Prupe.8G263400_v2.0.a1

Protein of unknown function, DUF538

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0015829
Physical Location & Seq
Reverse (-)
22141474 .. 22143240
1767 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G263400.1

Sequence Viewer

Length: 621 bp
ATGTCCTCTCCTCTGTTTGCCAGCCTCACTCACTCTCCGCCTAACCAAACACCGCCCACAAAGCTTCTTCAAGACTGGGAATTCATGGCTTCCTTCTCTCAGTCTCATGCAAGAAAGCCCACATCTCCGTTACTGGTGTTTCCCTTTGCACTTCTCCTGTTCATTCTCTCATCCTCTGCCTATAGCGACGACAAGCTATCAGCATACGAGATGCTTCAACAATATGACTTCCCAATCGGCCTTCTTCCCAAAGGAGTAACAGGCTACGAGCTAGACAGGGACACCGGCAATTTCAAGGCGTATTTCAACGGAACCTGCAGCTTCTCCCTTGAAAACTCGTATCAGCTCAGGTACAGATCCACCATAACTGGTGTTTTGTCCAAAGACAGGCTCAAAAATTTGAAGGGTGTGAGTGTGAAGGTGCTCTTCTTCTGGATCGACATAGTGGAAGTGGTTCGAAATGGCGATGAGCTACAATTCTCCGTGGGGATTGCTTCAGCCGACTTTTCAATCGACAACTTTGAGGAGAGCCCGCAGTGTGGCTGTGGATTTGCTTGTCAACAGTTGGTGAGTAGCGCCGTGCCATCACATTCGGTGAGAGCACTTATGAAGTCTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

207

Amino Acids

22.89

Weight (kDa)

5.9

Isoelectric Point (pI)

