Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029149.1

Orthogroup ID

OG0009751

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1322

Gene Structure 1322 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029149.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

caaccgccgcagaagattaaaaagaagagaagcctccctggaaacccagaccctgatgccgaagtgatagcattatcccctaaaacgctcctggccacgaacagattcgtggccgagaattgcaacagggggttccagagggaccagaacctccaacttcacaggagaggccacaacctgccatggaagctgaagcaaagaagcagcaaagacttgatcaaaaagagagcctatgtgtgccctgagccctcttgtgttcatcaccacccttcaagagcacttggggatctcacagggatcaagaagcacttttgtagaaagcatggggagaagaagtggaagtgtgacaagtgctcgaagatctatgctgttcaatctgattggaaagctaactccaaaacctgtggtacaagagaatatagatgtggctgtggaaccctttttctccatgtgagtcataaacatttcagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2 zf-C2H2_jaz

Protein Analysis

157

Amino Acids

18.06

Weight (kDa)

9.98

Isoelectric Point (pI)

40.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009751)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02670 AT4G02670
fragaria_vesca	FvH4_2g22950
malus_domestica	MD03G1258200.v1.1 MD11G1278800.v1.1
prunus_persica	Prupe.8G234800_v2.0.a1
pyrus_communis	pycom03g20450 pycom11g24640
rosa_chinensis	RchiOBHm_Chr6g0289921 RchiOBHm_Chr6g0289971
rosa_laevigata	RLG00000012256
rosa_multiflora	Rmu_sc0001312.1_g000003 Rmu_sc0003927.1_g000012 Rmu_sc0029149.1_g000001
rosa_roxburghii	Rroxscaffold_7G00177470
rosa_rugosa	Rorug06G0208100
rosa_samantha	Rh6BG326500 Rh6CG332400 Rh6DG318200
rosa_wichuraiana	Rw0G009790 Rw6G027550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	186
AciI	CCGC	2 cut(s)	5, 8
AclWI	GGATC	2 cut(s)	294, 305
AcoI	YGGCCR	2 cut(s)	93, 111
AcuI	CTGAAG	1 cut(s)	212
AfaI	GTAC	1 cut(s)	409
AgsI	TTSAA	2 cut(s)	273, 374
AjnI	CCWGG	2 cut(s)	37, 90
AluBI	AGCT	3 cut(s)	190, 389, 471
AluI	AGCT	3 cut(s)	190, 389, 471
Alw21I	GWGCWC	2 cut(s)	280, 356
AlwI	GGATC	2 cut(s)	294, 305
AlwNI	CAGNNNCTG	1 cut(s)	53
AoxI	GGCC	3 cut(s)	93, 111, 169
ApeKI	GCWGC	1 cut(s)	204
Asp700I	GAANNNNTTC	1 cut(s)	104
AspS9I	GGNCC	1 cut(s)	142
AsuHPI	GGTGA	1 cut(s)	254
AvaII	GGWCC	1 cut(s)	142
BaeGI	GKGCMC	1 cut(s)	242
BalI	TGGCCA	1 cut(s)	95
BanII	GRGCYC	1 cut(s)	249
Bbv12I	GWGCWC	2 cut(s)	280, 356
BbvI	GCAGC	1 cut(s)	216
BciT130I	CCWGG	2 cut(s)	39, 92
BclI	TGATCA	1 cut(s)	216
BfaI	CTAG	1 cut(s)	472
BfuAI	ACCTGC	1 cut(s)	186
BglII	AGATCT	1 cut(s)	360
BisI	GCNGC	2 cut(s)	8, 205
