Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003927.1

Orthogroup ID

OG0009751

Physical Location & Seq

Genomic Coordinates Forward (+)

47999 .. 52427

Gene Structure 4429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003927.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

atgaaaactataatcagggctaagcataaccccatttcaatgcaagagttaaggtctcttttgatcattgctgaagctgaaattgaagaggttgacaagtcaatttccttaccttccagtactgaaatcgtagcacaaggtgataatgtcagagggtctactcatgcaccaactcatgttacagattccaaacacaacgttactgctttgatgcctctaagtagtgttgcccattctattgaatatattgcacagtttatgcctaattcaaggaaggatagcttcataactcacagagccttctgtgatgctctggctgaagaaagtgcaaggctctcagcaagccaattagctattgccaccacacctcaaatctctctcttccctttcccaaaccactctcacttcacaaacccacccccattaccattcaccaccctctctccctgggacccaccccacaaccctaaccctaatatcacccaaaacccacttcaccaccacgtcaagcctgaagaaactcaccaccacttccccctaaacccaactctcttccaagagaccccatcacctcaacacaagactctgataacctctcccttccagcacctccacgtcagcacacagccaacctcaagtgtcgccacgtcagctcacctgtcagccactgcgctgctccaaaaggccgccaccattggcgcctccgccgctgggaagcagcagtctcagtcagctggcttggctgagtttgggacattaggagggttcacgtccggagaactcaccacgtggcagaagactgaccgtctgacgagggacttcctcggtctgacgtccgcggacggcaacggctgtgatcatgggaatgaagctgttaacgtcgtcaacgatatgttaacgtacgccgggggagccgtcgagtttcaacagtatcatcatgaccagcgtctgcgtggccatcacgctctgttgaagccccagggttttgggttcgcggagactactgcctctgacacttggggggattgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2 zf-C2H2_jaz

Protein Analysis

343

Amino Acids

37.27

Weight (kDa)

6.15

Isoelectric Point (pI)