36.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015829)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02360
fragaria_vesca FvH4_2g25890
malus_domestica MD03G1290400.v1.1 MD11G1308100.v1.1
prunus_persica Prupe.8G263400_v2.0.a1
pyrus_communis pycom03g22970
rosa_chinensis RchiOBHm_Chr6g0294221
rosa_laevigata RLG00000011889
rosa_roxburghii Rroxscaffold_7G00173540
rosa_rugosa Rorug06G0242600
rosa_samantha Rh6AG354800 Rh6BG361700 Rh6CG369000 Rh6DG355800
rosa_wichuraiana Rw6G030920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 323
AciI CCGC 3 cut(s) 38, 53, 533
AclWI GGATC 2 cut(s) 351, 443
AcsI RAATTY 2 cut(s) 80, 397
AcuI CTGAAG 1 cut(s) 480
AfaI GTAC 1 cut(s) 353
AfiI CCNNNNNNNGG 2 cut(s) 387, 539
AgsI TTSAA 7 cut(s) 71, 218, 295, 307, 332, 403, 510
AluBI AGCT 6 cut(s) 64, 196, 271, 321, 346, 472
AluI AGCT 6 cut(s) 64, 196, 271, 321, 346, 472
Alw21I GWGCWC 2 cut(s) 426, 604
Alw26I GTCTC 1 cut(s) 108
AlwI GGATC 2 cut(s) 351, 443
AoxI GGCC 1 cut(s) 238
ApeKI GCWGC 1 cut(s) 318
ApoI RAATTY 2 cut(s) 80, 397
Asp700I GAANNNNTTC 1 cut(s) 453
AspLEI GCGC 1 cut(s) 578
AsuHPI GGTGA 2 cut(s) 580, 607
AsuII TTCGAA 1 cut(s) 457
BanII GRGCYC 1 cut(s) 533
Bbv12I GWGCWC 2 cut(s) 426, 604
BbvI GCAGC 1 cut(s) 330
BccI CCATC 1 cut(s) 592
BceAI ACGGC 1 cut(s) 563
BcoDI GTCTC 1 cut(s) 108
BfaI CTAG 1 cut(s) 272
BfmI CTRYAG 2 cut(s) 181, 316
BfoI RGCGCY 1 cut(s) 579
BfuAI ACCTGC 1 cut(s) 323
BisI GCNGC 1 cut(s) 319
BlsI GCNGC 1 cut(s) 320
BmiI GGNNCC 1 cut(s) 313
BmrI ACTGGG 1 cut(s) 85
BmsI GCATC 1 cut(s) 201
BmuI ACTGGG 1 cut(s) 85
Bpu10I CCTNAGC 1 cut(s) 347
Bpu14I TTCGAA 1 cut(s) 457
BsaJI CCNNGG 1 cut(s) 483
BsaXI ACNNNNNCTCC 2 cut(s) 19, 49
Bsc4I CCNNNNNNNGG 2 cut(s) 387, 539
Bse118I RCCGGY 1 cut(s) 284
Bse1I ACTGG 3 cut(s) 80, 138, 373
BseDI CCNNGG 1 cut(s) 483
BseGI GGATG 1 cut(s) 170
BseLI CCNNNNNNNGG 2 cut(s) 387, 539
BseMII CTCAG 2 cut(s) 113, 361
BseNI ACTGG 3 cut(s) 80, 138, 373
BseRI GAGGAG 1 cut(s) 539
BseXI GCAGC 1 cut(s) 330
BshFI GGCC 1 cut(s) 240
BsiHKAI GWGCWC 2 cut(s) 426, 604
BsiSI CCGG 1 cut(s) 285
BslFI GGGAC 1 cut(s) 293
BslI CCNNNNNNNGG 2 cut(s) 387, 539
BsmAI GTCTC 1 cut(s) 108
BsmFI GGGAC 1 cut(s) 293
BsnI GGCC 1 cut(s) 240
Bsp119I TTCGAA 1 cut(s) 457
Bsp1286I GDGCHC 3 cut(s) 426, 533, 604
Bsp143I GATC 2 cut(s) 356, 435
BspACI CCGC 3 cut(s) 38, 53, 533
BspANI GGCC 1 cut(s) 240
BspCNI CTCAG 2 cut(s) 112, 360
BspLI GGNNCC 1 cut(s) 313
BspMAI CTGCAG 1 cut(s) 320
BspMI ACCTGC 1 cut(s) 323
BspPI GGATC 2 cut(s) 351, 443
BspQI GCTCTTC 1 cut(s) 431
BspT104I TTCGAA 1 cut(s) 457
BsrFI RCCGGY 1 cut(s) 284
BsrI ACTGG 3 cut(s) 80, 138, 373
BssAI RCCGGY 1 cut(s) 284
BssECI CCNNGG 1 cut(s) 483
BssMI GATC 2 cut(s) 356, 435
Bst4CI ACNGT 1 cut(s) 564
Bst6I CTCTTC 1 cut(s) 431
BstBI TTCGAA 1 cut(s) 457
BstC8I GCNNGC 2 cut(s) 22, 533
BstDEI CTNAG 2 cut(s) 99, 347
BstDSI CCRYGG 1 cut(s) 483
BstF5I GGATG 1 cut(s) 170
BstH2I RGCGCY 1 cut(s) 579
BstHHI GCGC 1 cut(s) 578
BstKTI GATC 2 cut(s) 359, 438
BstMAI GTCTC 1 cut(s) 108
BstMBI GATC 2 cut(s) 356, 435
BstMWI GCNNNNNNNGC 1 cut(s) 61
BstSFI CTRYAG 2 cut(s) 181, 316
BstV1I GCAGC 1 cut(s) 330
BstX2I RGATCY 1 cut(s) 356
