGAG 2 cut(s) 178, 359
BpuEI CTTGAG 1 cut(s) 83
BpuMI CCSGG 1 cut(s) 454
BsaHI GRCGYC 1 cut(s) 410
BsaI GGTCTC 2 cut(s) 335, 368
BsaJI CCNNGG 2 cut(s) 257, 345
BsaWI WCCGGW 1 cut(s) 378
BsaXI ACNNNNNCTCC 4 cut(s) 151, 181, 360, 390
Bsc4I CCNNNNNNNGG 2 cut(s) 453, 616
Bse118I RCCGGY 2 cut(s) 310, 535
Bse1I ACTGG 2 cut(s) 375, 492
BseAI TCCGGA 1 cut(s) 378
BseBI CCWGG 2 cut(s) 129, 346
BseDI CCNNGG 2 cut(s) 257, 345
BseGI GGATG 2 cut(s) 522, 606
BseLI CCNNNNNNNGG 2 cut(s) 453, 616
BseNI ACTGG 2 cut(s) 375, 492
BseRI GAGGAG 1 cut(s) 479
BseYI CCCAGC 1 cut(s) 46
Bsh1285I CGRYCG 1 cut(s) 421
BshFI GGCC 2 cut(s) 255, 310
BshNI GGYRCC 1 cut(s) 544
BsiEI CGRYCG 1 cut(s) 421
BsiHKAI GWGCWC 1 cut(s) 378
BsiSI CCGG 4 cut(s) 311, 379, 454, 536
BslI CCNNNNNNNGG 2 cut(s) 453, 616
BsmAI GTCTC 3 cut(s) 328, 335, 368
BsnI GGCC 2 cut(s) 255, 310
Bso31I GGTCTC 2 cut(s) 335, 368
Bsp1286I GDGCHC 1 cut(s) 378
Bsp13I TCCGGA 1 cut(s) 378
Bsp143I GATC 7 cut(s) 50, 144, 180, 196, 217, 229, 436
BspACI CCGC 7 cut(s) 17, 33, 56, 77, 317, 430, 617
BspANI GGCC 2 cut(s) 255, 310
BspEI TCCGGA 1 cut(s) 378
BspLI GGNNCC 2 cut(s) 31, 546
BspPI GGATC 3 cut(s) 58, 175, 204
BspT107I GGYRCC 1 cut(s) 544
BspTNI GGTCTC 2 cut(s) 335, 368
BsrFI RCCGGY 2 cut(s) 310, 535
BsrI ACTGG 2 cut(s) 375, 492
BssAI RCCGGY 2 cut(s) 310, 535
BssECI CCNNGG 2 cut(s) 257, 345
BssMI GATC 7 cut(s) 50, 144, 180, 196, 217, 229, 436
BssNI GRCGYC 1 cut(s) 410
Bst2UI CCWGG 2 cut(s) 129, 346
Bst4CI ACNGT 2 cut(s) 83, 590
Bst6I CTCTTC 2 cut(s) 154, 456
BstACI GRCGYC 1 cut(s) 410
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 1 cut(s) 107
BstDSI CCRYGG 1 cut(s) 257
BstF5I GGATG 2 cut(s) 522, 606
BstH2I RGCGCY 1 cut(s) 395
BstHHI GCGC 2 cut(s) 25, 394
BstKTI GATC 7 cut(s) 53, 147, 183, 199, 220, 232, 439
BstMAI GTCTC 3 cut(s) 328, 335, 368
BstMBI GATC 7 cut(s) 50, 144, 180, 196, 217, 229, 436
BstMCI CGRYCG 1 cut(s) 421
BstMWI GCNNNNNNNGC 1 cut(s) 74
BstNI CCWGG 2 cut(s) 129, 346
BstPAI GACNNNNGTC 1 cut(s) 347
BstSCI CCNGG 3 cut(s) 127, 344, 452
BstX2I RGATCY 1 cut(s) 50
BstYI RGATCY 1 cut(s) 50
BsuRI GGCC 2 cut(s) 255, 310
