Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0009751

Physical Location & Seq

Genomic Coordinates Reverse (-)

20805888 .. 20809375

Gene Structure 3488 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G234800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1383 bp

ATGTTTCCTGCTATGTCTAATTCCACTTCTTTGTCTGAGGAAGCTAATAGTCTTTCTTCTGACTTTGGCCCCTTAAACCCACTCCTTCTCTCCACCAATATTTCTCCTCATCAATCTGATCACCAGCACCAGCAACCAACCAACAAAATCAAAAAGAAAAGAAGTCTCCCTGGAAACCCAGACCCAGATGCTGAAGTGATTGCATTATCCCCAAAGACTCTACTGGCCACAAACAGATTTGTGTGTGAGATTTGCAACAAGGGGTTTCAAAGAGATCAGAACCTTCAGCTTCACAGGAGAGGCCACAACCTTCCATGGAAGCTGAAGCAAAGGAACAACAAGGATCAGATCAGAAAGAGAGCCTATGTCTGCCCTGAGCCCTCATGTGTTCATCACCACCCTTCAAGAGCACTGGGTGACCTCACTGGGATCAAGAAGCACTTTTGCAGGAAGCATGGGGAGAAGAAGTGGAAGTGTGACAAGTGCTCCAAGATCTATGCTGTTCAATCTGATTGGAAGGCTCACTCCAAAACCTGTGGTACAAGAGAATATAGATGCGACTGTGGAACCCTTTTCTCCAGGAAGGACAGCTTCATAACTCACAGGGCATTTTGTGATGCTTTGGCTGAAGAAAGTGCAAAACTGTCAGCAAGCCAGTTAGCCGCCACCACCACCACAAACCCAAATATTATGACACCTCAAATATCTCTCTTCCCTTTCCAAAACCCACCACCTCCCTTCACCACCATCTCCCTCACTCCCTGGGACCCACCTCATCATCAAAACCCTAACCCTAACCTTAATCACCACCTCATCAAGACTGAATCTCATCACCACAACCATTTCCCAACAACACAACCCCACAAGGGTTTGTTGACCTCACCCTTCCAAAACCTTCATCTCAGCACACATCACAGCTCAAAACCCTCCACGTCATCCGCCCACCTGTCAGCCACTGCGCTCCTCCAAAAGGCTGCAACCGTTGGTTCTGCATCATCAGCAGCAGCCTCTGCTGGCCAACAGGCTCAGTCCGCTGGCTTGACCGTGGGCGAGTTTGGAACAGCGAGCCATATGAACATGATCTCGACCGACTATCTAGGCGAGTTCACGTCCGGGGATCTCACCACGTGGCAGAAGACTGACCGCCTGACAAGGGATTTTCTTGGTCTGACCGGGGATGGCACGGGGAATCATAATGTTGGTGCTGTTAACGTCGTCAAGGACATGCTAACGTACGCCGGGGGCGTAGAGTTCCATCAACAGCAGCAGCAGCCGTACGATCAGCCCCTGCGTGGTCATAATAATTCGCTGCTGCTGAAGCCCCAAGGTTTTGGGTTCGCTGAGACCACTGCTGCTGCCTCGGAAACGTGGGGAGACTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2 zf-C2H2_jaz

Protein Analysis

461

Amino Acids

50.7

Weight (kDa)

8.99

Isoelectric Point (pI)

