Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001312.1

Orthogroup ID

OG0009751

Physical Location & Seq

Genomic Coordinates Reverse (-)

11773 .. 14290

Gene Structure 2518 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001312.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

atgtccaattcaacttctttgtccactgacgaagcagctagtgtttcttctggttccagactcccagatcactttgcttgcttaaaccctctttcagtttcaaccattatctcttctcctctcgaccatcagcagccgccgcagaagattaaaaagaagagaagcctccctggaaacccagaccctgatgccgaagtgatagcattatcccctaaaacgctcctggccacgaacagattcgtgtgcgagatttgcaacaaggggttccagagggaccagaacctccagcttcacaggagaggccacaacctgccatggaagctgaagcaaagaagcagcaaagacttgatcaaaaagagagcctatgtgtgccctgagccctcttgtgttcatcaccacccttcaagagcacttggggatctcacagggatcaagaagcacttttgcagaaagcatggggagaagaagtggaagtgtgacaagtgttcgaagatctatgctgttcaatctgattggaaagctcactccaaaacctgtggtacaagagaatatagatgtgactgtggaacccttttctccaggaaggatagcttcataactcacagagccttctgtgatgctctggctgaagaaagtgcaaggctctcagcaagccaattagctattgccaccacacctcaaatctctctcttccctttcccaaaccactctcacttcacaaacccacccccattaccattcaccaccctctctccctgggacccaccccacaaccctaaccctaatatcacccaaaacccacttcaccaccacgtcaagcctgaagaaactcaccaccacttccccctaaacccaactctcttccaagagaccccatcacctcaacacaagactctgataacctctcccttccagcacctccacgtcagcacacagccaacctcaagtgtcgccacgtcagctcacctgtcagccactgctctgctccaaaaggccgccaccattggcgcctccgccgctgggaagcagcagtctcagtcagctggcttggctgagtttgggacattaggagggtcacgtccggagaactcaccacgtggcagaagactgaccgtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2 zf-C2H2_jaz

Protein Analysis

372

Amino Acids

41.08

Weight (kDa)

9.55

Isoelectric Point (pI)