BlsI	GCNGC	2 cut(s)	9, 206
Bme1390I	CCNGG	2 cut(s)	39, 92
Bme18I	GGWCC	1 cut(s)	142
BmgT120I	GGNCC	1 cut(s)	142
BmiI	GGNNCC	3 cut(s)	134, 143, 436
BmrFI	CCNGG	2 cut(s)	39, 92
BmsI	GCATC	1 cut(s)	46
Bpu10I	CCTNAGC	1 cut(s)	243
BsaJI	CCNNGG	2 cut(s)	37, 182
BsaXI	ACNNNNNCTCC	2 cut(s)	320, 350
BseBI	CCWGG	2 cut(s)	39, 92
BseDI	CCNNGG	2 cut(s)	37, 182
BseMII	CTCAG	1 cut(s)	234
BseSI	GKGCMC	1 cut(s)	242
BseXI	GCAGC	1 cut(s)	216
BshFI	GGCC	3 cut(s)	95, 113, 171
BsiHKAI	GWGCWC	2 cut(s)	280, 356
BslFI	GGGAC	1 cut(s)	155
BsmFI	GGGAC	1 cut(s)	155
BsnI	GGCC	3 cut(s)	95, 113, 171
Bsp1286I	GDGCHC	4 cut(s)	242, 249, 280, 356
Bsp143I	GATC	4 cut(s)	216, 286, 297, 360
Bsp19I	CCATGG	1 cut(s)	182
BspACI	CCGC	2 cut(s)	5, 8
BspANI	GGCC	3 cut(s)	95, 113, 171
BspCNI	CTCAG	1 cut(s)	235
BspLI	GGNNCC	3 cut(s)	134, 143, 436
BspMI	ACCTGC	1 cut(s)	186
BspPI	GGATC	2 cut(s)	294, 305
BssECI	CCNNGG	2 cut(s)	37, 182
BssMI	GATC	4 cut(s)	216, 286, 297, 360
BssT1I	CCWWGG	1 cut(s)	182
Bst2UI	CCWGG	2 cut(s)	39, 92
Bst6I	CTCTTC	1 cut(s)	20
BstDEI	CTNAG	1 cut(s)	243
BstDSI	CCRYGG	1 cut(s)	182
BstKTI	GATC	4 cut(s)	219, 289, 300, 363
BstMBI	GATC	4 cut(s)	216, 286, 297, 360
BstMWI	GCNNNNNNNGC	1 cut(s)	187
BstNI	CCWGG	2 cut(s)	39, 92
BstSCI	CCNGG	2 cut(s)	37, 90
BstSLI	GKGCMC	1 cut(s)	242
BstV1I	GCAGC	1 cut(s)	216
BstX2I	RGATCY	2 cut(s)	286, 360
BstYI	RGATCY	2 cut(s)	286, 360
BsuRI	GGCC	3 cut(s)	95, 113, 171
BtgI	CCRYGG	1 cut(s)	182
BveI	ACCTGC	1 cut(s)	186
CaiI	CAGNNNCTG	1 cut(s)	53
Cfr13I	GGNCC	1 cut(s)	142
Csp6I	GTAC	1 cut(s)	408
CspCI	CAANNNNNGTGG	2 cut(s)	385, 420
CviAII	CATG	3 cut(s)	183, 323, 449
CviQI	GTAC	1 cut(s)	408
DdeI	CTNAG	1 cut(s)	243
DpnI	GATC	4 cut(s)	218, 288, 299, 362
DpnII	GATC	4 cut(s)	216, 286, 297, 360
EaeI	YGGCCR	2 cut(s)	93, 111
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	182
Eco24I	GRGCYC	1 cut(s)	249
Eco47I	GGWCC	1 cut(s)	142
Eco57I	CTGAAG	1 cut(s)	212
EcoRII	CCWGG	2 cut(s)	37, 90
EcoT14I	CCWWGG	1 cut(s)	182
EcoT38I	GRGCYC	1 cut(s)	249
ErhI	CCWWGG	1 cut(s)	182
FaeI	CATG	3 cut(s)	186, 326, 452
FaiI	YATR	7 cut(s)	184, 234, 324, 366, 420, 450, 459
FalI	AAGNNNNNCTT	2 cut(s)	293, 325
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	3 cut(s)	182, 322, 448
FbaI	TGATCA	1 cut(s)	216
Fnu4HI	GCNGC	2 cut(s)	8, 205
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	2 cut(s)	8, 205
FspBI	CTAG	1 cut(s)	472
GluI	GCNGC	2 cut(s)	8, 205
HaeIII	GGCC	3 cut(s)	95, 113, 171