41.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009751)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02670 AT4G02670
fragaria_vesca	FvH4_2g22950
malus_domestica	MD03G1258200.v1.1 MD11G1278800.v1.1
prunus_persica	Prupe.8G234800_v2.0.a1
pyrus_communis	pycom03g20450 pycom11g24640
rosa_chinensis	RchiOBHm_Chr6g0289921 RchiOBHm_Chr6g0289971
rosa_laevigata	RLG00000012256
rosa_multiflora	Rmu_sc0001312.1_g000003 Rmu_sc0003927.1_g000012 Rmu_sc0029149.1_g000001
rosa_roxburghii	Rroxscaffold_7G00177470
rosa_rugosa	Rorug06G0208100
rosa_samantha	Rh6BG326500 Rh6CG332400 Rh6DG318200
rosa_wichuraiana	Rw0G009790 Rw6G027550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	663, 939, 1032, 1144
AclWI	GGATC	3 cut(s)	351, 437, 1125
AcoI	YGGCCR	2 cut(s)	225, 1015
AcuI	CTGAAG	5 cut(s)	213, 269, 344, 648, 1337
AcvI	CACGTG	1 cut(s)	1128
AdeI	CACNNNGTG	2 cut(s)	416, 1128
AfaI	GTAC	3 cut(s)	541, 1235, 1277
AfiI	CCNNNNNNNGG	4 cut(s)	866, 970, 1153, 1292
AgsI	TTSAA	3 cut(s)	269, 405, 506
AjiI	CACGTC	2 cut(s)	933, 1110
AjnI	CCWGG	3 cut(s)	169, 578, 761
AluBI	AGCT	5 cut(s)	44, 289, 322, 591, 918
AluI	AGCT	5 cut(s)	44, 289, 322, 591, 918
Alw21I	GWGCWC	2 cut(s)	412, 488
Alw26I	GTCTC	3 cut(s)	170, 1337, 1368
AlwI	GGATC	3 cut(s)	351, 437, 1125
AlwNI	CAGNNNCTG	4 cut(s)	191, 956, 1010, 1288
AoxI	GGCC	4 cut(s)	67, 225, 301, 1015
AspLEI	GCGC	1 cut(s)	961
AspS9I	GGNCC	2 cut(s)	68, 766
AsuC2I	CCSGG	3 cut(s)	1114, 1174, 1240
AsuHPI	GGTGA	8 cut(s)	113, 386, 428, 733, 797, 824, 873, 1114
AvaII	GGWCC	1 cut(s)	766
BalI	TGGCCA	2 cut(s)	227, 1017
BanII	GRGCYC	1 cut(s)	381
BbrPI	CACGTG	1 cut(s)	1128
BbsI	GAAGAC	1 cut(s)	1142
Bbv12I	GWGCWC	2 cut(s)	412, 488
BccI	CCATC	3 cut(s)	755, 1172, 1263
BceAI	ACGGC	1 cut(s)	1258
BciT130I	CCWGG	3 cut(s)	171, 580, 763
BclI	TGATCA	1 cut(s)	118
BcnI	CCSGG	3 cut(s)	1114, 1174, 1240
BcoDI	GTCTC	3 cut(s)	170, 1337, 1368
BfaI	CTAG	1 cut(s)	1097
BglII	AGATCT	1 cut(s)	492
Bme1390I	CCNGG	6 cut(s)	171, 580, 763, 1114, 1174, 1240
Bme18I	GGWCC	1 cut(s)	766
BmgBI	CACGTC	2 cut(s)	933, 1110
BmgT120I	GGNCC	2 cut(s)	68, 766
BmiI	GGNNCC	4 cut(s)	70, 568, 767, 768