BstYI RGATCY 1 cut(s) 356
BsuRI GGCC 1 cut(s) 240
BtgI CCRYGG 1 cut(s) 483
BtgZI GCGATG 1 cut(s) 480
BtsCI GGATG 1 cut(s) 170
BtsI GCAGTG 1 cut(s) 542
BtsIMutI CAGTG 1 cut(s) 542
BveI ACCTGC 1 cut(s) 323
Cac8I GCNNGC 2 cut(s) 22, 533
CfoI GCGC 1 cut(s) 578
Cfr10I RCCGGY 1 cut(s) 284
Csp6I GTAC 1 cut(s) 352
CviAII CATG 2 cut(s) 85, 107
CviQI GTAC 1 cut(s) 352
DdeI CTNAG 2 cut(s) 99, 347
DpnI GATC 2 cut(s) 358, 437
DpnII GATC 2 cut(s) 356, 435
Eam1104I CTCTTC 1 cut(s) 431
EarI CTCTTC 1 cut(s) 431
EciI GGCGGA 1 cut(s) 27
Eco24I GRGCYC 1 cut(s) 533
Eco57I CTGAAG 1 cut(s) 480
EcoRI GAATTC 1 cut(s) 80
EcoT38I GRGCYC 1 cut(s) 533
FaeI CATG 2 cut(s) 88, 110
FaiI YATR 8 cut(s) 86, 108, 183, 205, 225, 365, 443, 608
FalI AAGNNNNNCTT 2 cut(s) 410, 442
FaqI GGGAC 1 cut(s) 293
FatI CATG 2 cut(s) 84, 106
FauI CCCGC 1 cut(s) 540
Fnu4HI GCNGC 1 cut(s) 319
FokI GGATG 1 cut(s) 157
FriOI GRGCYC 1 cut(s) 533
Fsp4HI GCNGC 1 cut(s) 319
FspBI CTAG 1 cut(s) 272
GlaI GCGC 1 cut(s) 577
GluI GCNGC 1 cut(s) 319
HaeII RGCGCY 1 cut(s) 579
HaeIII GGCC 1 cut(s) 240
HapII CCGG 1 cut(s) 285
HhaI GCGC 1 cut(s) 578
Hin1II CATG 2 cut(s) 88, 110
Hin6I GCGC 1 cut(s) 576
HinP1I GCGC 1 cut(s) 576
HincII GTYRAC 1 cut(s) 560
HindII GTYRAC 1 cut(s) 560
HindIII AAGCTT 1 cut(s) 62
HpaII CCGG 1 cut(s) 285
HphI GGTGA 2 cut(s) 580, 607
Hpy166II GTNNAC 1 cut(s) 560
Hpy188III TCNNGA 2 cut(s) 71, 433
Hpy8I GTNNAC 1 cut(s) 560
Hpy99I CGWCG 1 cut(s) 191
HpyAV CCTTC 4 cut(s) 103, 251, 397, 412
HpyCH4III ACNGT 1 cut(s) 564
HpyCH4V TGCA 3 cut(s) 110, 149, 318
HpyF10VI GCNNNNNNNGC 1 cut(s) 61
HpyF3I CTNAG 2 cut(s) 99, 347
Hsp92II CATG 2 cut(s) 88, 110
HspAI GCGC 1 cut(s) 576
Kzo9I GATC 2 cut(s) 356, 435
LguI GCTCTTC 1 cut(s) 431
Lsp1109I GCAGC 1 cut(s) 330
LweI GCATC 1 cut(s) 201
MaeI CTAG 1 cut(s) 272
MaeIII GTNAC 2 cut(s) 129, 256
MalI GATC 2 cut(s) 358, 437
MboI GATC 2 cut(s) 356, 435
MboII GAAGA 4 cut(s) 59, 236, 418, 421
MflI RGATCY 1 cut(s) 356
MhlI GDGCHC 3 cut(s) 426, 533, 604
MluCI AATT 4 cut(s) 80, 289, 397, 476
MnlI CCTC 5 cut(s) 16, 21, 35, 184, 517
MroXI GAANNNNTTC 1 cut(s) 453
MspI CCGG 1 cut(s) 285
MwoI GCNNNNNNNGC 1 cut(s) 61
NdeII GATC 2 cut(s) 356, 435
NlaIII CATG 2 cut(s) 88, 110
NlaIV GGNNCC 1 cut(s) 313
NspV TTCGAA 1 cut(s) 457
PciSI GCTCTTC 1 cut(s) 431
PdmI GAANNNNTTC 1 cut(s) 453
PkrI GCNGC 1 cut(s) 320
PspN4I GGNNCC 1 cut(s) 313
PstI CTGCAG 1 cut(s) 320
PsuI RGATCY 1 cut(s) 356
RsaI GTAC 1 cut(s) 353
RsaNI GTAC 1 cut(s) 352
SapI GCTCTTC 1 cut(s) 431
SatI GCNGC 1 cut(s) 319
Sau3AI GATC 2 cut(s) 356, 435
SduI GDGCHC 3 cut(s) 426, 533, 604
SetI ASST 9 cut(s) 66, 198, 273, 317, 323, 348, 353, 423, 474
SfaNI GCATC 1 cut(s) 201
SfcI CTRYAG 2 cut(s) 181, 316
SfuI TTCGAA 1 cut(s) 457
Sse9I AATT 4 cut(s) 80, 289, 397, 476
SsiI CCGC 3 cut(s) 38, 53, 533
SspMI CTAG 1 cut(s) 272
TaaI ACNGT 1 cut(s) 564
TaqI TCGA 3 cut(s) 438, 457, 513
TasI AATT 4 cut(s) 80, 289, 397, 476
TscAI CASTG 1 cut(s) 542
TseI GCWGC 1 cut(s) 318
TspDTI ATGAA 2 cut(s) 73, 151
TspGWI ACGGA 3 cut(s) 117, 324, 472
TspRI CASTG 1 cut(s) 542
XapI RAATTY 2 cut(s) 80, 397
XmnI GAANNNNTTC 1 cut(s) 453
XspI CTAG 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.