RchiOBHm_Chr6g0289971

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0009751
Physical Location & Seq
Reverse (-)
53048493 .. 53052174
3682 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26013

Sequence Viewer

Length: 543 bp
ATGGCCGAGAATTGCAACAAGGGGTTCCAGAGGGACCAGAACCTCCAGCTTCACAGGAGAGGCCACAACCTGCCATGGAAGCTGAAGCAAAGGAGCAGCAAGGACTTGATCAAAAAGAGAGCCTATGTGTGCCCTGAGCCCTCTTGTGTTCATCACCACCCTTCAAGAGCACTTGGGGATCTCACAGGGATCAAGAAGCACTTTTGCAGAAAGCATGGGGAGAAGAAGTGGAAGTATGACAAGTGCTCGAAGATCTATGCTGTTCAATCTGATTGGAAAGCTCACTCCAAAACCTGTGGTACAAGAGAATATAGATGTGGCTGTGGAACCCTTTTCTCCAGGAAGGATAGCTTCATAACTCACAGAGCCTTTTGTGATGCTCTGGCTGAAGAAAGTGCAAGGCTCTCAGCAAGCCAATTAGCTATTGCCACCACACCTCAAATCTCTCTCTCTCTTCCCTTTCCCAAACCACTCTCACTTCACAAACCCACCCCCATTACCATTCACCACCCTCTCTCCCTGGGACCCACCCCACAACCCTAA

Protein Analysis

180

Amino Acids

20.45

Weight (kDa)

9.82

Isoelectric Point (pI)