BmrFI	CCNGG	6 cut(s)	171, 580, 763, 1114, 1174, 1240
BmrI	ACTGGG	2 cut(s)	422, 435
BmsI	GCATC	4 cut(s)	178, 545, 607, 1001
BmuI	ACTGGG	2 cut(s)	422, 435
BpiI	GAAGAC	1 cut(s)	1142
BpmI	CTGGAG	1 cut(s)	562
Bpu10I	CCTNAGC	1 cut(s)	375
BpuMI	CCSGG	3 cut(s)	1114, 1174, 1240
BsaAI	YACGTR	1 cut(s)	1128
BsaI	GGTCTC	1 cut(s)	1337
BsaXI	ACNNNNNCTCC	4 cut(s)	452, 470, 482, 500
Bsc4I	CCNNNNNNNGG	4 cut(s)	866, 970, 1153, 1292
Bse1I	ACTGG	4 cut(s)	228, 417, 430, 655
BseBI	CCWGG	3 cut(s)	171, 580, 763
BseGI	GGATG	2 cut(s)	935, 1183
BseLI	CCNNNNNNNGG	4 cut(s)	866, 970, 1153, 1292
BseMII	CTCAG	5 cut(s)	27, 366, 916, 1040, 1332
BseNI	ACTGG	4 cut(s)	228, 417, 430, 655
BseRI	GAGGAG	2 cut(s)	96, 953
Bsh1285I	CGRYCG	1 cut(s)	1089
BshFI	GGCC	4 cut(s)	69, 227, 303, 1017
BsiEI	CGRYCG	1 cut(s)	1089
BsiHKAI	GWGCWC	2 cut(s)	412, 488
BsiSI	CCGG	3 cut(s)	1113, 1173, 1239
BsiWI	CGTACG	2 cut(s)	1233, 1275
BslFI	GGGAC	1 cut(s)	779
BslI	CCNNNNNNNGG	4 cut(s)	866, 970, 1153, 1292
BsmAI	GTCTC	3 cut(s)	170, 1337, 1368
BsmFI	GGGAC	1 cut(s)	779
BsnI	GGCC	4 cut(s)	69, 227, 303, 1017
Bso31I	GGTCTC	1 cut(s)	1337
Bsp1286I	GDGCHC	3 cut(s)	381, 412, 488
Bsp143I	GATC	9 cut(s)	118, 274, 343, 348, 429, 492, 1080, 1117, 1279
Bsp19I	CCATGG	1 cut(s)	314
BspACI	CCGC	4 cut(s)	663, 939, 1032, 1144
BspANI	GGCC	4 cut(s)	69, 227, 303, 1017
BspCNI	CTCAG	5 cut(s)	28, 367, 915, 1039, 1333
BspLI	GGNNCC	4 cut(s)	70, 568, 767, 768
BspPI	GGATC	3 cut(s)	351, 437, 1125
BspTNI	GGTCTC	1 cut(s)	1337
BsrI	ACTGG	4 cut(s)	228, 417, 430, 655
BssMI	GATC	9 cut(s)	118, 274, 343, 348, 429, 492, 1080, 1117, 1279
BssT1I	CCWWGG	2 cut(s)	314, 1324
Bst2UI	CCWGG	3 cut(s)	171, 580, 763
Bst4CI	ACNGT	5 cut(s)	563, 645, 982, 1045, 1379
Bst6I	CTCTTC	1 cut(s)	716
BstAPI	GCANNNNNTGC	1 cut(s)	1010
BstBAI	YACGTR	1 cut(s)	1128
BstC8I	GCNNGC	4 cut(s)	652, 1015, 1036, 1066
BstDEI	CTNAG	5 cut(s)	36, 375, 902, 1026, 1341
BstDSI	CCRYGG	2 cut(s)	314, 1044
BstEII	GGTNACC	1 cut(s)	416
BstENI	CCTNNNNNAGG	1 cut(s)	968
BstF5I	GGATG	2 cut(s)	935, 1183
BstHHI	GCGC	1 cut(s)	961
BstKTI	GATC	9 cut(s)	121, 277, 346, 351, 432, 495, 1083, 1120, 1282
BstMAI	GTCTC	3 cut(s)	170, 1337, 1368