BtgI CCRYGG 1 cut(s) 257
BtrI CACGTC 1 cut(s) 493
BtsCI GGATG 2 cut(s) 522, 606
BtsIMutI CAGTG 1 cut(s) 368
Cac8I GCNNGC 1 cut(s) 7
CfoI GCGC 2 cut(s) 25, 394
Cfr10I RCCGGY 2 cut(s) 310, 535
Cfr13I GGNCC 2 cut(s) 254, 308
CseI GACGC 1 cut(s) 399
Csp6I GTAC 4 cut(s) 88, 485, 545, 565
CspCI CAANNNNNGTGG 1 cut(s) 35
CviAII CATG 4 cut(s) 91, 121, 248, 277
CviQI GTAC 4 cut(s) 88, 485, 545, 565
DdeI CTNAG 1 cut(s) 107
DpnI GATC 7 cut(s) 52, 146, 182, 198, 219, 231, 438
DpnII GATC 7 cut(s) 50, 144, 180, 196, 217, 229, 436
Eam1104I CTCTTC 2 cut(s) 154, 456
EarI CTCTTC 2 cut(s) 154, 456
EciI GGCGGA 2 cut(s) 92, 332
Eco31I GGTCTC 2 cut(s) 335, 368
Eco57I CTGAAG 1 cut(s) 92
EcoRII CCWGG 2 cut(s) 127, 344
FaeI CATG 4 cut(s) 94, 124, 251, 280
FaiI YATR 9 cut(s) 92, 122, 249, 267, 278, 297, 305, 474, 622
FatI CATG 4 cut(s) 90, 120, 247, 276
FauI CCCGC 1 cut(s) 49
FbaI TGATCA 1 cut(s) 436
FokI GGATG 2 cut(s) 529, 593
FspBI CTAG 1 cut(s) 395
GlaI GCGC 2 cut(s) 24, 393
GsaI CCCAGC 1 cut(s) 50
GsuI CTGGAG 2 cut(s) 178, 359
HaeII RGCGCY 1 cut(s) 395
HaeIII GGCC 2 cut(s) 255, 310
HapII CCGG 4 cut(s) 311, 379, 454, 536
HgaI GACGC 1 cut(s) 399
HhaI GCGC 2 cut(s) 25, 394
Hin1I GRCGYC 1 cut(s) 410
Hin1II CATG 4 cut(s) 94, 124, 251, 280
Hin6I GCGC 2 cut(s) 23, 392
HinP1I GCGC 2 cut(s) 23, 392
HincII GTYRAC 2 cut(s) 177, 555
HindII GTYRAC 2 cut(s) 177, 555
HinfI GANTC 1 cut(s) 163
HpaI GTTAAC 1 cut(s) 177
HpaII CCGG 4 cut(s) 311, 379, 454, 536
Hpy166II GTNNAC 4 cut(s) 104, 177, 555, 565
Hpy188I TCNGA 2 cut(s) 72, 441
Hpy188III TCNNGA 4 cut(s) 157, 221, 338, 379
Hpy8I GTNNAC 4 cut(s) 104, 177, 555, 565
HpyAV CCTTC 3 cut(s) 67, 382, 451
HpyCH4III ACNGT 2 cut(s) 83, 590
HpyCH4IV ACGT 2 cut(s) 492, 557
HpyCH4V TGCA 1 cut(s) 247
HpyF10VI GCNNNNNNNGC 1 cut(s) 74
HpyF3I CTNAG 1 cut(s) 107
HpySE526I ACGT 2 cut(s) 492, 557
Hsp92I GRCGYC 1 cut(s) 410
Hsp92II CATG 4 cut(s) 94, 124, 251, 280
HspAI GCGC 2 cut(s) 23, 392
Kpn2I TCCGGA 1 cut(s) 378
KpnI GGTACC 1 cut(s) 548
Ksp22I TGATCA 1 cut(s) 436
KspAI GTTAAC 1 cut(s) 177
Kzo9I GATC 7 cut(s) 50, 144, 180, 196, 217, 229, 436
LmnI GCTCC 2 cut(s) 381, 466