44.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2H2-2nd_BIRD-IDD PF22996 38 - 72 2.4e-21 BIRD-IDD transcription factor, second C2H2 zinc finger
C2CH-3rd_BIRD-IDD PF22995 76 - 100 3.2e-12 BIRD-IDD transcription factor, third C2HC zinc finger
C2CH-4th_BIRD-IDD PF22992 103 - 140 1.9e-23 BIRD-IDD transcription factor, fourth C2HC zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 78
AclWI GGATC 2 cut(s) 186, 197
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 2 cut(s) 104, 408
AfaI GTAC 1 cut(s) 301
AgsI TTSAA 2 cut(s) 165, 266
AjnI CCWGG 2 cut(s) 338, 519
AluBI AGCT 5 cut(s) 49, 82, 281, 351, 422
AluI AGCT 5 cut(s) 49, 82, 281, 351, 422
Alw21I GWGCWC 2 cut(s) 172, 248
AlwI GGATC 2 cut(s) 186, 197
AoxI GGCC 2 cut(s) 3, 61
ApeKI GCWGC 1 cut(s) 96
AspS9I GGNCC 2 cut(s) 34, 524
AsuHPI GGTGA 2 cut(s) 146, 497
AvaII GGWCC 2 cut(s) 34, 524
BaeGI GKGCMC 1 cut(s) 134
BanII GRGCYC 1 cut(s) 141
Bbv12I GWGCWC 2 cut(s) 172, 248
BbvI GCAGC 1 cut(s) 108
BciT130I CCWGG 2 cut(s) 340, 521
BclI TGATCA 1 cut(s) 108
BfuAI ACCTGC 1 cut(s) 78
BglII AGATCT 1 cut(s) 252
BisI GCNGC 1 cut(s) 97
BlsI GCNGC 1 cut(s) 98
Bme1390I CCNGG 2 cut(s) 340, 521
Bme18I GGWCC 2 cut(s) 34, 524
BmgT120I GGNCC 2 cut(s) 34, 524
BmiI GGNNCC 5 cut(s) 26, 35, 328, 525, 526
BmrFI CCNGG 2 cut(s) 340, 521
BmsI GCATC 1 cut(s) 367
BpmI CTGGAG 2 cut(s) 29, 322
Bpu10I CCTNAGC 1 cut(s) 135
BsaJI CCNNGG 3 cut(s) 74, 519, 520
BsaXI ACNNNNNCTCC 4 cut(s) 212, 242, 500, 530
BseBI CCWGG 2 cut(s) 340, 521
BseDI CCNNGG 3 cut(s) 74, 519, 520
BseMII CTCAG 2 cut(s) 126, 420
BseSI GKGCMC 1 cut(s) 134
BseXI GCAGC 1 cut(s) 108
BshFI GGCC 2 cut(s) 5, 63
BsiHKAI GWGCWC 2 cut(s) 172, 248
BslFI GGGAC 2 cut(s) 47, 537
BsmFI GGGAC 2 cut(s) 47, 537
BsnI GGCC 2 cut(s) 5, 63
Bsp1286I GDGCHC 4 cut(s) 134, 141, 172, 248
Bsp143I GATC 4 cut(s) 108, 178, 189, 252
Bsp19I CCATGG 1 cut(s) 74
BspANI GGCC 2 cut(s) 5, 63
BspCNI CTCAG 2 cut(s) 127, 419
BspLI GGNNCC 5 cut(s) 26, 35, 328, 525, 526
BspMI ACCTGC 1 cut(s) 78
BspPI GGATC 2 cut(s) 186, 197
BssECI CCNNGG 3 cut(s) 74, 519, 520
BssMI GATC 4 cut(s) 108, 178, 189, 252
BssT1I CCWWGG 1 cut(s) 74
Bst2UI CCWGG 2 cut(s) 340, 521
Bst6I CTCTTC 1 cut(s) 459
BstC8I GCNNGC 1 cut(s) 412
BstDEI CTNAG 2 cut(s) 135, 406
BstDSI CCRYGG 1 cut(s) 74
BstKTI GATC 4 cut(s) 111, 181, 192, 255
BstMBI GATC 4 cut(s) 108, 178, 189, 252
BstMWI GCNNNNNNNGC 1 cut(s) 79
BstNI CCWGG 2 cut(s) 340, 521
BstSCI CCNGG 2 cut(s) 338, 519
BstSLI GKGCMC 1 cut(s) 134
BstV1I GCAGC 1 cut(s) 108
BstX2I RGATCY 2 cut(s) 178, 252
BstYI RGATCY 2 cut(s) 178, 252
BsuRI GGCC 2 cut(s) 5, 63
BtgI CCRYGG 1 cut(s) 74
BveI ACCTGC 1 cut(s) 78
Cac8I GCNNGC 1 cut(s) 412
Cfr13I GGNCC 2 cut(s) 34, 524
Csp6I GTAC 1 cut(s) 300
CspCI CAANNNNNGTGG 2 cut(s) 277, 312
