Rroxscaffold_7G00173540

Protein of unknown function, DUF538

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0015829
Physical Location & Seq
Forward (+)
13532780 .. 13534664
1885 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00173540.1

Sequence Viewer

Length: 507 bp
ATGGGTTCTTTATCTGGTAAAAATCCCACATCTCCGTTGACAGTGATTCCCTTACTCATCATTCTCTCATCCTTTGCCTACTGCGAAGTTGGCAAGCCATCAGCCTATGAAGTACTTCAACAATATGGCTTCCCAATTGGTATTCTTCCCTTTGGAGTAACAGGCTACGAGTTGAACACAGAAACTGGCCAGTTCTCGGCCTATTTGAACGGAACTTGCAGCTTCTCTGTTGAAGATTCATATCAGCTCGAGTACAAGTCCACCATAACTGGTGTTTTGTCCAAAGACAGGCTCAAAGATTTGAAGGGCGTCAGTGTCAAGGTGCTCTTCTTCTGGCTTAGCATTGTCGAAGTGGTTCATGACGGTGACGAGCTGCAGTTCTCTGTGGGGATTGCTTCGGCAAATTTTCCAGTCAACAACTTCGAGGAGCGTCCTCAGTGTGGGTGTGGATTGGATTGTAACCAGTTGAGCATTGTCCTGCCTTCATATCCAGACAGTACATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

168

Amino Acids

18.33

Weight (kDa)

4.46

Isoelectric Point (pI)