LweI GCATC 1 cut(s) 604
MaeI CTAG 1 cut(s) 395
MaeII ACGT 2 cut(s) 492, 557
MaeIII GTNAC 1 cut(s) 497
MalI GATC 7 cut(s) 52, 146, 182, 198, 219, 231, 438
MboI GATC 7 cut(s) 50, 144, 180, 196, 217, 229, 436
MboII GAAGA 3 cut(s) 141, 326, 473
MflI RGATCY 1 cut(s) 50
MhlI GDGCHC 1 cut(s) 378
MluCI AATT 2 cut(s) 212, 592
MmeI TCCRAC 1 cut(s) 494
MnlI CCTC 4 cut(s) 58, 153, 245, 457
MroI TCCGGA 1 cut(s) 378
MseI TTAA 1 cut(s) 176
MslI CAYNNNNRTG 1 cut(s) 281
MspI CCGG 4 cut(s) 311, 379, 454, 536
MspR9I CCNGG 3 cut(s) 129, 346, 454
MvaI CCWGG 2 cut(s) 129, 346
MwoI GCNNNNNNNGC 1 cut(s) 74
NciI CCSGG 1 cut(s) 454
NdeII GATC 7 cut(s) 50, 144, 180, 196, 217, 229, 436
NlaIII CATG 4 cut(s) 94, 124, 251, 280
NlaIV GGNNCC 2 cut(s) 31, 546
NmuCI GTSAC 1 cut(s) 497
PcsI WCGNNNNNNNCGW 1 cut(s) 176
PfeI GAWTC 1 cut(s) 163
PshAI GACNNNNGTC 1 cut(s) 347
Psp6I CCWGG 2 cut(s) 127, 344
PspFI CCCAGC 1 cut(s) 46
PspGI CCWGG 2 cut(s) 127, 344
PspN4I GGNNCC 2 cut(s) 31, 546
PspPI GGNCC 2 cut(s) 254, 308
PsuI RGATCY 1 cut(s) 50
RsaI GTAC 4 cut(s) 89, 486, 546, 566
RsaNI GTAC 4 cut(s) 88, 485, 545, 565
RseI CAYNNNNRTG 1 cut(s) 281
SaqAI TTAA 1 cut(s) 176
Sau3AI GATC 7 cut(s) 50, 144, 180, 196, 217, 229, 436
Sau96I GGNCC 2 cut(s) 254, 308
ScrFI CCNGG 3 cut(s) 129, 346, 454
SduI GDGCHC 1 cut(s) 378
SetI ASST 5 cut(s) 229, 347, 495, 560, 576
SfaNI GCATC 1 cut(s) 604
SgrAI CRCCGGYG 1 cut(s) 535
SmiMI CAYNNNNRTG 1 cut(s) 281
SmlI CTYRAG 1 cut(s) 62
SmoI CTYRAG 1 cut(s) 62
Sse9I AATT 2 cut(s) 212, 592
SsiI CCGC 7 cut(s) 17, 33, 56, 77, 317, 430, 617
SspMI CTAG 1 cut(s) 395
StyD4I CCNGG 3 cut(s) 127, 344, 452
TaaI ACNGT 2 cut(s) 83, 590
TaiI ACGT 2 cut(s) 495, 560
TaqI TCGA 1 cut(s) 220
TaqII GACCGA 1 cut(s) 407
TasI AATT 2 cut(s) 212, 592
TatI WGTACW 1 cut(s) 484
TfiI GAWTC 1 cut(s) 163
Tru1I TTAA 1 cut(s) 176
Tru9I TTAA 1 cut(s) 176
TscAI CASTG 1 cut(s) 375
TseFI GTSAC 1 cut(s) 497
Tsp45I GTSAC 1 cut(s) 497
TspDTI ATGAA 1 cut(s) 595
TspGWI ACGGA 1 cut(s) 467
TspRI CASTG 1 cut(s) 375
XcmI CCANNNNNNNNNTGG 1 cut(s) 283
XspI CTAG 1 cut(s) 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.