FvH4_2g25890

Protein of unknown function, DUF538

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0015829
Physical Location & Seq
Reverse (-)
20893252 .. 20894211
960 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g25890.t1

Sequence Viewer

Length: 507 bp
ATGGGTTCCTTCTCTCATCGAAATCTCACATCTTCATCGATGGTGTTTCCCTTACTCACCATTCTCTCATCCTTTGCCTACTGCGAAGTTGGCAAGCCATCAGCCTACGACGTACTTCAACAATATGACTTCCCAATCGGTATTCTTCCCATAGGAGTTACAGGCTACGAGTTGAACACAGAAACCGGGCATTTCTCGATCTATTTGAGTGGGACTTGCACCTTCTCCGTTGAAAATTCATACGAGCTTGAGTACAAGTCCACCATATCTGGTTTTCTGTCCAAAGGCAGGCTCAGTGATCTGAAAGGTGTCAGTGTCAAGGTGTTCTTCTTCTGGCTCAGCATTGTCGAAGTGGTTCATGTTGGCGATGACCTGCAGTTCTCTGTGGGAATTGCTTCGGCTAATTTTCCAGCCAACAACTTCGATGAGAGTCCTCACTGTGGGTGTGGATTTGATTGTAACCGGTTGAGCGCTTTCCTGCCCTCATATCCGGTAGATGCTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

169

Amino Acids

18.44

Weight (kDa)

4.73

Isoelectric Point (pI)