22.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF538 PF04398 35 - 142 9e-37 Protein of unknown function, DUF538
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015829)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02360
fragaria_vesca FvH4_2g25890
malus_domestica MD03G1290400.v1.1 MD11G1308100.v1.1
prunus_persica Prupe.8G263400_v2.0.a1
pyrus_communis pycom03g22970
rosa_chinensis RchiOBHm_Chr6g0294221
rosa_laevigata RLG00000011889
rosa_roxburghii Rroxscaffold_7G00173540
rosa_rugosa Rorug06G0242600
rosa_samantha Rh6AG354800 Rh6BG361700 Rh6CG369000 Rh6DG355800
rosa_wichuraiana Rw6G030920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 187
AcsI RAATTY 1 cut(s) 403
AcyI GRCGYC 1 cut(s) 309
AfaI GTAC 3 cut(s) 114, 254, 499
AfiI CCNNNNNNNGG 3 cut(s) 196, 288, 440
AgsI TTSAA 5 cut(s) 119, 175, 208, 233, 304
AluBI AGCT 3 cut(s) 222, 247, 373
AluI AGCT 3 cut(s) 222, 247, 373
Alw21I GWGCWC 1 cut(s) 327
AlwNI CAGNNNCTG 1 cut(s) 185
Ama87I CYCGRG 1 cut(s) 248
AoxI GGCC 2 cut(s) 187, 198
ApeKI GCWGC 2 cut(s) 219, 373
ApoI RAATTY 1 cut(s) 403
Asp700I GAANNNNTTC 2 cut(s) 114, 354
AsuHPI GGTGA 1 cut(s) 377
AvaI CYCGRG 1 cut(s) 248
BalI TGGCCA 1 cut(s) 189
Bbv12I GWGCWC 1 cut(s) 327
BbvI GCAGC 2 cut(s) 231, 360
BccI CCATC 1 cut(s) 106
BfmI CTRYAG 1 cut(s) 374
BisI GCNGC 2 cut(s) 220, 374
BlpI GCTNAGC 1 cut(s) 338
BlsI GCNGC 2 cut(s) 221, 375
BmcAI AGTACT 1 cut(s) 114
BmeT110I CYCGRG 1 cut(s) 248
Bpu1102I GCTNAGC 1 cut(s) 338
BsaBI GATNNNNATC 1 cut(s) 240
BsaHI GRCGYC 1 cut(s) 309
Bsc4I CCNNNNNNNGG 3 cut(s) 196, 288, 440
Bse1I ACTGG 5 cut(s) 190, 190, 274, 410, 463
Bse8I GATNNNNATC 1 cut(s) 240
BseGI GGATG 1 cut(s) 68
BseJI GATNNNNATC 1 cut(s) 240
BseLI CCNNNNNNNGG 3 cut(s) 196, 288, 440
BseMII CTCAG 1 cut(s) 449
BseNI ACTGG 5 cut(s) 190, 190, 274, 410, 463
BseRI GAGGAG 1 cut(s) 440
BseXI GCAGC 2 cut(s) 231, 360
BshFI GGCC 2 cut(s) 189, 200
BsiHKAI GWGCWC 1 cut(s) 327
BsiHKCI CYCGRG 1 cut(s) 248
BslI CCNNNNNNNGG 3 cut(s) 196, 288, 440
BsnI GGCC 2 cut(s) 189, 200
BsoBI CYCGRG 1 cut(s) 248
Bsp1286I GDGCHC 1 cut(s) 327
Bsp1720I GCTNAGC 1 cut(s) 338
BspANI GGCC 2 cut(s) 189, 200
BspCNI CTCAG 1 cut(s) 448
BspHI TCATGA 1 cut(s) 358
BspMAI CTGCAG 1 cut(s) 378
BspQI GCTCTTC 1 cut(s) 332
BsrI ACTGG 5 cut(s) 190, 190, 274, 410, 463
BssNI GRCGYC 1 cut(s) 309
Bst4CI ACNGT 3 cut(s) 43, 365, 497
Bst6I CTCTTC 1 cut(s) 332
BstACI GRCGYC 1 cut(s) 309
BstC8I GCNNGC 1 cut(s) 95
BstDEI CTNAG 2 cut(s) 338, 435
BstF5I GGATG 1 cut(s) 68
BstMWI GCNNNNNNNGC 1 cut(s) 90
BstSFI CTRYAG 1 cut(s) 374
BstV1I GCAGC 2 cut(s) 231, 360
BsuRI GGCC 2 cut(s) 189, 200
BtsCI GGATG 1 cut(s) 68
BtsIMutI CAGTG 3 cut(s) 48, 319, 443
Cac8I GCNNGC 1 cut(s) 95
CaiI CAGNNNCTG 1 cut(s) 185
CciI TCATGA 1 cut(s) 358
CseI GACGC 2 cut(s) 298, 419
Csp6I GTAC 3 cut(s) 113, 253, 498
CviAII CATG 1 cut(s) 359
