MD11G1278800.v1.1

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0009751
Physical Location & Seq
Reverse (-)
39594079 .. 39597509
3431 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1278800.v1.1.491

Sequence Viewer

Length: 1401 bp
ATGTTTCCAATCTCCATGTCCAATTCCACTTCTTTGTCTGAGGAAGCTAACAGTGTTTCTTCAGACTTTGCAGCTGCCTTAAACCCTCTTCTCCTTTCCACCAATATTTCTTCGCATCAGTCTGATCAGCCACCCAACAAAATTAAAAAGAAAAGAAGCCTCCCCGGAAACCCCGATCCAGATGCTGAAGTGATTGCATTATCCCCAAAAACCCTACTTGCCACAAACAGATTTGTGTGTGAAATTTGCAACAAGGGTTTTCAGAGGGATCAAAACCTGCAGCTTCACAGGAGAGGCCACAACCTTCCATGGAAGCTGAAGCAAAGGAACAGCAACGATCAGATCAGAAAGAGAGCCTATGTTTGTCCTGAGCCTTCATGTGTTCATCACCATCCTTCAAGAGCACTTGGTGACCTCACAGGGATCAAAAAACACTTTTGCAGGAAGCATGGGGAGAAGAAGTGGAAGTGTGACAAGTGCTCCAAGATCTATGCTGTTCAATCTGATTGGAAGGCTCACTCCAAAACCTGTGGTACAAGAGAATATAGATGTGACTGTGGAACCCTTTTCTCCAGGAAGGATAGCTTCATAACTCACAGGGCGTTTTGTGATGCTTTGGCTGAAGAAAGTGCAAGACTCTCAGCAAATCAATTTGCTACCGCCACAACTACCACCGCTGCAATTACACCTCAAATCTCCCTCTTCCCTTTTCCAACCCACCAACAACAGCACTTCACAAACCCAAACACACCAATGCCTCCCTTCACCACCATCCCCCTCACCCCATGGGACCTACCACAATCTCATCAGAACCCTAACAGTAATCCCACCCAAAACTCCCCACTTCATCATCTCATCAAGCCTGAGTCTCATCGCCATTTCCCACCACGACCGCCACAACCACAACAACCACACAATGGTCTGATCACCTCACCCTTCCAAAACCTCCACGTCAGCACACAACCCAACTCCAACCCCGCCACGTCATCAGCCCACCTTTCAGCTACTGCACTCCTCCAAAAGGCTGCAGCCGTTGGTGCAGCAGCAGCCCAACAGGGCCAGTCAGCGGGCTTGACCGTGGGAGAGTTTGGAACGGCGAGCCACATGATCTCCACCGAGTATCTAGGCGGGTTCACGTCCGGAGATGTCTCCACGTGGCGCAAGACTGACAGTCTGACAAGGGACTTTCTAGGGCTGAATGGCGATGGCACTGGGAATAATAATAATAATAATAACAACGTTCGCGCTGTTCACGTTAAGGACATGCTACCGTACGCCGGTGGAGTAGGGTTCCATCAGCCGCTGTCTGAGCGCCTTCGTGGCCCTGATTCGCAGCTGAAGCCCCAGGGTTTCGGGTTCGCTGAGACTACTACTGCTTCGGAAACGTGGGGAGACTATTGA

Protein Analysis

467

Amino Acids

51.23

Weight (kDa)

9.2

Isoelectric Point (pI)