55.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009751)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02670 AT4G02670
fragaria_vesca	FvH4_2g22950
malus_domestica	MD03G1258200.v1.1 MD11G1278800.v1.1
prunus_persica	Prupe.8G234800_v2.0.a1
pyrus_communis	pycom03g20450 pycom11g24640
rosa_chinensis	RchiOBHm_Chr6g0289921 RchiOBHm_Chr6g0289971
rosa_laevigata	RLG00000012256
rosa_multiflora	Rmu_sc0001312.1_g000003 Rmu_sc0003927.1_g000012 Rmu_sc0029149.1_g000001
rosa_roxburghii	Rroxscaffold_7G00177470
rosa_rugosa	Rorug06G0208100
rosa_samantha	Rh6BG326500 Rh6CG332400 Rh6DG318200
rosa_wichuraiana	Rw0G009790 Rw6G027550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	318
AccB1I	GGYRCC	1 cut(s)	1007
AccIII	TCCGGA	1 cut(s)	1081
AciI	CCGC	5 cut(s)	137, 140, 996, 1014, 1017
AclWI	GGATC	2 cut(s)	426, 437
AcoI	YGGCCR	1 cut(s)	225
AcuI	CTGAAG	3 cut(s)	344, 648, 843
AcvI	CACGTG	1 cut(s)	1097
AcyI	GRCGYC	1 cut(s)	1008
AdeI	CACNNNGTG	1 cut(s)	1097
AfaI	GTAC	1 cut(s)	541
AfiI	CCNNNNNNNGG	1 cut(s)	1020
AgsI	TTSAA	4 cut(s)	12, 102, 405, 506
AhdI	GACNNNNNGTC	1 cut(s)	1112
AjiI	CACGTC	4 cut(s)	814, 925, 957, 1079
AjnI	CCWGG	4 cut(s)	169, 222, 578, 755
AjuI	GAANNNNNNNTTGG	2 cut(s)	786, 818
AluBI	AGCT	8 cut(s)	38, 289, 322, 521, 591, 662, 962, 1043
AluI	AGCT	8 cut(s)	38, 289, 322, 521, 591, 662, 962, 1043
Alw21I	GWGCWC	1 cut(s)	412
Alw26I	GTCTC	2 cut(s)	863, 1038
AlwI	GGATC	2 cut(s)	426, 437
AlwNI	CAGNNNCTG	2 cut(s)	185, 977
Aor13HI	TCCGGA	1 cut(s)	1081
AoxI	GGCC	3 cut(s)	225, 301, 993
ApeKI	GCWGC	4 cut(s)	35, 133, 336, 1027
Asp700I	GAANNNNTTC	1 cut(s)	236
AspLEI	GCGC	1 cut(s)	1010
AspS9I	GGNCC	2 cut(s)	274, 760
AsuHPI	GGTGA	8 cut(s)	386, 733, 781, 797, 824, 870, 956, 1083
AsuII	TTCGAA	1 cut(s)	488
AvaII	GGWCC	2 cut(s)	274, 760
BaeGI	GKGCMC	1 cut(s)	374
BalI	TGGCCA	1 cut(s)	227
BanI	GGYRCC	1 cut(s)	1007
BanII	GRGCYC	1 cut(s)	381
BbrPI	CACGTG	1 cut(s)	1097
BbsI	GAAGAC	1 cut(s)	1111
Bbv12I	GWGCWC	1 cut(s)	412
BbvI	GCAGC	4 cut(s)	47, 145, 348, 1039
BccI	CCATC	2 cut(s)	135, 883
BciT130I	CCWGG	4 cut(s)	171, 224, 580, 757
BclI	TGATCA	1 cut(s)	348
BcoDI	GTCTC	2 cut(s)	863, 1038
BfaI	CTAG	1 cut(s)	39
BfoI	RGCGCY	1 cut(s)	1011
BfuAI	ACCTGC	1 cut(s)	318