CviQI GTAC 3 cut(s) 113, 253, 498
DdeI CTNAG 2 cut(s) 338, 435
EaeI YGGCCR 1 cut(s) 187
Eam1104I CTCTTC 1 cut(s) 332
EarI CTCTTC 1 cut(s) 332
Eco88I CYCGRG 1 cut(s) 248
FaeI CATG 1 cut(s) 362
FaiI YATR 7 cut(s) 108, 126, 241, 266, 360, 487, 502
FalI AAGNNNNNCTT 2 cut(s) 311, 343
FatI CATG 1 cut(s) 358
Fnu4HI GCNGC 2 cut(s) 220, 374
FokI GGATG 1 cut(s) 55
Fsp4HI GCNGC 2 cut(s) 220, 374
GluI GCNGC 2 cut(s) 220, 374
HaeIII GGCC 2 cut(s) 189, 200
HgaI GACGC 2 cut(s) 298, 419
Hin1I GRCGYC 1 cut(s) 309
Hin1II CATG 1 cut(s) 362
HincII GTYRAC 2 cut(s) 39, 415
HindII GTYRAC 2 cut(s) 39, 415
HinfI GANTC 2 cut(s) 46, 236
HphI GGTGA 1 cut(s) 377
Hpy166II GTNNAC 3 cut(s) 39, 261, 415
Hpy188III TCNNGA 2 cut(s) 359, 491
Hpy8I GTNNAC 3 cut(s) 39, 261, 415
HpyAV CCTTC 2 cut(s) 298, 492
HpyCH4III ACNGT 3 cut(s) 43, 365, 497
HpyCH4V TGCA 2 cut(s) 219, 376
HpyF10VI GCNNNNNNNGC 1 cut(s) 90
HpyF3I CTNAG 2 cut(s) 338, 435
Hsp92I GRCGYC 1 cut(s) 309
Hsp92II CATG 1 cut(s) 362
LguI GCTCTTC 1 cut(s) 332
LmnI GCTCC 1 cut(s) 427
LpnPI CCDG 9 cut(s) 147, 171, 203, 255, 274, 319, 423, 476, 491
Lsp1109I GCAGC 2 cut(s) 231, 360
MaeIII GTNAC 3 cut(s) 157, 365, 458
MboII GAAGA 4 cut(s) 137, 245, 319, 322
MfeI CAATTG 1 cut(s) 135
MhlI GDGCHC 1 cut(s) 327
MlsI TGGCCA 1 cut(s) 189
MluCI AATT 2 cut(s) 135, 403
MluNI TGGCCA 1 cut(s) 189
MnlI CCTC 2 cut(s) 418, 444
Mox20I TGGCCA 1 cut(s) 189
MroXI GAANNNNTTC 2 cut(s) 114, 354
MscI TGGCCA 1 cut(s) 189
MslI CAYNNNNRTG 1 cut(s) 363
Msp20I TGGCCA 1 cut(s) 189
MunI CAATTG 1 cut(s) 135
MwoI GCNNNNNNNGC 1 cut(s) 90
NlaIII CATG 1 cut(s) 362
NmeAIII GCCGAG 1 cut(s) 176
NmuCI GTSAC 1 cut(s) 365
PaeR7I CTCGAG 1 cut(s) 248
PagI TCATGA 1 cut(s) 358
PciSI GCTCTTC 1 cut(s) 332
PdmI GAANNNNTTC 2 cut(s) 114, 354
PfeI GAWTC 2 cut(s) 46, 236
PkrI GCNGC 2 cut(s) 221, 375
PspXI VCTCGAGB 1 cut(s) 248
PstI CTGCAG 1 cut(s) 378
PstNI CAGNNNCTG 1 cut(s) 185
RsaI GTAC 3 cut(s) 114, 254, 499
RsaNI GTAC 3 cut(s) 113, 253, 498
RseI CAYNNNNRTG 1 cut(s) 363
SapI GCTCTTC 1 cut(s) 332
SatI GCNGC 2 cut(s) 220, 374
ScaI AGTACT 1 cut(s) 114
SduI GDGCHC 1 cut(s) 327
SetI ASST 4 cut(s) 224, 249, 324, 375
SfcI CTRYAG 1 cut(s) 374
Sfr274I CTCGAG 1 cut(s) 248
SlaI CTCGAG 1 cut(s) 248
SmiMI CAYNNNNRTG 1 cut(s) 363
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
Sse9I AATT 2 cut(s) 135, 403
TaaI ACNGT 3 cut(s) 43, 365, 497
TaqI TCGA 3 cut(s) 249, 348, 423
TasI AATT 2 cut(s) 135, 403
TatI WGTACW 3 cut(s) 112, 252, 497
TfiI GAWTC 2 cut(s) 46, 236
TscAI CASTG 3 cut(s) 48, 319, 443
TseFI GTSAC 1 cut(s) 365
TseI GCWGC 2 cut(s) 219, 373
Tsp45I GTSAC 1 cut(s) 365
TspDTI ATGAA 4 cut(s) 123, 228, 347, 474
TspGWI ACGGA 2 cut(s) 24, 225
TspRI CASTG 3 cut(s) 48, 319, 443
XapI RAATTY 1 cut(s) 403
XhoI CTCGAG 1 cut(s) 248
XmnI GAANNNNTTC 2 cut(s) 114, 354
ZrmI AGTACT 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.