BstMBI	GATC	9 cut(s)	118, 274, 343, 348, 429, 492, 1080, 1117, 1279
BstMCI	CGRYCG	1 cut(s)	1089
BstMWI	GCNNNNNNNGC	5 cut(s)	998, 1010, 1031, 1270, 1318
BstNI	CCWGG	3 cut(s)	171, 580, 763
BstNSI	RCATGY	1 cut(s)	1228
BstPI	GGTNACC	1 cut(s)	416
BstSCI	CCNGG	6 cut(s)	169, 578, 761, 1112, 1172, 1238
BstV2I	GAAGAC	1 cut(s)	1142
BstX2I	RGATCY	2 cut(s)	492, 1117
BstXI	CCANNNNNNTGG	1 cut(s)	1331
BstYI	RGATCY	2 cut(s)	492, 1117
BsuRI	GGCC	4 cut(s)	69, 227, 303, 1017
BtgI	CCRYGG	2 cut(s)	314, 1044
BtrI	CACGTC	2 cut(s)	933, 1110
BtsCI	GGATG	2 cut(s)	935, 1183
BtsI	GCAGTG	2 cut(s)	954, 1347
BtsIMutI	CAGTG	4 cut(s)	410, 423, 954, 1347
Cac8I	GCNNGC	4 cut(s)	652, 1015, 1036, 1066
CaiI	CAGNNNCTG	4 cut(s)	191, 956, 1010, 1288
CfoI	GCGC	1 cut(s)	961
Cfr13I	GGNCC	2 cut(s)	68, 766
Csp6I	GTAC	3 cut(s)	540, 1234, 1276
CspCI	CAANNNNNGTGG	2 cut(s)	517, 552
CviAII	CATG	5 cut(s)	315, 384, 455, 1078, 1225
CviQI	GTAC	3 cut(s)	540, 1234, 1276
DdeI	CTNAG	5 cut(s)	36, 375, 902, 1026, 1341
DpnI	GATC	9 cut(s)	120, 276, 345, 350, 431, 494, 1082, 1119, 1281
DpnII	GATC	9 cut(s)	118, 274, 343, 348, 429, 492, 1080, 1117, 1279
DraIII	CACNNNGTG	2 cut(s)	416, 1128
EaeI	YGGCCR	2 cut(s)	225, 1015
Eam1104I	CTCTTC	1 cut(s)	716
EarI	CTCTTC	1 cut(s)	716
EciI	GGCGGA	1 cut(s)	928
Eco130I	CCWWGG	2 cut(s)	314, 1324
Eco24I	GRGCYC	1 cut(s)	381
Eco31I	GGTCTC	1 cut(s)	1337
Eco47I	GGWCC	1 cut(s)	766
Eco57I	CTGAAG	5 cut(s)	213, 269, 344, 648, 1337
Eco72I	CACGTG	1 cut(s)	1128
Eco91I	GGTNACC	1 cut(s)	416
EcoNI	CCTNNNNNAGG	1 cut(s)	968
EcoO109I	RGGNCCY	1 cut(s)	766
EcoO65I	GGTNACC	1 cut(s)	416
EcoRII	CCWGG	3 cut(s)	169, 578, 761
EcoT14I	CCWWGG	2 cut(s)	314, 1324
EcoT38I	GRGCYC	1 cut(s)	381
ErhI	CCWWGG	2 cut(s)	314, 1324
FaeI	CATG	5 cut(s)	318, 387, 458, 1081, 1228
FalI	AAGNNNNNCTT	4 cut(s)	425, 457, 575, 607
FaqI	GGGAC	1 cut(s)	779
FatI	CATG	5 cut(s)	314, 383, 454, 1077, 1224
FauNDI	CATATG	1 cut(s)	1071
FbaI	TGATCA	1 cut(s)	118
FokI	GGATG	2 cut(s)	922, 1190
FriOI	GRGCYC	1 cut(s)	381
FspBI	CTAG	1 cut(s)	1097
GlaI	GCGC	1 cut(s)	960
GsuI	CTGGAG	1 cut(s)	562
HaeIII	GGCC	4 cut(s)	69, 227, 303, 1017
HapII	CCGG	3 cut(s)	1113, 1173, 1239
HhaI	GCGC	1 cut(s)	961