BglII	AGATCT	1 cut(s)	492
BisI	GCNGC	8 cut(s)	36, 134, 137, 140, 337, 996, 1017, 1028
BlsI	GCNGC	8 cut(s)	37, 135, 138, 141, 338, 997, 1018, 1029
Bme1390I	CCNGG	4 cut(s)	171, 224, 580, 757
Bme18I	GGWCC	2 cut(s)	274, 760
BmeRI	GACNNNNNGTC	1 cut(s)	1112
BmgBI	CACGTC	4 cut(s)	814, 925, 957, 1079
BmgT120I	GGNCC	2 cut(s)	274, 760
BmiI	GGNNCC	7 cut(s)	55, 266, 275, 568, 761, 762, 1009
BmrFI	CCNGG	4 cut(s)	171, 224, 580, 757
BmsI	GCATC	2 cut(s)	178, 607
BpiI	GAAGAC	1 cut(s)	1111
BpmI	CTGGAG	2 cut(s)	269, 562
Bpu10I	CCTNAGC	1 cut(s)	375
Bpu14I	TTCGAA	1 cut(s)	488
BpuEI	CTTGAG	1 cut(s)	928
BsaAI	YACGTR	1 cut(s)	1097
BsaHI	GRCGYC	1 cut(s)	1008
BsaI	GGTCTC	1 cut(s)	863
BsaJI	CCNNGG	4 cut(s)	169, 314, 755, 756
BsaWI	WCCGGW	1 cut(s)	1081
BsaXI	ACNNNNNCTCC	4 cut(s)	452, 482, 736, 766
Bsc4I	CCNNNNNNNGG	1 cut(s)	1020
BseAI	TCCGGA	1 cut(s)	1081
BseBI	CCWGG	4 cut(s)	171, 224, 580, 757
BseDI	CCNNGG	4 cut(s)	169, 314, 755, 756
BseLI	CCNNNNNNNGG	1 cut(s)	1020
BseMII	CTCAG	4 cut(s)	366, 660, 1044, 1049
BseRI	GAGGAG	1 cut(s)	108
BseSI	GKGCMC	1 cut(s)	374
BseXI	GCAGC	4 cut(s)	47, 145, 348, 1039
BseYI	CCCAGC	1 cut(s)	1019
BshFI	GGCC	3 cut(s)	227, 303, 995
BshNI	GGYRCC	1 cut(s)	1007
BsiHKAI	GWGCWC	1 cut(s)	412
BsiSI	CCGG	1 cut(s)	1082
BslFI	GGGAC	3 cut(s)	287, 773, 1075
BslI	CCNNNNNNNGG	1 cut(s)	1020
BsmAI	GTCTC	2 cut(s)	863, 1038
BsmFI	GGGAC	3 cut(s)	287, 773, 1075
BsnI	GGCC	3 cut(s)	227, 303, 995
Bso31I	GGTCTC	1 cut(s)	863
Bsp119I	TTCGAA	1 cut(s)	488
Bsp1286I	GDGCHC	3 cut(s)	374, 381, 412
Bsp13I	TCCGGA	1 cut(s)	1081
Bsp143I	GATC	5 cut(s)	67, 348, 418, 429, 492
Bsp19I	CCATGG	1 cut(s)	314
BspACI	CCGC	5 cut(s)	137, 140, 996, 1014, 1017
BspANI	GGCC	3 cut(s)	227, 303, 995
BspCNI	CTCAG	4 cut(s)	367, 659, 1045, 1048
BspEI	TCCGGA	1 cut(s)	1081
BspLI	GGNNCC	7 cut(s)	55, 266, 275, 568, 761, 762, 1009
BspMI	ACCTGC	1 cut(s)	318
BspPI	GGATC	2 cut(s)	426, 437
BspT104I	TTCGAA	1 cut(s)	488
BspT107I	GGYRCC	1 cut(s)	1007
BspTNI	GGTCTC	1 cut(s)	863
BssECI	CCNNGG	4 cut(s)	169, 314, 755, 756
BssMI	GATC	5 cut(s)	67, 348, 418, 429, 492
BssNI	GRCGYC	1 cut(s)	1008
BssT1I	CCWWGG	1 cut(s)	314
Bst2UI	CCWGG	4 cut(s)	171, 224, 580, 757
Bst4CI	ACNGT	2 cut(s)	563, 1114