44.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009751)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02670 AT4G02670
fragaria_vesca	FvH4_2g22950
malus_domestica	MD03G1258200.v1.1 MD11G1278800.v1.1
prunus_persica	Prupe.8G234800_v2.0.a1
pyrus_communis	pycom03g20450 pycom11g24640
rosa_chinensis	RchiOBHm_Chr6g0289921 RchiOBHm_Chr6g0289971
rosa_laevigata	RLG00000012256
rosa_multiflora	Rmu_sc0001312.1_g000003 Rmu_sc0003927.1_g000012 Rmu_sc0029149.1_g000001
rosa_roxburghii	Rroxscaffold_7G00177470
rosa_rugosa	Rorug06G0208100
rosa_samantha	Rh6BG326500 Rh6CG332400 Rh6DG318200
rosa_wichuraiana	Rw0G009790 Rw6G027550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	836
AccB1I	GGYRCC	1 cut(s)	698
AccI	GTMKAC	1 cut(s)	158
AccII	CGCG	2 cut(s)	839, 995
AccIII	TCCGGA	1 cut(s)	773
AciI	CCGC	6 cut(s)	687, 705, 708, 837, 839, 995
AclI	AACGTT	1 cut(s)	198
AcoI	YGGCCR	1 cut(s)	955
AcuI	CTGAAG	3 cut(s)	93, 339, 534
AcvI	CACGTG	1 cut(s)	789
AcyI	GRCGYC	2 cut(s)	699, 833
AdeI	CACNNNGTG	2 cut(s)	140, 789
AfaI	GTAC	2 cut(s)	121, 902
AfiI	CCNNNNNNNGG	1 cut(s)	711
AgsI	TTSAA	6 cut(s)	39, 86, 242, 270, 926, 973
AhdI	GACNNNNNGTC	1 cut(s)	804
AjiI	CACGTC	4 cut(s)	505, 616, 648, 771
AjnI	CCWGG	2 cut(s)	446, 978
AjuI	GAANNNNNNNTTGG	2 cut(s)	477, 509
AluBI	AGCT	6 cut(s)	77, 282, 353, 653, 734, 872
AluI	AGCT	6 cut(s)	77, 282, 353, 653, 734, 872
Alw26I	GTCTC	4 cut(s)	60, 554, 729, 992
AlwNI	CAGNNNCTG	2 cut(s)	668, 949
Aor13HI	TCCGGA	1 cut(s)	773
AoxI	GGCC	2 cut(s)	684, 955
ApeKI	GCWGC	2 cut(s)	673, 718
AspLEI	GCGC	2 cut(s)	673, 701
AspS9I	GGNCC	1 cut(s)	451
AsuC2I	CCSGG	1 cut(s)	907
AsuHPI	GGTGA	8 cut(s)	152, 424, 472, 488, 515, 561, 647, 775
AvaII	GGWCC	1 cut(s)	451
BalI	TGGCCA	1 cut(s)	957
BanI	GGYRCC	1 cut(s)	698
BbrPI	CACGTG	1 cut(s)	789
BbsI	GAAGAC	1 cut(s)	803
BbvI	GCAGC	2 cut(s)	660, 730
BccI	CCATC	2 cut(s)	574, 966
BceAI	ACGGC	3 cut(s)	859, 865, 899
BciT130I	CCWGG	2 cut(s)	448, 980
BclI	TGATCA	2 cut(s)	63, 856
BcnI	CCSGG	1 cut(s)	907
BcoDI	GTCTC	4 cut(s)	60, 554, 729, 992
BfoI	RGCGCY	1 cut(s)	702
BisI	GCNGC	4 cut(s)	674, 687, 708, 719
BlpI	GCTNAGC	1 cut(s)	21
BlsI	GCNGC	4 cut(s)	675, 688, 709, 720
BmcAI	AGTACT	1 cut(s)	121
Bme1390I	CCNGG	3 cut(s)	448, 907, 980
Bme18I	GGWCC	1 cut(s)	451
BmeRI	GACNNNNNGTC	1 cut(s)	804
BmgBI	CACGTC	4 cut(s)	505, 616, 648, 771
BmgT120I	GGNCC	1 cut(s)	451
BmiI	GGNNCC	4 cut(s)	452, 453, 700, 913
BmrFI	CCNGG	3 cut(s)	448, 907, 980
BmsI	GCATC	2 cut(s)	201, 298
BoxI	GACNNNNGTC	1 cut(s)	945
BpiI	GAAGAC	1 cut(s)	803
Bpu1102I	GCTNAGC	1 cut(s)	21
BpuEI	CTTGAG	1 cut(s)	619
BpuMI	CCSGG	1 cut(s)	907
BsaAI	YACGTR	1 cut(s)	789
BsaHI	GRCGYC	2 cut(s)	699, 833
