AT4G02670

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0009751
Physical Location & Seq
Reverse (-)
1176000 .. 1178624
2625 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G02670.2

Sequence Viewer

Length: 1209 bp
ATGTTTTCTTCTCATTCCTTGTCCTATAAGCTAAGCTCTTTGTCTACTGAAGCAAGTGCCTCTTCTGGTAACAACACACTCAGTACCATCCAAGAATTCAGTGGCTTTCACAATGTGATTTCTAGTGTTTGTACACACACAGAGACTCACAAGCCTAAGAAAAAGAGAGGCCTTCCTGGAAATCCTGATCCAGATGCAGAAGTGATCGCATTATCACCAAAGACACTTCTTGCAACAAACAGATTCGTTTGTGAGATATGCAACAAAGGGTTTCAAAGAGATCAGAATCTACAGCTTCACAGGAGAGGCCACAATCTTCCATGGAAGCTGAAACAGAAGAACACCAAAGAACAACAAAAGAAGAAAGTCTACGTGTGCCCAGAGACAAACTGTGCTCATCACCATCCATCTAGAGCTCTTGGGGATCTCACAGGGATCAAGAAACACTTTTGCAGGAAACATGGAGAGAAGAAATGGAAATGTGAAAAGTGTTCAAAGTTCTATGCTGTTCAATCTGATTGGAAAGCTCATACCAAGATCTGTGGTACTAGAGATTATAGATGTGACTGCGGCACTCTTTTCTCGAGGAAAGACACTTTCATAACGCATAGAGCGTTTTGTGATGCATTAGCAGAAGAAAGTGCAAGACTCCACTCAACTTCTTCCTCCAATCTCACAAACCCTAACCCTAATTTCCAAGGCCATCATTTTATGTTCAATAAATCTTCCTCCTTGCTCTTCACGTCATCACCTCTTTTCATCGAACCATCACTTTCCACCGCCGCTCTTTCAACGCCTCCAACGGCAGCTCTTTCCGCGACGGCTCTTCTCCAAAAGGCCACCTCTCTCAGCTCCACTACTTTCGGCGGCGGAGGACAGACTCGATCCATTGGTCATCACCGACATTTGACGAACGTCAACGAGTTTCTTGGTGTTGACCGAGTCATGATGACGTCAGCTTCTTCGTCTGAGTACGACCAGTTAGTTGTTGATGGGTTTACGTCCACGTGGCAGAAAGCTGACCGTTTGACCAGAGACTTTCTTGGACTCACGGGTCATGGGGGACACGTTAGCGTCAGACCTGGGGATATGCTAGAGTACGCGGGTGGAGTGGCGTTTCCTATGTCGGCGTACGATACCGAATCTCATGATCACTCGTTTCAGAAGGCTTACGATCATCTGGGATTCTCAGGGGCCCATCGTATGTAA

Protein Analysis

402

Amino Acids

44.51

Weight (kDa)

9.23

Isoelectric Point (pI)

