Rw6G030920

Protein of unknown function, DUF538

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0015829
Physical Location & Seq
Reverse (-)
55000426 .. 55001376
951 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G030920.1

Sequence Viewer

Length: 507 bp
ATGGGTTCCTTATCTCGTAGAAATGCCTCATCTCCGTTGACAATGTTTCCCTTACTCATCATTCTCTCATCCTTTGCCTACTGCGAAGTTGGCAAGCCATCAGCCTATGAAGTACTTCAACAATATGGTTTCCCAATTGGTATTCTTCCCATAGGAGTAACAGGCTACGAGTTGAACACAGAAACCGGCCAGTTCTCGGCCTATTTGAACGGAACTTGCAGCTTCTCTGTTGAAGATTCATATCAGCTCGAGTACAAGTCCACCATAACTGGTGTTTTGTCCAAAGACAGGCTCAAAGATTTGAAGGGCGTCCGTGTCAAGGTGCTCTTCTTCTGGCTTAGCATTGTCGAAGTGGTTCATGACGGCGACGAGCTGCAGTTCTCTGTGGGGATTGCTTCGGCAAATTTTCCAGTCAACAACTTCGACGAGCGTCCTCAGTGTGGGTGTGGATTGGATTGTAACCAGTTGAGCACTGTCCAGCCTTCATATCCAGACAGAACATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

168

Amino Acids

18.58

Weight (kDa)

4.8

Isoelectric Point (pI)