BsaI	GGTCTC	2 cut(s)	60, 554
BsaJI	CCNNGG	7 cut(s)	446, 447, 823, 837, 906, 978, 979
BsaWI	WCCGGW	1 cut(s)	773
BsaXI	ACNNNNNCTCC	2 cut(s)	427, 457
Bsc4I	CCNNNNNNNGG	1 cut(s)	711
Bse1I	ACTGG	1 cut(s)	117
Bse3DI	GCAATG	1 cut(s)	66
BseAI	TCCGGA	1 cut(s)	773
BseBI	CCWGG	2 cut(s)	448, 980
BseDI	CCNNGG	7 cut(s)	446, 447, 823, 837, 906, 978, 979
BseLI	CCNNNNNNNGG	1 cut(s)	711
BseMI	GCAATG	1 cut(s)	66
BseMII	CTCAG	3 cut(s)	351, 735, 740
BseNI	ACTGG	1 cut(s)	117
BseXI	GCAGC	2 cut(s)	660, 730
BseYI	CCCAGC	1 cut(s)	710
Bsh1236I	CGCG	2 cut(s)	839, 995
BshFI	GGCC	2 cut(s)	686, 957
BshNI	GGYRCC	1 cut(s)	698
BsiSI	CCGG	2 cut(s)	774, 906
BsiWI	CGTACG	1 cut(s)	900
BslFI	GGGAC	3 cut(s)	464, 766, 830
BslI	CCNNNNNNNGG	1 cut(s)	711
BsmAI	GTCTC	4 cut(s)	60, 554, 729, 992
BsmFI	GGGAC	3 cut(s)	464, 766, 830
BsnI	GGCC	2 cut(s)	686, 957
Bso31I	GGTCTC	2 cut(s)	60, 554
Bsp13I	TCCGGA	1 cut(s)	773
Bsp143I	GATC	2 cut(s)	63, 856
Bsp1720I	GCTNAGC	1 cut(s)	21
BspACI	CCGC	6 cut(s)	687, 705, 708, 837, 839, 995
BspANI	GGCC	2 cut(s)	686, 957
BspCNI	CTCAG	3 cut(s)	350, 736, 739
BspEI	TCCGGA	1 cut(s)	773
BspFNI	CGCG	2 cut(s)	839, 995
BspHI	TCATGA	1 cut(s)	937
BspLI	GGNNCC	4 cut(s)	452, 453, 700, 913
BspT107I	GGYRCC	1 cut(s)	698
BspTNI	GGTCTC	2 cut(s)	60, 554
BsrDI	GCAATG	1 cut(s)	66
BsrI	ACTGG	1 cut(s)	117
BssECI	CCNNGG	7 cut(s)	446, 447, 823, 837, 906, 978, 979
BssMI	GATC	2 cut(s)	63, 856
BssNI	GRCGYC	2 cut(s)	699, 833
Bst2UI	CCWGG	2 cut(s)	448, 980
Bst4CI	ACNGT	3 cut(s)	255, 806, 930
Bst6I	CTCTTC	3 cut(s)	81, 386, 557
BstACI	GRCGYC	2 cut(s)	699, 833
BstBAI	YACGTR	1 cut(s)	789
BstC8I	GCNNGC	2 cut(s)	343, 736
BstDEI	CTNAG	5 cut(s)	21, 218, 337, 726, 744
BstDSI	CCRYGG	1 cut(s)	837
BstFNI	CGCG	2 cut(s)	839, 995
BstH2I	RGCGCY	1 cut(s)	702
BstHHI	GCGC	2 cut(s)	673, 701
BstKTI	GATC	2 cut(s)	66, 859
BstMAI	GTCTC	4 cut(s)	60, 554, 729, 992
BstMBI	GATC	2 cut(s)	63, 856
BstMWI	GCNNNNNNNGC	4 cut(s)	650, 707, 740, 911
BstNI	CCWGG	2 cut(s)	448, 980
BstPAI	GACNNNNGTC	1 cut(s)	945
BstSCI	CCNGG	3 cut(s)	446, 905, 978
BstUI	CGCG	2 cut(s)	839, 995
BstV1I	GCAGC	2 cut(s)	660, 730
BstV2I	GAAGAC	1 cut(s)	803
BstXI	CCANNNNNNTGG	1 cut(s)	986
BsuRI	GGCC	2 cut(s)	686, 957
BtgI	CCRYGG	1 cut(s)	837
BtrI	CACGTC	4 cut(s)	505, 616, 648, 771
BtsI	GCAGTG	1 cut(s)	666
BtsIMutI	CAGTG	1 cut(s)	666
Cac8I	GCNNGC	2 cut(s)	343, 736
CaiI	CAGNNNCTG	2 cut(s)	668, 949
CciI	TCATGA	1 cut(s)	937
CfoI	GCGC	2 cut(s)	673, 701
Cfr13I	GGNCC	1 cut(s)	451
Cfr42I	CCGCGG	1 cut(s)	840
CseI	GACGC	1 cut(s)	935
Csp6I	GTAC	2 cut(s)	120, 901
CviAII	CATG	4 cut(s)	164, 176, 860, 938
CviQI	GTAC	2 cut(s)	120, 901
DdeI	CTNAG	5 cut(s)	21, 218, 337, 726, 744
DinI	GGCGCC	1 cut(s)	700