36.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2H2-2nd_BIRD-IDD PF22996 122 - 156 7e-20 BIRD-IDD transcription factor, second C2H2 zinc finger
C2CH-3rd_BIRD-IDD PF22995 160 - 184 3e-15 BIRD-IDD transcription factor, third C2HC zinc finger
C2CH-4th_BIRD-IDD PF22992 188 - 226 3.1e-22 BIRD-IDD transcription factor, fourth C2HC zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1053
AatII GACGTC 1 cut(s) 956
AccBSI CCGCTC 1 cut(s) 785
AccI GTMKAC 2 cut(s) 44, 369
AccII CGCG 2 cut(s) 818, 1103
AciI CCGC 7 cut(s) 570, 780, 783, 816, 867, 870, 1103
AclWI GGATC 4 cut(s) 182, 432, 443, 879
AcsI RAATTY 1 cut(s) 95
AcuI CTGAAG 1 cut(s) 69
AcvI CACGTG 1 cut(s) 1008
AcyI GRCGYC 1 cut(s) 953
AdeI CACNNNGTG 1 cut(s) 115
AfaI GTAC 6 cut(s) 85, 133, 547, 974, 1100, 1133
AflIII ACRYGT 2 cut(s) 372, 1066
AgsI TTSAA 5 cut(s) 275, 495, 512, 718, 792
AjiI CACGTC 1 cut(s) 744
AjnI CCWGG 2 cut(s) 175, 1081
Alw21I GWGCWC 2 cut(s) 397, 418
Alw26I GTCTC 3 cut(s) 137, 377, 1029
AlwI GGATC 4 cut(s) 182, 432, 443, 879
Ama87I CYCGRG 1 cut(s) 583
AoxI GGCC 5 cut(s) 169, 307, 700, 837, 1194
ApaI GGGCCC 1 cut(s) 1198
ApeKI GCWGC 1 cut(s) 806
ApoI RAATTY 1 cut(s) 95
AspS9I GGNCC 2 cut(s) 1194, 1195
AsuHPI GGTGA 4 cut(s) 207, 392, 741, 890
AvaI CYCGRG 1 cut(s) 583
BaeGI GKGCMC 2 cut(s) 380, 1198
BanII GRGCYC 2 cut(s) 418, 1198
BarI GAAGNNNNNNTAC 2 cut(s) 353, 385
BbrPI CACGTG 1 cut(s) 1008
Bbv12I GWGCWC 2 cut(s) 397, 418
BbvI GCAGC 1 cut(s) 818
BccI CCATC 7 cut(s) 95, 411, 415, 711, 775, 986, 1206
BceAI ACGGC 2 cut(s) 819, 837
BciT130I CCWGG 2 cut(s) 177, 1083
BclI TGATCA 1 cut(s) 1150
BcoDI GTCTC 3 cut(s) 137, 377, 1029
BfaI CTAG 4 cut(s) 123, 411, 549, 1094
BfmI CTRYAG 1 cut(s) 290
BglII AGATCT 1 cut(s) 537
BisI GCNGC 4 cut(s) 571, 783, 807, 868
BlpI GCTNAGC 1 cut(s) 32
BlsI GCNGC 4 cut(s) 572, 784, 808, 869
Bme1390I CCNGG 2 cut(s) 177, 1083
BmeT110I CYCGRG 1 cut(s) 583
BmgBI CACGTC 1 cut(s) 744
BmgT120I GGNCC 2 cut(s) 1194, 1195
BmiI GGNNCC 2 cut(s) 1195, 1196
BmrFI CCNGG 2 cut(s) 177, 1083
BmsI GCATC 2 cut(s) 184, 613
BoxI GACNNNNGTC 1 cut(s) 914
Bpu1102I GCTNAGC 1 cut(s) 32
BsaAI YACGTR 2 cut(s) 373, 1008
BsaBI GATNNNNATC 1 cut(s) 285
BsaHI GRCGYC 1 cut(s) 953
BsaJI CCNNGG 3 cut(s) 320, 697, 1082
Bse1I ACTGG 1 cut(s) 979
Bse8I GATNNNNATC 1 cut(s) 285
BseBI CCWGG 2 cut(s) 177, 1083
BseDI CCNNGG 3 cut(s) 320, 697, 1082
BseGI GGATG 2 cut(s) 87, 403
BseJI GATNNNNATC 1 cut(s) 285
BseMII CTCAG 4 cut(s) 94, 862, 960, 1203
BseNI ACTGG 1 cut(s) 979
BseSI GKGCMC 2 cut(s) 380, 1198
BseXI GCAGC 1 cut(s) 818
Bsh1236I CGCG 2 cut(s) 818, 1103
BshFI GGCC 5 cut(s) 171, 309, 702, 839, 1196
BsiHKAI GWGCWC 2 cut(s) 397, 418