27.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF538 PF04398 35 - 141 1.7e-36 Protein of unknown function, DUF538
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0015829)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02360
fragaria_vesca FvH4_2g25890
malus_domestica MD03G1290400.v1.1 MD11G1308100.v1.1
prunus_persica Prupe.8G263400_v2.0.a1
pyrus_communis pycom03g22970
rosa_chinensis RchiOBHm_Chr6g0294221
rosa_laevigata RLG00000011889
rosa_roxburghii Rroxscaffold_7G00173540
rosa_rugosa Rorug06G0242600
rosa_samantha Rh6AG354800 Rh6BG361700 Rh6CG369000 Rh6DG355800
rosa_wichuraiana Rw6G030920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 187
AcsI RAATTY 1 cut(s) 403
AcyI GRCGYC 1 cut(s) 309
AfaI GTAC 2 cut(s) 114, 254
AfiI CCNNNNNNNGG 4 cut(s) 196, 288, 319, 440
AgsI TTSAA 5 cut(s) 119, 175, 208, 233, 304
AluBI AGCT 3 cut(s) 222, 247, 373
AluI AGCT 3 cut(s) 222, 247, 373
Alw21I GWGCWC 2 cut(s) 327, 473
Ama87I CYCGRG 1 cut(s) 248
AoxI GGCC 2 cut(s) 187, 198
ApeKI GCWGC 2 cut(s) 219, 373
ApoI RAATTY 1 cut(s) 403
Asp700I GAANNNNTTC 2 cut(s) 114, 354
AvaI CYCGRG 1 cut(s) 248
Bbv12I GWGCWC 2 cut(s) 327, 473
BbvI GCAGC 2 cut(s) 231, 360
BccI CCATC 1 cut(s) 106
BceAI ACGGC 1 cut(s) 379
BfmI CTRYAG 1 cut(s) 374
BisI GCNGC 2 cut(s) 220, 374
BlpI GCTNAGC 1 cut(s) 338
BlsI GCNGC 2 cut(s) 221, 375
BmcAI AGTACT 1 cut(s) 114
BmeT110I CYCGRG 1 cut(s) 248
BmiI GGNNCC 1 cut(s) 7
BoxI GACNNNNGTC 1 cut(s) 429
Bpu1102I GCTNAGC 1 cut(s) 338
BsaBI GATNNNNATC 1 cut(s) 240
BsaHI GRCGYC 1 cut(s) 309
Bsc4I CCNNNNNNNGG 4 cut(s) 196, 288, 319, 440
Bse118I RCCGGY 1 cut(s) 185
Bse1I ACTGG 4 cut(s) 190, 274, 410, 463
Bse8I GATNNNNATC 1 cut(s) 240
BseGI GGATG 1 cut(s) 68
BseJI GATNNNNATC 1 cut(s) 240
BseLI CCNNNNNNNGG 4 cut(s) 196, 288, 319, 440
BseMII CTCAG 1 cut(s) 449
BseNI ACTGG 4 cut(s) 190, 274, 410, 463
BseXI GCAGC 2 cut(s) 231, 360
BshFI GGCC 2 cut(s) 189, 200
BsiHKAI GWGCWC 2 cut(s) 327, 473
BsiHKCI CYCGRG 1 cut(s) 248
BsiSI CCGG 1 cut(s) 186
BslI CCNNNNNNNGG 4 cut(s) 196, 288, 319, 440
BsnI GGCC 2 cut(s) 189, 200
BsoBI CYCGRG 1 cut(s) 248
Bsp1286I GDGCHC 2 cut(s) 327, 473
Bsp1720I GCTNAGC 1 cut(s) 338
BspANI GGCC 2 cut(s) 189, 200
BspCNI CTCAG 1 cut(s) 448
BspHI TCATGA 1 cut(s) 358
BspLI GGNNCC 1 cut(s) 7
BspMAI CTGCAG 1 cut(s) 378
BspQI GCTCTTC 1 cut(s) 332
BsrFI RCCGGY 1 cut(s) 185
BsrI ACTGG 4 cut(s) 190, 274, 410, 463
BssAI RCCGGY 1 cut(s) 185
BssNI GRCGYC 1 cut(s) 309
Bst4CI ACNGT 1 cut(s) 475
Bst6I CTCTTC 1 cut(s) 332
BstACI GRCGYC 1 cut(s) 309
BstC8I GCNNGC 1 cut(s) 95
BstDEI CTNAG 2 cut(s) 338, 435
BstF5I GGATG 1 cut(s) 68
BstMWI GCNNNNNNNGC 1 cut(s) 90
BstPAI GACNNNNGTC 1 cut(s) 429
BstSFI CTRYAG 1 cut(s) 374
BstV1I GCAGC 2 cut(s) 231, 360
BsuRI GGCC 2 cut(s) 189, 200
BtsCI GGATG 1 cut(s) 68
BtsIMutI CAGTG 2 cut(s) 443, 471