Hin1II	CATG	3 cut(s)	186, 326, 452
HinfI	GANTC	2 cut(s)	105, 454
HphI	GGTGA	1 cut(s)	254
Hpy188I	TCNGA	1 cut(s)	379
Hpy188III	TCNNGA	3 cut(s)	136, 273, 301
HpyAV	CCTTC	1 cut(s)	279
HpyCH4V	TGCA	1 cut(s)	123
HpyF10VI	GCNNNNNNNGC	1 cut(s)	187
HpyF3I	CTNAG	1 cut(s)	243
Hsp92II	CATG	3 cut(s)	186, 326, 452
Ksp22I	TGATCA	1 cut(s)	216
Kzo9I	GATC	4 cut(s)	216, 286, 297, 360
LmnI	GCTCC	1 cut(s)	93
Lsp1109I	GCAGC	1 cut(s)	216
LweI	GCATC	1 cut(s)	46
MaeI	CTAG	1 cut(s)	472
MaeIII	GTNAC	1 cut(s)	344
MalI	GATC	4 cut(s)	218, 288, 299, 362
MboI	GATC	4 cut(s)	216, 286, 297, 360
MboII	GAAGA	4 cut(s)	25, 37, 343, 370
MflI	RGATCY	2 cut(s)	286, 360
MhlI	GDGCHC	4 cut(s)	242, 249, 280, 356
MlsI	TGGCCA	1 cut(s)	95
MluCI	AATT	1 cut(s)	118
MluNI	TGGCCA	1 cut(s)	95
MlyI	GAGTC	1 cut(s)	463
MmeI	TCCRAC	1 cut(s)	178
MnlI	CCTC	5 cut(s)	44, 132, 161, 161, 259
Mox20I	TGGCCA	1 cut(s)	95
MroXI	GAANNNNTTC	1 cut(s)	104
MscI	TGGCCA	1 cut(s)	95
MseI	TTAA	1 cut(s)	18
Msp20I	TGGCCA	1 cut(s)	95
MspR9I	CCNGG	2 cut(s)	39, 92
MvaI	CCWGG	2 cut(s)	39, 92
MwoI	GCNNNNNNNGC	1 cut(s)	187
NcoI	CCATGG	1 cut(s)	182
NdeII	GATC	4 cut(s)	216, 286, 297, 360
NlaIII	CATG	3 cut(s)	186, 326, 452
NlaIV	GGNNCC	3 cut(s)	134, 143, 436
NmeAIII	GCCGAG	1 cut(s)	139
NmuCI	GTSAC	1 cut(s)	344
PdmI	GAANNNNTTC	1 cut(s)	104
PfeI	GAWTC	1 cut(s)	105
PkrI	GCNGC	2 cut(s)	9, 206
PleI	GAGTC	1 cut(s)	462
PpsI	GAGTC	1 cut(s)	462
Psp6I	CCWGG	2 cut(s)	37, 90
PspGI	CCWGG	2 cut(s)	37, 90
PspN4I	GGNNCC	3 cut(s)	134, 143, 436
PspPI	GGNCC	1 cut(s)	142
PstNI	CAGNNNCTG	1 cut(s)	53
PsuI	RGATCY	2 cut(s)	286, 360
RsaI	GTAC	1 cut(s)	409
RsaNI	GTAC	1 cut(s)	408
SaqAI	TTAA	1 cut(s)	18
SatI	GCNGC	2 cut(s)	8, 205
Sau3AI	GATC	4 cut(s)	216, 286, 297, 360
Sau96I	GGNCC	1 cut(s)	142
SchI	GAGTC	1 cut(s)	463
ScrFI	CCNGG	2 cut(s)	39, 92
SduI	GDGCHC	4 cut(s)	242, 249, 280, 356
SetI	ASST	6 cut(s)	153, 180, 192, 391, 404, 473
SfaNI	GCATC	1 cut(s)	46
SinI	GGWCC	1 cut(s)	142
Sse9I	AATT	1 cut(s)	118
SsiI	CCGC	2 cut(s)	5, 8
SspMI	CTAG	1 cut(s)	472
StyD4I	CCNGG	2 cut(s)	37, 90
StyI	CCWWGG	1 cut(s)	182
TaqI	TCGA	1 cut(s)	356
TasI	AATT	1 cut(s)	118
TauI	GCSGC	1 cut(s)	10
TfiI	GAWTC	1 cut(s)	105
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TseFI	GTSAC	1 cut(s)	344
TseI	GCWGC	1 cut(s)	204
Tsp45I	GTSAC	1 cut(s)	344
TspDTI	ATGAA	1 cut(s)	248
VpaK11BI	GGWCC	1 cut(s)	142
XmnI	GAANNNNTTC	1 cut(s)	104
XspI	CTAG	1 cut(s)	472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.