BsiHKCI CYCGRG 1 cut(s) 583
BsiWI CGTACG 1 cut(s) 1131
BslFI GGGAC 1 cut(s) 1077
BsmAI GTCTC 3 cut(s) 137, 377, 1029
BsmFI GGGAC 1 cut(s) 1077
BsnI GGCC 5 cut(s) 171, 309, 702, 839, 1196
BsoBI CYCGRG 1 cut(s) 583
Bsp120I GGGCCC 1 cut(s) 1194
Bsp1286I GDGCHC 4 cut(s) 380, 397, 418, 1198
Bsp1407I TGTACA 1 cut(s) 131
Bsp143I GATC 9 cut(s) 187, 204, 280, 424, 435, 537, 884, 1150, 1174
Bsp1720I GCTNAGC 1 cut(s) 32
Bsp19I CCATGG 1 cut(s) 320
BspACI CCGC 7 cut(s) 570, 780, 783, 816, 867, 870, 1103
BspANI GGCC 5 cut(s) 171, 309, 702, 839, 1196
BspCNI CTCAG 4 cut(s) 93, 861, 961, 1202
BspFNI CGCG 2 cut(s) 818, 1103
BspHI TCATGA 2 cut(s) 945, 1147
BspLI GGNNCC 2 cut(s) 1195, 1196
BspPI GGATC 4 cut(s) 182, 432, 443, 879
BspQI GCTCTTC 2 cut(s) 743, 831
BsrBI CCGCTC 1 cut(s) 785
BsrGI TGTACA 1 cut(s) 131
BsrI ACTGG 1 cut(s) 979
BssECI CCNNGG 3 cut(s) 320, 697, 1082
BssMI GATC 9 cut(s) 187, 204, 280, 424, 435, 537, 884, 1150, 1174
BssNI GRCGYC 1 cut(s) 953
BssT1I CCWWGG 2 cut(s) 320, 697
Bst2UI CCWGG 2 cut(s) 177, 1083
Bst4CI ACNGT 2 cut(s) 392, 1025
Bst6I CTCTTC 3 cut(s) 67, 743, 831
BstACI GRCGYC 1 cut(s) 953
BstAUI TGTACA 1 cut(s) 131
BstBAI YACGTR 2 cut(s) 373, 1008
BstDEI CTNAG 6 cut(s) 32, 80, 156, 848, 969, 1189
BstDSI CCRYGG 1 cut(s) 320
BstF5I GGATG 2 cut(s) 87, 403
BstFNI CGCG 2 cut(s) 818, 1103
BstKTI GATC 9 cut(s) 190, 207, 283, 427, 438, 540, 887, 1153, 1177
BstMAI GTCTC 3 cut(s) 137, 377, 1029
BstMBI GATC 9 cut(s) 187, 204, 280, 424, 435, 537, 884, 1150, 1174
BstMWI GCNNNNNNNGC 1 cut(s) 815
BstNI CCWGG 2 cut(s) 177, 1083
BstPAI GACNNNNGTC 1 cut(s) 914
BstSCI CCNGG 2 cut(s) 175, 1081
BstSFI CTRYAG 1 cut(s) 290
BstSLI GKGCMC 2 cut(s) 380, 1198
BstUI CGCG 2 cut(s) 818, 1103
BstV1I GCAGC 1 cut(s) 818
BstX2I RGATCY 2 cut(s) 424, 537
BstYI RGATCY 2 cut(s) 424, 537
BsuRI GGCC 5 cut(s) 171, 309, 702, 839, 1196
BtgI CCRYGG 1 cut(s) 320
BtrI CACGTC 1 cut(s) 744
BtsCI GGATG 2 cut(s) 87, 403
BtsIMutI CAGTG 1 cut(s) 106
CciI TCATGA 2 cut(s) 945, 1147
Cfr13I GGNCC 2 cut(s) 1194, 1195
CseI GACGC 1 cut(s) 1063
Csp6I GTAC 6 cut(s) 84, 132, 546, 973, 1099, 1132
CspCI CAANNNNNGTGG 2 cut(s) 523, 558
CviAII CATG 5 cut(s) 321, 461, 946, 1058, 1148
CviQI GTAC 6 cut(s) 84, 132, 546, 973, 1099, 1132
DdeI CTNAG 6 cut(s) 32, 80, 156, 848, 969, 1189
DpnI GATC 9 cut(s) 189, 206, 282, 426, 437, 539, 886, 1152, 1176
DpnII GATC 9 cut(s) 187, 204, 280, 424, 435, 537, 884, 1150, 1174
DraIII CACNNNGTG 1 cut(s) 115
DrdI GACNNNNNNGTC 1 cut(s) 1053
DseDI GACNNNNNNGTC 1 cut(s) 1053
Eam1104I CTCTTC 3 cut(s) 67, 743, 831
EarI CTCTTC 3 cut(s) 67, 743, 831
EciI GGCGGA 1 cut(s) 885
Ecl136II GAGCTC 1 cut(s) 416