DpnI	GATC	2 cut(s)	65, 858
DpnII	GATC	2 cut(s)	63, 856
DraIII	CACNNNGTG	2 cut(s)	140, 789
DriI	GACNNNNNGTC	1 cut(s)	804
EaeI	YGGCCR	1 cut(s)	955
Eam1104I	CTCTTC	3 cut(s)	81, 386, 557
Eam1105I	GACNNNNNGTC	1 cut(s)	804
EarI	CTCTTC	3 cut(s)	81, 386, 557
EciI	GGCGGA	1 cut(s)	694
Eco31I	GGTCTC	2 cut(s)	60, 554
Eco47I	GGWCC	1 cut(s)	451
Eco57I	CTGAAG	3 cut(s)	93, 339, 534
Eco72I	CACGTG	1 cut(s)	789
EcoO109I	RGGNCCY	1 cut(s)	451
EcoRII	CCWGG	2 cut(s)	446, 978
EgeI	GGCGCC	1 cut(s)	700
EheI	GGCGCC	1 cut(s)	700
FaeI	CATG	4 cut(s)	167, 179, 863, 941
FalI	AAGNNNNNCTT	2 cut(s)	266, 298
FaqI	GGGAC	3 cut(s)	464, 766, 830
FatI	CATG	4 cut(s)	163, 175, 859, 937
FbaI	TGATCA	2 cut(s)	63, 856
FblI	GTMKAC	1 cut(s)	158
Fnu4HI	GCNGC	4 cut(s)	674, 687, 708, 719
Fsp4HI	GCNGC	4 cut(s)	674, 687, 708, 719
GlaI	GCGC	2 cut(s)	672, 700
GluI	GCNGC	4 cut(s)	674, 687, 708, 719
GsaI	CCCAGC	1 cut(s)	714
HaeII	RGCGCY	1 cut(s)	702
HaeIII	GGCC	2 cut(s)	686, 957
HapII	CCGG	2 cut(s)	774, 906
HgaI	GACGC	1 cut(s)	935
HhaI	GCGC	2 cut(s)	673, 701
Hin1I	GRCGYC	2 cut(s)	699, 833
Hin1II	CATG	4 cut(s)	167, 179, 863, 941
Hin6I	GCGC	2 cut(s)	671, 699
HinP1I	GCGC	2 cut(s)	671, 699
HincII	GTYRAC	4 cut(s)	94, 877, 886, 897
HindII	GTYRAC	4 cut(s)	94, 877, 886, 897
HinfI	GANTC	2 cut(s)	185, 583
HpaI	GTTAAC	2 cut(s)	877, 897
HpaII	CCGG	2 cut(s)	774, 906
HphI	GGTGA	8 cut(s)	152, 424, 472, 488, 515, 561, 647, 775
Hpy166II	GTNNAC	6 cut(s)	94, 159, 768, 877, 886, 897
Hpy188I	TCNGA	5 cut(s)	152, 588, 810, 831, 1012
Hpy188III	TCNNGA	2 cut(s)	774, 938
Hpy8I	GTNNAC	6 cut(s)	94, 159, 768, 877, 886, 897
Hpy99I	CGWCG	2 cut(s)	884, 920
HpyAV	CCTTC	4 cut(s)	123, 268, 310, 610
HpyCH4III	ACNGT	3 cut(s)	255, 806, 930
HpyCH4IV	ACGT	9 cut(s)	198, 504, 615, 647, 770, 788, 833, 879, 899
HpyCH4V	TGCA	4 cut(s)	43, 167, 251, 329
HpyF10VI	GCNNNNNNNGC	4 cut(s)	650, 707, 740, 911
HpyF3I	CTNAG	5 cut(s)	21, 218, 337, 726, 744
HpySE526I	ACGT	9 cut(s)	198, 504, 615, 647, 770, 788, 833, 879, 899
Hsp92I	GRCGYC	2 cut(s)	699, 833
Hsp92II	CATG	4 cut(s)	167, 179, 863, 941
HspAI	GCGC	2 cut(s)	671, 699
KasI	GGCGCC	1 cut(s)	698
KflI	GGGWCCC	1 cut(s)	451
Kpn2I	TCCGGA	1 cut(s)	773
Ksp22I	TGATCA	2 cut(s)	63, 856
KspAI	GTTAAC	2 cut(s)	877, 897
KspI	CCGCGG	1 cut(s)	840
Kzo9I	GATC	2 cut(s)	63, 856
LmnI	GCTCC	2 cut(s)	681, 911
Lsp1109I	GCAGC	2 cut(s)	660, 730
LweI	GCATC	2 cut(s)	201, 298
MaeII	ACGT	9 cut(s)	198, 504, 615, 647, 770, 788, 833, 879, 899
MaeIII	GTNAC	2 cut(s)	178, 199
MalI	GATC	2 cut(s)	65, 858
MboI	GATC	2 cut(s)	63, 856
MboII	GAAGA	6 cut(s)	98, 332, 373, 527, 544, 808
MlsI	TGGCCA	1 cut(s)	957
MluCI	AATT	4 cut(s)	81, 102, 265, 347
MluNI	TGGCCA	1 cut(s)	957