30.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF538 PF04398 35 - 141 4.4e-35 Protein of unknown function, DUF538
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015829)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02360
fragaria_vesca FvH4_2g25890
malus_domestica MD03G1290400.v1.1 MD11G1308100.v1.1
prunus_persica Prupe.8G263400_v2.0.a1
pyrus_communis pycom03g22970
rosa_chinensis RchiOBHm_Chr6g0294221
rosa_laevigata RLG00000011889
rosa_roxburghii Rroxscaffold_7G00173540
rosa_rugosa Rorug06G0242600
rosa_samantha Rh6AG354800 Rh6BG361700 Rh6CG369000 Rh6DG355800
rosa_wichuraiana Rw6G030920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 381
AcsI RAATTY 1 cut(s) 235
AfaI GTAC 2 cut(s) 114, 254
AfeI AGCGCT 1 cut(s) 472
AfiI CCNNNNNNNGG 2 cut(s) 288, 440
AgeI ACCGGT 1 cut(s) 462
AgsI TTSAA 3 cut(s) 119, 175, 233
AluBI AGCT 1 cut(s) 247
AluI AGCT 1 cut(s) 247
Aor51HI AGCGCT 1 cut(s) 472
ApoI RAATTY 1 cut(s) 235
AsiGI ACCGGT 1 cut(s) 462
Asp700I GAANNNNTTC 2 cut(s) 354, 394
AspLEI GCGC 1 cut(s) 473
AsuC2I CCSGG 1 cut(s) 187
AsuHPI GGTGA 1 cut(s) 49
BccI CCATC 2 cut(s) 34, 106
BcnI CCSGG 1 cut(s) 187
BfmI CTRYAG 1 cut(s) 374
BfoI RGCGCY 1 cut(s) 474
BfuAI ACCTGC 1 cut(s) 381
BlpI GCTNAGC 1 cut(s) 338
Bme1390I CCNGG 1 cut(s) 187
BmiI GGNNCC 1 cut(s) 7
BmrFI CCNGG 1 cut(s) 187
BmsI GCATC 1 cut(s) 487
Bpu1102I GCTNAGC 1 cut(s) 338
BpuEI CTTGAG 1 cut(s) 269
BpuMI CCSGG 1 cut(s) 187
Bsa29I ATCGAT 1 cut(s) 38
BsaWI WCCGGW 2 cut(s) 462, 490
Bsc4I CCNNNNNNNGG 2 cut(s) 288, 440
Bse118I RCCGGY 1 cut(s) 462
BseCI ATCGAT 1 cut(s) 38
BseGI GGATG 1 cut(s) 68
BseLI CCNNNNNNNGG 2 cut(s) 288, 440
BseMII CTCAG 2 cut(s) 307, 352
BshTI ACCGGT 1 cut(s) 462
BshVI ATCGAT 1 cut(s) 38
BsiSI CCGG 3 cut(s) 186, 463, 491
BslFI GGGAC 1 cut(s) 226
BslI CCNNNNNNNGG 2 cut(s) 288, 440
BsmFI GGGAC 1 cut(s) 226
Bsp143I GATC 2 cut(s) 198, 298
Bsp1720I GCTNAGC 1 cut(s) 338
BspCNI CTCAG 2 cut(s) 306, 351
BspDI ATCGAT 1 cut(s) 38
BspLI GGNNCC 1 cut(s) 7
BspMAI CTGCAG 1 cut(s) 378
BspMI ACCTGC 1 cut(s) 381
BsrFI RCCGGY 1 cut(s) 462
BssAI RCCGGY 1 cut(s) 462
BssMI GATC 2 cut(s) 198, 298
Bst4CI ACNGT 1 cut(s) 440
BstC8I GCNNGC 2 cut(s) 95, 290
BstDEI CTNAG 2 cut(s) 293, 338
BstF5I GGATG 1 cut(s) 68
BstH2I RGCGCY 1 cut(s) 474
BstHHI GCGC 1 cut(s) 473
BstKTI GATC 2 cut(s) 201, 301
BstMBI GATC 2 cut(s) 198, 298
BstMWI GCNNNNNNNGC 1 cut(s) 90
BstSCI CCNGG 1 cut(s) 185
BstSFI CTRYAG 1 cut(s) 374
Bsu15I ATCGAT 1 cut(s) 38
BsuTUI ATCGAT 1 cut(s) 38
BtgZI GCGATG 1 cut(s) 381
BtsCI GGATG 1 cut(s) 68
BtsIMutI CAGTG 3 cut(s) 301, 319, 436
BveI ACCTGC 1 cut(s) 381
Cac8I GCNNGC 2 cut(s) 95, 290
CfoI GCGC 1 cut(s) 473
Cfr10I RCCGGY 1 cut(s) 462
ClaI ATCGAT 1 cut(s) 38
Csp6I GTAC 2 cut(s) 113, 253
CspAI ACCGGT 1 cut(s) 462
CviAII CATG 1 cut(s) 359
CviJI RGCY 8 cut(s) 97, 104, 165, 247, 292, 337, 401, 413
CviKI_1 RGCY 8 cut(s) 97, 104, 165, 247, 292, 337, 401, 413
CviQI GTAC 2 cut(s) 113, 253
DdeI CTNAG 2 cut(s) 293, 338
DpnI GATC 2 cut(s) 200, 300
DpnII GATC 2 cut(s) 198, 298
Eco47III AGCGCT 1 cut(s) 472
FaeI CATG 1 cut(s) 362
FaiI YATR 6 cut(s) 126, 152, 241, 266, 360, 487
FalI AAGNNNNNCTT 2 cut(s) 311, 343
FaqI GGGAC 1 cut(s) 226
FatI CATG 1 cut(s) 358
FokI GGATG 1 cut(s) 55
GlaI GCGC 1 cut(s) 472
HaeII RGCGCY 1 cut(s) 474
HapII CCGG 3 cut(s) 186, 463, 491
HhaI GCGC 1 cut(s) 473
Hin1II CATG 1 cut(s) 362
Hin6I GCGC 1 cut(s) 471
HinP1I GCGC 1 cut(s) 471
HinfI GANTC 1 cut(s) 430
HpaII CCGG 3 cut(s) 186, 463, 491
HphI GGTGA 1 cut(s) 49
Hpy166II GTNNAC 1 cut(s) 261
Hpy188I TCNGA 1 cut(s) 303
Hpy188III TCNNGA 1 cut(s) 196
Hpy8I GTNNAC 1 cut(s) 261
Hpy99I CGWCG 1 cut(s) 113
HpyAV CCTTC 2 cut(s) 19, 232
HpyCH4III ACNGT 1 cut(s) 440
HpyCH4IV ACGT 1 cut(s) 111
HpyCH4V TGCA 2 cut(s) 219, 376
HpyF10VI GCNNNNNNNGC 1 cut(s) 90
HpyF3I CTNAG 2 cut(s) 293, 338
HpySE526I ACGT 1 cut(s) 111
Hsp92II CATG 1 cut(s) 362
HspAI GCGC 1 cut(s) 471
Kzo9I GATC 2 cut(s) 198, 298
LpnPI CCDG 9 cut(s) 147, 199, 255, 274, 319, 386, 423, 476, 491
LweI GCATC 1 cut(s) 487
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 2 cut(s) 157, 458
MalI GATC 2 cut(s) 200, 300
MboI GATC 2 cut(s) 198, 298
MboII GAAGA 4 cut(s) 24, 137, 319, 322
MluCI AATT 3 cut(s) 235, 390, 403
MlyI GAGTC 1 cut(s) 439
MnlI CCTC 2 cut(s) 444, 493
MroXI GAANNNNTTC 2 cut(s) 354, 394
MspI CCGG 3 cut(s) 186, 463, 491
MspR9I CCNGG 1 cut(s) 187
MwoI GCNNNNNNNGC 1 cut(s) 90
NciI CCSGG 1 cut(s) 187
NdeII GATC 2 cut(s) 198, 298
NlaIII CATG 1 cut(s) 362
NlaIV GGNNCC 1 cut(s) 7
PdmI GAANNNNTTC 2 cut(s) 354, 394
PinAI ACCGGT 1 cut(s) 462
PleI GAGTC 1 cut(s) 438
PpsI GAGTC 1 cut(s) 438
PspN4I GGNNCC 1 cut(s) 7
PstI CTGCAG 1 cut(s) 378
RsaI GTAC 2 cut(s) 114, 254
RsaNI GTAC 2 cut(s) 113, 253
Sau3AI GATC 2 cut(s) 198, 298
SchI GAGTC 1 cut(s) 439
ScrFI CCNGG 1 cut(s) 187
SetI ASST 6 cut(s) 114, 224, 249, 310, 324, 375
SfaNI GCATC 1 cut(s) 487
SfcI CTRYAG 1 cut(s) 374
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
Sse9I AATT 3 cut(s) 235, 390, 403
StyD4I CCNGG 1 cut(s) 185
TaaI ACNGT 1 cut(s) 440
TaiI ACGT 1 cut(s) 114
TaqI TCGA 5 cut(s) 19, 38, 197, 348, 423
TasI AATT 3 cut(s) 235, 390, 403
TatI WGTACW 1 cut(s) 252
TscAI CASTG 3 cut(s) 301, 319, 443
TspDTI ATGAA 3 cut(s) 24, 228, 347
TspGWI ACGGA 1 cut(s) 217
TspRI CASTG 3 cut(s) 301, 319, 443
XapI RAATTY 1 cut(s) 235
XmnI GAANNNNTTC 2 cut(s) 354, 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.