Eco130I CCWWGG 2 cut(s) 320, 697
Eco147I AGGCCT 1 cut(s) 171
Eco24I GRGCYC 2 cut(s) 418, 1198
Eco53kI GAGCTC 1 cut(s) 416
Eco57I CTGAAG 1 cut(s) 69
Eco72I CACGTG 1 cut(s) 1008
Eco88I CYCGRG 1 cut(s) 583
EcoICRI GAGCTC 1 cut(s) 416
EcoO109I RGGNCCY 1 cut(s) 1194
EcoRI GAATTC 1 cut(s) 95
EcoRII CCWGG 2 cut(s) 175, 1081
EcoT14I CCWWGG 2 cut(s) 320, 697
EcoT22I ATGCAT 1 cut(s) 628
EcoT38I GRGCYC 2 cut(s) 418, 1198
ErhI CCWWGG 2 cut(s) 320, 697
FaeI CATG 5 cut(s) 324, 464, 949, 1061, 1151
FalI AAGNNNNNCTT 4 cut(s) 46, 78, 431, 463
FaqI GGGAC 1 cut(s) 1077
FatI CATG 5 cut(s) 320, 460, 945, 1057, 1147
FauI CCCGC 1 cut(s) 1096
FbaI TGATCA 1 cut(s) 1150
FblI GTMKAC 2 cut(s) 44, 369
Fnu4HI GCNGC 4 cut(s) 571, 783, 807, 868
FokI GGATG 2 cut(s) 74, 390
FriOI GRGCYC 2 cut(s) 418, 1198
Fsp4HI GCNGC 4 cut(s) 571, 783, 807, 868
FspBI CTAG 4 cut(s) 123, 411, 549, 1094
GluI GCNGC 4 cut(s) 571, 783, 807, 868
HaeIII GGCC 5 cut(s) 171, 309, 702, 839, 1196
HgaI GACGC 1 cut(s) 1063
Hin1I GRCGYC 1 cut(s) 953
Hin1II CATG 5 cut(s) 324, 464, 949, 1061, 1151
HincII GTYRAC 2 cut(s) 919, 937
HindII GTYRAC 2 cut(s) 919, 937
HinfI GANTC 9 cut(s) 145, 243, 286, 648, 880, 942, 1047, 1142, 1185
HphI GGTGA 4 cut(s) 207, 392, 741, 890
Hpy166II GTNNAC 7 cut(s) 45, 134, 370, 919, 937, 999, 1005
Hpy188I TCNGA 5 cut(s) 285, 517, 970, 1079, 1164
Hpy188III TCNNGA 7 cut(s) 185, 191, 411, 439, 583, 946, 1148
Hpy8I GTNNAC 7 cut(s) 45, 134, 370, 919, 937, 999, 1005
Hpy99I CGWCG 1 cut(s) 823
HpyAV CCTTC 2 cut(s) 182, 1159
HpyCH4III ACNGT 2 cut(s) 392, 1025
HpyCH4IV ACGT 7 cut(s) 372, 743, 915, 953, 1001, 1007, 1068
HpyCH4V TGCA 6 cut(s) 197, 233, 261, 453, 626, 644
HpyF10VI GCNNNNNNNGC 1 cut(s) 815
HpyF3I CTNAG 6 cut(s) 32, 80, 156, 848, 969, 1189
HpySE526I ACGT 7 cut(s) 372, 743, 915, 953, 1001, 1007, 1068
Hsp92I GRCGYC 1 cut(s) 953
Hsp92II CATG 5 cut(s) 324, 464, 949, 1061, 1151
Ksp22I TGATCA 1 cut(s) 1150
Kzo9I GATC 9 cut(s) 187, 204, 280, 424, 435, 537, 884, 1150, 1174
LguI GCTCTTC 2 cut(s) 743, 831
LmnI GCTCC 1 cut(s) 857
Lsp1109I GCAGC 1 cut(s) 818
LweI GCATC 2 cut(s) 184, 613
MaeI CTAG 4 cut(s) 123, 411, 549, 1094
MaeII ACGT 7 cut(s) 372, 743, 915, 953, 1001, 1007, 1068
MaeIII GTNAC 2 cut(s) 68, 563
MalI GATC 9 cut(s) 189, 206, 282, 426, 437, 539, 886, 1152, 1176
MbiI CCGCTC 1 cut(s) 785
MboI GATC 9 cut(s) 187, 204, 280, 424, 435, 537, 884, 1150, 1174
MflI RGATCY 2 cut(s) 424, 537
MhlI GDGCHC 4 cut(s) 380, 397, 418, 1198
MluCI AATT 2 cut(s) 95, 691
MlyI GAGTC 5 cut(s) 139, 642, 874, 951, 1041
MmeI TCCRAC 1 cut(s) 824
Mph1103I ATGCAT 1 cut(s) 628
MspR9I CCNGG 2 cut(s) 177, 1083
MvaI CCWGG 2 cut(s) 177, 1083
MvnI CGCG 2 cut(s) 818, 1103