Cac8I GCNNGC 1 cut(s) 95
CciI TCATGA 1 cut(s) 358
Cfr10I RCCGGY 1 cut(s) 185
CseI GACGC 2 cut(s) 298, 419
Csp6I GTAC 2 cut(s) 113, 253
CviAII CATG 1 cut(s) 359
CviQI GTAC 2 cut(s) 113, 253
DdeI CTNAG 2 cut(s) 338, 435
EaeI YGGCCR 1 cut(s) 187
Eam1104I CTCTTC 1 cut(s) 332
EarI CTCTTC 1 cut(s) 332
Eco88I CYCGRG 1 cut(s) 248
FaeI CATG 1 cut(s) 362
FaiI YATR 8 cut(s) 108, 126, 152, 241, 266, 360, 487, 502
FalI AAGNNNNNCTT 2 cut(s) 311, 343
FatI CATG 1 cut(s) 358
Fnu4HI GCNGC 2 cut(s) 220, 374
FokI GGATG 1 cut(s) 55
Fsp4HI GCNGC 2 cut(s) 220, 374
GluI GCNGC 2 cut(s) 220, 374
HaeIII GGCC 2 cut(s) 189, 200
HapII CCGG 1 cut(s) 186
HgaI GACGC 2 cut(s) 298, 419
Hin1I GRCGYC 1 cut(s) 309
Hin1II CATG 1 cut(s) 362
HincII GTYRAC 2 cut(s) 39, 415
HindII GTYRAC 2 cut(s) 39, 415
HinfI GANTC 1 cut(s) 236
HpaII CCGG 1 cut(s) 186
Hpy166II GTNNAC 3 cut(s) 39, 261, 415
Hpy188III TCNNGA 2 cut(s) 359, 491
Hpy8I GTNNAC 3 cut(s) 39, 261, 415
Hpy99I CGWCG 2 cut(s) 371, 428
HpyAV CCTTC 2 cut(s) 298, 492
HpyCH4III ACNGT 1 cut(s) 475
HpyCH4V TGCA 2 cut(s) 219, 376
HpyF10VI GCNNNNNNNGC 1 cut(s) 90
HpyF3I CTNAG 2 cut(s) 338, 435
Hsp92I GRCGYC 1 cut(s) 309
Hsp92II CATG 1 cut(s) 362
LguI GCTCTTC 1 cut(s) 332
LpnPI CCDG 9 cut(s) 147, 199, 203, 255, 274, 319, 423, 476, 491
Lsp1109I GCAGC 2 cut(s) 231, 360
MaeIII GTNAC 2 cut(s) 157, 458
MboII GAAGA 4 cut(s) 137, 245, 319, 322
MfeI CAATTG 1 cut(s) 135
MhlI GDGCHC 2 cut(s) 327, 473
MluCI AATT 2 cut(s) 135, 403
MnlI CCTC 2 cut(s) 37, 444
MroXI GAANNNNTTC 2 cut(s) 114, 354
MspI CCGG 1 cut(s) 186
MunI CAATTG 1 cut(s) 135
MwoI GCNNNNNNNGC 1 cut(s) 90
NlaIII CATG 1 cut(s) 362
NlaIV GGNNCC 1 cut(s) 7
NmeAIII GCCGAG 1 cut(s) 176
PaeR7I CTCGAG 1 cut(s) 248
PagI TCATGA 1 cut(s) 358
PciSI GCTCTTC 1 cut(s) 332
PdmI GAANNNNTTC 2 cut(s) 114, 354
PfeI GAWTC 1 cut(s) 236
PkrI GCNGC 2 cut(s) 221, 375
PshAI GACNNNNGTC 1 cut(s) 429
PspN4I GGNNCC 1 cut(s) 7
PspXI VCTCGAGB 1 cut(s) 248
PstI CTGCAG 1 cut(s) 378
RsaI GTAC 2 cut(s) 114, 254
RsaNI GTAC 2 cut(s) 113, 253
SapI GCTCTTC 1 cut(s) 332
SatI GCNGC 2 cut(s) 220, 374
ScaI AGTACT 1 cut(s) 114
SduI GDGCHC 2 cut(s) 327, 473
SetI ASST 4 cut(s) 224, 249, 324, 375
SfcI CTRYAG 1 cut(s) 374
Sfr274I CTCGAG 1 cut(s) 248
SlaI CTCGAG 1 cut(s) 248
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
Sse9I AATT 2 cut(s) 135, 403
TaaI ACNGT 1 cut(s) 475
TaqI TCGA 3 cut(s) 249, 348, 423
TasI AATT 2 cut(s) 135, 403
TatI WGTACW 2 cut(s) 112, 252
TfiI GAWTC 1 cut(s) 236
TscAI CASTG 2 cut(s) 443, 478
TseI GCWGC 2 cut(s) 219, 373
TspDTI ATGAA 4 cut(s) 123, 228, 347, 474
TspGWI ACGGA 3 cut(s) 24, 225, 302
TspRI CASTG 2 cut(s) 443, 478
XapI RAATTY 1 cut(s) 403
XhoI CTCGAG 1 cut(s) 248
XmnI GAANNNNTTC 2 cut(s) 114, 354
ZrmI AGTACT 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.