Hin1II	CATG	5 cut(s)	318, 387, 458, 1081, 1228
Hin6I	GCGC	1 cut(s)	959
HinP1I	GCGC	1 cut(s)	959
HincII	GTYRAC	2 cut(s)	876, 1210
HindII	GTYRAC	2 cut(s)	876, 1210
HinfI	GANTC	3 cut(s)	217, 824, 1189
HpaI	GTTAAC	1 cut(s)	1210
HpaII	CCGG	3 cut(s)	1113, 1173, 1239
HphI	GGTGA	8 cut(s)	113, 386, 428, 733, 797, 824, 873, 1114
Hpy166II	GTNNAC	3 cut(s)	876, 1107, 1210
Hpy188I	TCNGA	9 cut(s)	37, 61, 118, 279, 348, 353, 511, 1170, 1363
Hpy188III	TCNNGA	4 cut(s)	405, 433, 817, 1084
Hpy8I	GTNNAC	3 cut(s)	876, 1107, 1210
Hpy99I	CGWCG	1 cut(s)	1217
HpyAV	CCTTC	9 cut(s)	95, 293, 320, 411, 511, 577, 748, 895, 905
HpyCH4III	ACNGT	5 cut(s)	563, 645, 982, 1045, 1379
HpyCH4IV	ACGT	6 cut(s)	932, 1109, 1127, 1212, 1232, 1367
HpyCH4V	TGCA	6 cut(s)	203, 255, 447, 638, 977, 992
HpyF10VI	GCNNNNNNNGC	5 cut(s)	998, 1010, 1031, 1270, 1318
HpyF3I	CTNAG	5 cut(s)	36, 375, 902, 1026, 1341
HpySE526I	ACGT	6 cut(s)	932, 1109, 1127, 1212, 1232, 1367
Hsp92II	CATG	5 cut(s)	318, 387, 458, 1081, 1228
HspAI	GCGC	1 cut(s)	959
KflI	GGGWCCC	1 cut(s)	766
Ksp22I	TGATCA	1 cut(s)	118
KspAI	GTTAAC	1 cut(s)	1210
Kzo9I	GATC	9 cut(s)	118, 274, 343, 348, 429, 492, 1080, 1117, 1279
LmnI	GCTCC	2 cut(s)	491, 966
LweI	GCATC	4 cut(s)	178, 545, 607, 1001
MaeI	CTAG	1 cut(s)	1097
MaeII	ACGT	6 cut(s)	932, 1109, 1127, 1212, 1232, 1367
MaeIII	GTNAC	2 cut(s)	416, 476
MalI	GATC	9 cut(s)	120, 276, 345, 350, 431, 494, 1082, 1119, 1281
MboI	GATC	9 cut(s)	118, 274, 343, 348, 429, 492, 1080, 1117, 1279
MboII	GAAGA	5 cut(s)	48, 475, 641, 703, 1147
MflI	RGATCY	2 cut(s)	492, 1117
MhlI	GDGCHC	3 cut(s)	381, 412, 488
MlsI	TGGCCA	2 cut(s)	227, 1017
MluCI	AATT	2 cut(s)	19, 1303
MluNI	TGGCCA	2 cut(s)	227, 1017
MlyI	GAGTC	1 cut(s)	211
Mox20I	TGGCCA	2 cut(s)	227, 1017
MscI	TGGCCA	2 cut(s)	227, 1017
MseI	TTAA	3 cut(s)	74, 801, 1209
Msp20I	TGGCCA	2 cut(s)	227, 1017
MspA1I	CMGCKG	1 cut(s)	1034
MspI	CCGG	3 cut(s)	1113, 1173, 1239
MspR9I	CCNGG	6 cut(s)	171, 580, 763, 1114, 1174, 1240
MvaI	CCWGG	3 cut(s)	171, 580, 763
MwoI	GCNNNNNNNGC	5 cut(s)	998, 1010, 1031, 1270, 1318
NciI	CCSGG	3 cut(s)	1114, 1174, 1240
NcoI	CCATGG	1 cut(s)	314
NdeI	CATATG	1 cut(s)	1071