Bst6I	CTCTTC	4 cut(s)	118, 152, 695, 866
BstACI	GRCGYC	1 cut(s)	1008
BstBAI	YACGTR	1 cut(s)	1097
BstBI	TTCGAA	1 cut(s)	488
BstC8I	GCNNGC	3 cut(s)	79, 652, 1045
BstDEI	CTNAG	4 cut(s)	375, 646, 1035, 1053
BstDSI	CCRYGG	1 cut(s)	314
BstH2I	RGCGCY	1 cut(s)	1011
BstHHI	GCGC	1 cut(s)	1010
BstKTI	GATC	5 cut(s)	70, 351, 421, 432, 495
BstMAI	GTCTC	2 cut(s)	863, 1038
BstMBI	GATC	5 cut(s)	67, 348, 418, 429, 492
BstMWI	GCNNNNNNNGC	6 cut(s)	139, 252, 319, 959, 1016, 1049
BstNI	CCWGG	4 cut(s)	171, 224, 580, 757
BstSCI	CCNGG	4 cut(s)	169, 222, 578, 755
BstSLI	GKGCMC	1 cut(s)	374
BstV1I	GCAGC	4 cut(s)	47, 145, 348, 1039
BstV2I	GAAGAC	1 cut(s)	1111
BstX2I	RGATCY	2 cut(s)	418, 492
BstYI	RGATCY	2 cut(s)	418, 492
BsuRI	GGCC	3 cut(s)	227, 303, 995
BtgI	CCRYGG	1 cut(s)	314
BtrI	CACGTC	4 cut(s)	814, 925, 957, 1079
BtsI	GCAGTG	1 cut(s)	975
BtsIMutI	CAGTG	2 cut(s)	24, 975
BveI	ACCTGC	1 cut(s)	318
Cac8I	GCNNGC	3 cut(s)	79, 652, 1045
CaiI	CAGNNNCTG	2 cut(s)	185, 977
CfoI	GCGC	1 cut(s)	1010
Cfr13I	GGNCC	2 cut(s)	274, 760
Csp6I	GTAC	1 cut(s)	540
CspCI	CAANNNNNGTGG	2 cut(s)	517, 552
CviAII	CATG	2 cut(s)	315, 455
CviQI	GTAC	1 cut(s)	540
DdeI	CTNAG	4 cut(s)	375, 646, 1035, 1053
DinI	GGCGCC	1 cut(s)	1009
DpnI	GATC	5 cut(s)	69, 350, 420, 431, 494
DpnII	GATC	5 cut(s)	67, 348, 418, 429, 492
DraIII	CACNNNGTG	1 cut(s)	1097
DriI	GACNNNNNGTC	1 cut(s)	1112
EaeI	YGGCCR	1 cut(s)	225
Eam1104I	CTCTTC	4 cut(s)	118, 152, 695, 866
Eam1105I	GACNNNNNGTC	1 cut(s)	1112
EarI	CTCTTC	4 cut(s)	118, 152, 695, 866
EciI	GGCGGA	1 cut(s)	1003
Eco130I	CCWWGG	1 cut(s)	314
Eco24I	GRGCYC	1 cut(s)	381
Eco31I	GGTCTC	1 cut(s)	863
Eco47I	GGWCC	2 cut(s)	274, 760
Eco57I	CTGAAG	3 cut(s)	344, 648, 843
Eco72I	CACGTG	1 cut(s)	1097
EcoO109I	RGGNCCY	1 cut(s)	760
EcoRII	CCWGG	4 cut(s)	169, 222, 578, 755
EcoT14I	CCWWGG	1 cut(s)	314
EcoT38I	GRGCYC	1 cut(s)	381
EgeI	GGCGCC	1 cut(s)	1009
EheI	GGCGCC	1 cut(s)	1009
ErhI	CCWWGG	1 cut(s)	314
FaeI	CATG	2 cut(s)	318, 458
FaiI	YATR	6 cut(s)	316, 366, 456, 498, 552, 596
FalI	AAGNNNNNCTT	4 cut(s)	425, 457, 575, 607
FaqI	GGGAC	3 cut(s)	287, 773, 1075
FatI	CATG	2 cut(s)	314, 454
FbaI	TGATCA	1 cut(s)	348
Fnu4HI	GCNGC	8 cut(s)	36, 134, 137, 140, 337, 996, 1017, 1028