MwoI GCNNNNNNNGC 1 cut(s) 815
NcoI CCATGG 1 cut(s) 320
NdeII GATC 9 cut(s) 187, 204, 280, 424, 435, 537, 884, 1150, 1174
NlaIII CATG 5 cut(s) 324, 464, 949, 1061, 1151
NlaIV GGNNCC 2 cut(s) 1195, 1196
NmuCI GTSAC 1 cut(s) 563
NsiI ATGCAT 1 cut(s) 628
PaeR7I CTCGAG 1 cut(s) 583
PagI TCATGA 2 cut(s) 945, 1147
PceI AGGCCT 1 cut(s) 171
PciSI GCTCTTC 2 cut(s) 743, 831
PcsI WCGNNNNNNNCGW 1 cut(s) 611
PfeI GAWTC 4 cut(s) 243, 286, 1142, 1185
Pfl23II CGTACG 1 cut(s) 1131
PflFI GACNNNGTC 1 cut(s) 941
PfoI TCCNGGA 1 cut(s) 175
PkrI GCNGC 4 cut(s) 572, 784, 808, 869
PleI GAGTC 5 cut(s) 139, 642, 874, 950, 1041
PmaCI CACGTG 1 cut(s) 1008
PmlI CACGTG 1 cut(s) 1008
PpsI GAGTC 5 cut(s) 139, 642, 874, 950, 1041
Ppu21I YACGTR 2 cut(s) 373, 1008
PshAI GACNNNNGTC 1 cut(s) 914
Psp124BI GAGCTC 1 cut(s) 418
Psp6I CCWGG 2 cut(s) 175, 1081
PspCI CACGTG 1 cut(s) 1008
PspGI CCWGG 2 cut(s) 175, 1081
PspLI CGTACG 1 cut(s) 1131
PspN4I GGNNCC 2 cut(s) 1195, 1196
PspOMI GGGCCC 1 cut(s) 1194
PspPI GGNCC 2 cut(s) 1194, 1195
PsuI RGATCY 2 cut(s) 424, 537
PsyI GACNNNGTC 1 cut(s) 941
RsaI GTAC 6 cut(s) 85, 133, 547, 974, 1100, 1133
RsaNI GTAC 6 cut(s) 84, 132, 546, 973, 1099, 1132
SacI GAGCTC 1 cut(s) 418
SapI GCTCTTC 2 cut(s) 743, 831
SatI GCNGC 4 cut(s) 571, 783, 807, 868
Sau3AI GATC 9 cut(s) 187, 204, 280, 424, 435, 537, 884, 1150, 1174
Sau96I GGNCC 2 cut(s) 1194, 1195
SchI GAGTC 5 cut(s) 139, 642, 874, 951, 1041
ScrFI CCNGG 2 cut(s) 177, 1083
SduI GDGCHC 4 cut(s) 380, 397, 418, 1198
SfaNI GCATC 2 cut(s) 184, 613
SfcI CTRYAG 1 cut(s) 290
Sfr274I CTCGAG 1 cut(s) 583
SlaI CTCGAG 1 cut(s) 583
SmlI CTYRAG 1 cut(s) 583
SmoI CTYRAG 1 cut(s) 583
Sse9I AATT 2 cut(s) 95, 691
SseBI AGGCCT 1 cut(s) 171
SsiI CCGC 7 cut(s) 570, 780, 783, 816, 867, 870, 1103
SspMI CTAG 4 cut(s) 123, 411, 549, 1094
SstI GAGCTC 1 cut(s) 418
StuI AGGCCT 1 cut(s) 171
StyD4I CCNGG 2 cut(s) 175, 1081
StyI CCWWGG 2 cut(s) 320, 697
TaaI ACNGT 2 cut(s) 392, 1025
TaiI ACGT 7 cut(s) 375, 746, 918, 956, 1004, 1010, 1071
TaqI TCGA 3 cut(s) 584, 762, 883
TaqII GACCGA 1 cut(s) 954
TasI AATT 2 cut(s) 95, 691
TatI WGTACW 1 cut(s) 131
TauI GCSGC 3 cut(s) 573, 785, 870
TfiI GAWTC 4 cut(s) 243, 286, 1142, 1185
TscAI CASTG 1 cut(s) 106
TseFI GTSAC 1 cut(s) 563
TseI GCWGC 1 cut(s) 806
Tsp45I GTSAC 1 cut(s) 563
TspDTI ATGAA 2 cut(s) 589, 748
TspRI CASTG 1 cut(s) 106
Tth111I GACNNNGTC 1 cut(s) 941
XapI RAATTY 1 cut(s) 95
XbaI TCTAGA 1 cut(s) 410
XcmI CCANNNNNNNNNTGG 1 cut(s) 98
XhoI CTCGAG 1 cut(s) 583
XmiI GTMKAC 2 cut(s) 44, 369
XspI CTAG 4 cut(s) 123, 411, 549, 1094
ZraI GACGTC 1 cut(s) 954
Zsp2I ATGCAT 1 cut(s) 628
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.