NdeII	GATC	9 cut(s)	118, 274, 343, 348, 429, 492, 1080, 1117, 1279
NlaIII	CATG	5 cut(s)	318, 387, 458, 1081, 1228
NlaIV	GGNNCC	4 cut(s)	70, 568, 767, 768
NmuCI	GTSAC	2 cut(s)	416, 476
NspI	RCATGY	1 cut(s)	1228
PasI	CCCWGGG	1 cut(s)	762
PcsI	WCGNNNNNNNCGW	1 cut(s)	1242
PfeI	GAWTC	2 cut(s)	824, 1189
Pfl23II	CGTACG	2 cut(s)	1233, 1275
PfoI	TCCNGGA	1 cut(s)	578
PleI	GAGTC	1 cut(s)	211
PmaCI	CACGTG	1 cut(s)	1128
PmlI	CACGTG	1 cut(s)	1128
PpsI	GAGTC	1 cut(s)	211
Ppu21I	YACGTR	1 cut(s)	1128
PpuMI	RGGWCCY	1 cut(s)	766
Psp5II	RGGWCCY	1 cut(s)	766
Psp6I	CCWGG	3 cut(s)	169, 578, 761
PspCI	CACGTG	1 cut(s)	1128
PspEI	GGTNACC	1 cut(s)	416
PspGI	CCWGG	3 cut(s)	169, 578, 761
PspLI	CGTACG	2 cut(s)	1233, 1275
PspN4I	GGNNCC	4 cut(s)	70, 568, 767, 768
PspPI	GGNCC	2 cut(s)	68, 766
PspPPI	RGGWCCY	1 cut(s)	766
PstNI	CAGNNNCTG	4 cut(s)	191, 956, 1010, 1288
PsuI	RGATCY	2 cut(s)	492, 1117
RsaI	GTAC	3 cut(s)	541, 1235, 1277
RsaNI	GTAC	3 cut(s)	540, 1234, 1276
SaqAI	TTAA	3 cut(s)	74, 801, 1209
Sau3AI	GATC	9 cut(s)	118, 274, 343, 348, 429, 492, 1080, 1117, 1279
Sau96I	GGNCC	2 cut(s)	68, 766
SchI	GAGTC	1 cut(s)	211
ScrFI	CCNGG	6 cut(s)	171, 580, 763, 1114, 1174, 1240
SduI	GDGCHC	3 cut(s)	381, 412, 488
SfaNI	GCATC	4 cut(s)	178, 545, 607, 1001
SinI	GGWCC	1 cut(s)	766
Sse9I	AATT	2 cut(s)	19, 1303
SsiI	CCGC	4 cut(s)	663, 939, 1032, 1144
SspI	AATATT	2 cut(s)	100, 688
SspMI	CTAG	1 cut(s)	1097
StyD4I	CCNGG	6 cut(s)	169, 578, 761, 1112, 1172, 1238
StyI	CCWWGG	2 cut(s)	314, 1324
TaaI	ACNGT	5 cut(s)	563, 645, 982, 1045, 1379
TaiI	ACGT	6 cut(s)	935, 1112, 1130, 1215, 1235, 1370
TaqI	TCGA	1 cut(s)	1085
TaqII	GACCGA	1 cut(s)	1103
TasI	AATT	2 cut(s)	19, 1303
TauI	GCSGC	1 cut(s)	665
TfiI	GAWTC	2 cut(s)	824, 1189
Tru1I	TTAA	3 cut(s)	74, 801, 1209
Tru9I	TTAA	3 cut(s)	74, 801, 1209
TscAI	CASTG	4 cut(s)	417, 430, 961, 1354
TseFI	GTSAC	2 cut(s)	416, 476
Tsp45I	GTSAC	2 cut(s)	416, 476
TspDTI	ATGAA	4 cut(s)	380, 583, 887, 1088
TspRI	CASTG	4 cut(s)	417, 430, 961, 1354
VpaK11BI	GGWCC	1 cut(s)	766
XagI	CCTNNNNNAGG	1 cut(s)	968
XceI	RCATGY	1 cut(s)	1228
XspI	CTAG	1 cut(s)	1097

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.