FriOI	GRGCYC	1 cut(s)	381
Fsp4HI	GCNGC	8 cut(s)	36, 134, 137, 140, 337, 996, 1017, 1028
FspBI	CTAG	1 cut(s)	39
GlaI	GCGC	1 cut(s)	1009
GluI	GCNGC	8 cut(s)	36, 134, 137, 140, 337, 996, 1017, 1028
GsaI	CCCAGC	1 cut(s)	1023
GsuI	CTGGAG	2 cut(s)	269, 562
HaeII	RGCGCY	1 cut(s)	1011
HaeIII	GGCC	3 cut(s)	227, 303, 995
HapII	CCGG	1 cut(s)	1082
HhaI	GCGC	1 cut(s)	1010
Hin1I	GRCGYC	1 cut(s)	1008
Hin1II	CATG	2 cut(s)	318, 458
Hin6I	GCGC	1 cut(s)	1008
HinP1I	GCGC	1 cut(s)	1008
HinfI	GANTC	3 cut(s)	60, 237, 892
HpaII	CCGG	1 cut(s)	1082
HphI	GGTGA	8 cut(s)	386, 733, 781, 797, 824, 870, 956, 1083
Hpy166II	GTNNAC	1 cut(s)	24
Hpy188I	TCNGA	3 cut(s)	511, 897, 1118
Hpy188III	TCNNGA	6 cut(s)	57, 122, 268, 405, 433, 1082
Hpy8I	GTNNAC	1 cut(s)	24
HpyAV	CCTTC	4 cut(s)	411, 577, 619, 919
HpyCH4III	ACNGT	2 cut(s)	563, 1114
HpyCH4IV	ACGT	5 cut(s)	813, 924, 956, 1078, 1096
HpyCH4V	TGCA	3 cut(s)	255, 447, 638
HpyF10VI	GCNNNNNNNGC	6 cut(s)	139, 252, 319, 959, 1016, 1049
HpyF3I	CTNAG	4 cut(s)	375, 646, 1035, 1053
HpySE526I	ACGT	5 cut(s)	813, 924, 956, 1078, 1096
Hsp92I	GRCGYC	1 cut(s)	1008
Hsp92II	CATG	2 cut(s)	318, 458
HspAI	GCGC	1 cut(s)	1008
KasI	GGCGCC	1 cut(s)	1007
KflI	GGGWCCC	1 cut(s)	760
Kpn2I	TCCGGA	1 cut(s)	1081
Ksp22I	TGATCA	1 cut(s)	348
Kzo9I	GATC	5 cut(s)	67, 348, 418, 429, 492
LmnI	GCTCC	2 cut(s)	225, 990
Lsp1109I	GCAGC	4 cut(s)	47, 145, 348, 1039
LweI	GCATC	2 cut(s)	178, 607
MaeI	CTAG	1 cut(s)	39
MaeII	ACGT	5 cut(s)	813, 924, 956, 1078, 1096
MaeIII	GTNAC	3 cut(s)	476, 557, 1074
MalI	GATC	5 cut(s)	69, 350, 420, 431, 494
MboI	GATC	5 cut(s)	67, 348, 418, 429, 492
MflI	RGATCY	2 cut(s)	418, 492
MhlI	GDGCHC	3 cut(s)	374, 381, 412
MlsI	TGGCCA	1 cut(s)	227
MluCI	AATT	2 cut(s)	7, 656
MluNI	TGGCCA	1 cut(s)	227
Mly113I	GGCGCC	1 cut(s)	1008
MlyI	GAGTC	2 cut(s)	54, 886
Mox20I	TGGCCA	1 cut(s)	227
MroI	TCCGGA	1 cut(s)	1081
MroXI	GAANNNNTTC	1 cut(s)	236
MscI	TGGCCA	1 cut(s)	227
MseI	TTAA	2 cut(s)	83, 150
Msp20I	TGGCCA	1 cut(s)	227
MspA1I	CMGCKG	2 cut(s)	1019, 1043
MspI	CCGG	1 cut(s)	1082
MspR9I	CCNGG	4 cut(s)	171, 224, 580, 757
MvaI	CCWGG	4 cut(s)	171, 224, 580, 757
MwoI	GCNNNNNNNGC	6 cut(s)	139, 252, 319, 959, 1016, 1049
NarI	GGCGCC	1 cut(s)	1008
NcoI	CCATGG	1 cut(s)	314