Mly113I	GGCGCC	1 cut(s)	699
MlyI	GAGTC	1 cut(s)	577
Mox20I	TGGCCA	1 cut(s)	957
MroI	TCCGGA	1 cut(s)	773
MscI	TGGCCA	1 cut(s)	957
MseI	TTAA	3 cut(s)	50, 876, 896
MslI	CAYNNNNRTG	2 cut(s)	38, 864
Msp20I	TGGCCA	1 cut(s)	957
MspA1I	CMGCKG	3 cut(s)	710, 734, 839
MspI	CCGG	2 cut(s)	774, 906
MspR9I	CCNGG	3 cut(s)	448, 907, 980
MvaI	CCWGG	2 cut(s)	448, 980
MvnI	CGCG	2 cut(s)	839, 995
MwoI	GCNNNNNNNGC	4 cut(s)	650, 707, 740, 911
NarI	GGCGCC	1 cut(s)	699
NciI	CCSGG	1 cut(s)	907
NdeII	GATC	2 cut(s)	63, 856
NlaIII	CATG	4 cut(s)	167, 179, 863, 941
NlaIV	GGNNCC	4 cut(s)	452, 453, 700, 913
PagI	TCATGA	1 cut(s)	937
PasI	CCCWGGG	2 cut(s)	447, 979
PcsI	WCGNNNNNNNCGW	1 cut(s)	885
PfeI	GAWTC	1 cut(s)	185
Pfl23II	CGTACG	1 cut(s)	900
PkrI	GCNGC	4 cut(s)	675, 688, 709, 720
PleI	GAGTC	1 cut(s)	577
PluTI	GGCGCC	1 cut(s)	702
PmaCI	CACGTG	1 cut(s)	789
PmlI	CACGTG	1 cut(s)	789
PpsI	GAGTC	1 cut(s)	577
Ppu21I	YACGTR	1 cut(s)	789
PpuMI	RGGWCCY	1 cut(s)	451
PshAI	GACNNNNGTC	1 cut(s)	945
Psp1406I	AACGTT	1 cut(s)	198
Psp5II	RGGWCCY	1 cut(s)	451
Psp6I	CCWGG	2 cut(s)	446, 978
PspCI	CACGTG	1 cut(s)	789
PspFI	CCCAGC	1 cut(s)	710
PspGI	CCWGG	2 cut(s)	446, 978
PspLI	CGTACG	1 cut(s)	900
PspN4I	GGNNCC	4 cut(s)	452, 453, 700, 913
PspPI	GGNCC	1 cut(s)	451
PspPPI	RGGWCCY	1 cut(s)	451
PstNI	CAGNNNCTG	2 cut(s)	668, 949
PvuII	CAGCTG	1 cut(s)	734
RsaI	GTAC	2 cut(s)	121, 902
RsaNI	GTAC	2 cut(s)	120, 901
RseI	CAYNNNNRTG	2 cut(s)	38, 864
SacII	CCGCGG	1 cut(s)	840
SaqAI	TTAA	3 cut(s)	50, 876, 896
SatI	GCNGC	4 cut(s)	674, 687, 708, 719
Sau3AI	GATC	2 cut(s)	63, 856
Sau96I	GGNCC	1 cut(s)	451
ScaI	AGTACT	1 cut(s)	121
SchI	GAGTC	1 cut(s)	577
ScrFI	CCNGG	3 cut(s)	448, 907, 980
SfaNI	GCATC	2 cut(s)	201, 298
SfoI	GGCGCC	1 cut(s)	700
Sfr303I	CCGCGG	1 cut(s)	840
SgrBI	CCGCGG	1 cut(s)	840
SinI	GGWCC	1 cut(s)	451
SmiMI	CAYNNNNRTG	2 cut(s)	38, 864
SmlI	CTYRAG	1 cut(s)	634
SmoI	CTYRAG	1 cut(s)	634
Sse9I	AATT	4 cut(s)	81, 102, 265, 347
SsiI	CCGC	6 cut(s)	687, 705, 708, 837, 839, 995
SspDI	GGCGCC	1 cut(s)	698
StyD4I	CCNGG	3 cut(s)	446, 905, 978
TaaI	ACNGT	3 cut(s)	255, 806, 930
TaiI	ACGT	9 cut(s)	201, 507, 618, 650, 773, 791, 836, 882, 902
TaqI	TCGA	1 cut(s)	918
TaqII	GACCGA	1 cut(s)	815
TasI	AATT	4 cut(s)	81, 102, 265, 347
TatI	WGTACW	1 cut(s)	119
TauI	GCSGC	2 cut(s)	689, 710
TfiI	GAWTC	1 cut(s)	185
Tru1I	TTAA	3 cut(s)	50, 876, 896
Tru9I	TTAA	3 cut(s)	50, 876, 896
TscAI	CASTG	1 cut(s)	673
TseI	GCWGC	2 cut(s)	673, 718
TspDTI	ATGAA	3 cut(s)	17, 274, 882
TspRI	CASTG	1 cut(s)	673
VpaK11BI	GGWCC	1 cut(s)	451
XcmI	CCANNNNNNNNNTGG	1 cut(s)	950
XmiI	GTMKAC	1 cut(s)	158
ZraI	GACGTC	1 cut(s)	834
ZrmI	AGTACT	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.