CviAII CATG 2 cut(s) 75, 215
CviQI GTAC 1 cut(s) 300
DdeI CTNAG 2 cut(s) 135, 406
DpnI GATC 4 cut(s) 110, 180, 191, 254
DpnII GATC 4 cut(s) 108, 178, 189, 252
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 459
EarI CTCTTC 1 cut(s) 459
Eco130I CCWWGG 1 cut(s) 74
Eco24I GRGCYC 1 cut(s) 141
Eco47I GGWCC 2 cut(s) 34, 524
Eco57I CTGAAG 2 cut(s) 104, 408
EcoO109I RGGNCCY 1 cut(s) 524
EcoRII CCWGG 2 cut(s) 338, 519
EcoT14I CCWWGG 1 cut(s) 74
EcoT38I GRGCYC 1 cut(s) 141
ErhI CCWWGG 1 cut(s) 74
FaeI CATG 2 cut(s) 78, 218
FaiI YATR 7 cut(s) 76, 126, 216, 237, 258, 312, 356
FalI AAGNNNNNCTT 4 cut(s) 185, 217, 335, 367
FaqI GGGAC 2 cut(s) 47, 537
FatI CATG 2 cut(s) 74, 214
FbaI TGATCA 1 cut(s) 108
Fnu4HI GCNGC 1 cut(s) 97
FriOI GRGCYC 1 cut(s) 141
Fsp4HI GCNGC 1 cut(s) 97
GluI GCNGC 1 cut(s) 97
GsuI CTGGAG 2 cut(s) 29, 322
HaeIII GGCC 2 cut(s) 5, 63
Hin1II CATG 2 cut(s) 78, 218
HphI GGTGA 2 cut(s) 146, 497
Hpy188I TCNGA 1 cut(s) 271
Hpy188III TCNNGA 3 cut(s) 28, 165, 193
HpyAV CCTTC 2 cut(s) 171, 337
HpyCH4V TGCA 3 cut(s) 15, 207, 398
HpyF10VI GCNNNNNNNGC 1 cut(s) 79
HpyF3I CTNAG 2 cut(s) 135, 406
Hsp92II CATG 2 cut(s) 78, 218
KflI GGGWCCC 1 cut(s) 524
Ksp22I TGATCA 1 cut(s) 108
Kzo9I GATC 4 cut(s) 108, 178, 189, 252
LmnI GCTCC 1 cut(s) 93
Lsp1109I GCAGC 1 cut(s) 108
LweI GCATC 1 cut(s) 367
MalI GATC 4 cut(s) 110, 180, 191, 254
MboI GATC 4 cut(s) 108, 178, 189, 252
MboII GAAGA 4 cut(s) 235, 262, 401, 446
MflI RGATCY 2 cut(s) 178, 252
MhlI GDGCHC 4 cut(s) 134, 141, 172, 248
MluCI AATT 2 cut(s) 10, 416
MnlI CCTC 6 cut(s) 24, 53, 53, 151, 447, 522
MspR9I CCNGG 2 cut(s) 340, 521
MvaI CCWGG 2 cut(s) 340, 521
MwoI GCNNNNNNNGC 1 cut(s) 79
NcoI CCATGG 1 cut(s) 74
NdeII GATC 4 cut(s) 108, 178, 189, 252
NlaIII CATG 2 cut(s) 78, 218
NlaIV GGNNCC 5 cut(s) 26, 35, 328, 525, 526
NmeAIII GCCGAG 1 cut(s) 31
PasI CCCWGGG 1 cut(s) 520
PfoI TCCNGGA 1 cut(s) 338
PkrI GCNGC 1 cut(s) 98
PpuMI RGGWCCY 1 cut(s) 524
Psp5II RGGWCCY 1 cut(s) 524
Psp6I CCWGG 2 cut(s) 338, 519
PspGI CCWGG 2 cut(s) 338, 519
PspN4I GGNNCC 5 cut(s) 26, 35, 328, 525, 526
PspPI GGNCC 2 cut(s) 34, 524
PspPPI RGGWCCY 1 cut(s) 524
PsuI RGATCY 2 cut(s) 178, 252
RsaI GTAC 1 cut(s) 301
RsaNI GTAC 1 cut(s) 300
SatI GCNGC 1 cut(s) 97
Sau3AI GATC 4 cut(s) 108, 178, 189, 252
Sau96I GGNCC 2 cut(s) 34, 524
ScrFI CCNGG 2 cut(s) 340, 521
SduI GDGCHC 4 cut(s) 134, 141, 172, 248
SetI ASST 9 cut(s) 45, 51, 72, 84, 283, 296, 353, 424, 439
SfaNI GCATC 1 cut(s) 367
SinI GGWCC 2 cut(s) 34, 524
Sse9I AATT 2 cut(s) 10, 416
StyD4I CCNGG 2 cut(s) 338, 519
StyI CCWWGG 1 cut(s) 74
TaqI TCGA 1 cut(s) 248
TasI AATT 2 cut(s) 10, 416
TseI GCWGC 1 cut(s) 96
TspDTI ATGAA 2 cut(s) 140, 343
VpaK11BI GGWCC 2 cut(s) 34, 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.