NdeII	GATC	5 cut(s)	67, 348, 418, 429, 492
NlaIII	CATG	2 cut(s)	318, 458
NlaIV	GGNNCC	7 cut(s)	55, 266, 275, 568, 761, 762, 1009
NmuCI	GTSAC	3 cut(s)	476, 557, 1074
NspV	TTCGAA	1 cut(s)	488
PasI	CCCWGGG	1 cut(s)	756
PdmI	GAANNNNTTC	1 cut(s)	236
PfeI	GAWTC	1 cut(s)	237
PfoI	TCCNGGA	1 cut(s)	578
PkrI	GCNGC	8 cut(s)	37, 135, 138, 141, 338, 997, 1018, 1029
PleI	GAGTC	2 cut(s)	54, 886
PluTI	GGCGCC	1 cut(s)	1011
PmaCI	CACGTG	1 cut(s)	1097
PmlI	CACGTG	1 cut(s)	1097
PpsI	GAGTC	2 cut(s)	54, 886
Ppu21I	YACGTR	1 cut(s)	1097
PpuMI	RGGWCCY	1 cut(s)	760
Psp5II	RGGWCCY	1 cut(s)	760
Psp6I	CCWGG	4 cut(s)	169, 222, 578, 755
PspCI	CACGTG	1 cut(s)	1097
PspFI	CCCAGC	1 cut(s)	1019
PspGI	CCWGG	4 cut(s)	169, 222, 578, 755
PspN4I	GGNNCC	7 cut(s)	55, 266, 275, 568, 761, 762, 1009
PspPI	GGNCC	2 cut(s)	274, 760
PspPPI	RGGWCCY	1 cut(s)	760
PstNI	CAGNNNCTG	2 cut(s)	185, 977
PsuI	RGATCY	2 cut(s)	418, 492
PvuII	CAGCTG	1 cut(s)	1043
RsaI	GTAC	1 cut(s)	541
RsaNI	GTAC	1 cut(s)	540
SaqAI	TTAA	2 cut(s)	83, 150
SatI	GCNGC	8 cut(s)	36, 134, 137, 140, 337, 996, 1017, 1028
Sau3AI	GATC	5 cut(s)	67, 348, 418, 429, 492
Sau96I	GGNCC	2 cut(s)	274, 760
SchI	GAGTC	2 cut(s)	54, 886
ScrFI	CCNGG	4 cut(s)	171, 224, 580, 757
SduI	GDGCHC	3 cut(s)	374, 381, 412
SfaNI	GCATC	2 cut(s)	178, 607
SfoI	GGCGCC	1 cut(s)	1009
SfuI	TTCGAA	1 cut(s)	488
SinI	GGWCC	2 cut(s)	274, 760
SmlI	CTYRAG	1 cut(s)	943
SmoI	CTYRAG	1 cut(s)	943
Sse9I	AATT	2 cut(s)	7, 656
SsiI	CCGC	5 cut(s)	137, 140, 996, 1014, 1017
SspDI	GGCGCC	1 cut(s)	1007
SspMI	CTAG	1 cut(s)	39
StyD4I	CCNGG	4 cut(s)	169, 222, 578, 755
StyI	CCWWGG	1 cut(s)	314
TaaI	ACNGT	2 cut(s)	563, 1114
TaiI	ACGT	5 cut(s)	816, 927, 959, 1081, 1099
TaqI	TCGA	2 cut(s)	123, 488
TasI	AATT	2 cut(s)	7, 656
TauI	GCSGC	4 cut(s)	139, 142, 998, 1019
TfiI	GAWTC	1 cut(s)	237
Tru1I	TTAA	2 cut(s)	83, 150
Tru9I	TTAA	2 cut(s)	83, 150
TscAI	CASTG	2 cut(s)	31, 982
TseFI	GTSAC	3 cut(s)	476, 557, 1074
TseI	GCWGC	4 cut(s)	35, 133, 336, 1027
Tsp45I	GTSAC	3 cut(s)	476, 557, 1074
TspDTI	ATGAA	2 cut(s)	380, 583
TspRI	CASTG	2 cut(s)	31, 982
VpaK11BI	GGWCC	2 cut(s)	274, 760
XmnI	GAANNNNTTC	1 cut(s)	236
XspI	CTAG	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.