42.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2H2-2nd_BIRD-IDD PF22996 116 - 150 3.4e-21 BIRD-IDD transcription factor, second C2H2 zinc finger
C2CH-3rd_BIRD-IDD PF22995 154 - 178 2.5e-14 BIRD-IDD transcription factor, third C2HC zinc finger
C2CH-4th_BIRD-IDD PF22992 181 - 219 1.6e-23 BIRD-IDD transcription factor, fourth C2HC zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 285
AccB7I CCANNNNNTGG 1 cut(s) 917
AccII CGCG 1 cut(s) 1245
AccIII TCCGGA 1 cut(s) 1139
AciI CCGC 7 cut(s) 660, 675, 893, 978, 1067, 1128, 1301
AclI AACGTT 1 cut(s) 1239
AclWI GGATC 3 cut(s) 170, 276, 431
AcsI RAATTY 1 cut(s) 243
AcuI CTGAAG 5 cut(s) 45, 207, 338, 642, 1358
AcvI CACGTG 1 cut(s) 1155
AdeI CACNNNGTG 1 cut(s) 410
AfaI GTAC 2 cut(s) 535, 1274
AfiI CCNNNNNNNGG 4 cut(s) 917, 1021, 1066, 1277
AgsI TTSAA 2 cut(s) 399, 500
AhdI GACNNNNNGTC 1 cut(s) 1170
AjiI CACGTC 3 cut(s) 952, 984, 1137
AjnI CCWGG 2 cut(s) 572, 1344
AluBI AGCT 7 cut(s) 47, 74, 283, 316, 585, 1004, 1336
AluI AGCT 7 cut(s) 47, 74, 283, 316, 585, 1004, 1336
Alw21I GWGCWC 2 cut(s) 406, 482
Alw26I GTCTC 4 cut(s) 873, 1153, 1358, 1386
AlwI GGATC 3 cut(s) 170, 276, 431
AlwNI CAGNNNCTG 3 cut(s) 185, 1007, 1303
Aor13HI TCCGGA 1 cut(s) 1139
AoxI GGCC 3 cut(s) 295, 1057, 1321
ApoI RAATTY 1 cut(s) 243
AspLEI GCGC 3 cut(s) 1161, 1247, 1314
AspS9I GGNCC 3 cut(s) 790, 1057, 1322
AsuC2I CCSGG 1 cut(s) 165
AsuHPI GGTGA 6 cut(s) 380, 422, 757, 772, 919, 924
AvaII GGWCC 1 cut(s) 790
BbrPI CACGTG 1 cut(s) 1155
Bbv12I GWGCWC 2 cut(s) 406, 482
BccI CCATC 4 cut(s) 399, 779, 1199, 1302
BceAI ACGGC 2 cut(s) 1016, 1110
BcgI CGANNNNNNTGC 2 cut(s) 164, 198
BciT130I CCWGG 2 cut(s) 574, 1346
BclI TGATCA 2 cut(s) 124, 924
BcnI CCSGG 1 cut(s) 165
BcoDI GTCTC 4 cut(s) 873, 1153, 1358, 1386
BfaI CTAG 2 cut(s) 1124, 1190
BfmI CTRYAG 2 cut(s) 278, 1026
BfoI RGCGCY 1 cut(s) 1315
BfuAI ACCTGC 1 cut(s) 285
BglI GCCNNNNNGGC 1 cut(s) 1320
BglII AGATCT 1 cut(s) 486
Bme1390I CCNGG 3 cut(s) 165, 574, 1346
Bme18I GGWCC 1 cut(s) 790
BmeRI GACNNNNNGTC 1 cut(s) 1170
BmgBI CACGTC 3 cut(s) 952, 984, 1137
BmgT120I GGNCC 3 cut(s) 790, 1057, 1322
BmiI GGNNCC 3 cut(s) 562, 791, 1292
BmrFI CCNGG 3 cut(s) 165, 574, 1346
BmrI ACTGGG 1 cut(s) 1221
BmsI GCATC 3 cut(s) 124, 172, 601
BmuI ACTGGG 1 cut(s) 1221
BpmI CTGGAG 1 cut(s) 556
Bpu10I CCTNAGC 1 cut(s) 369
BpuMI CCSGG 1 cut(s) 165
BsaAI YACGTR 1 cut(s) 1155
BsaJI CCNNGG 6 cut(s) 163, 308, 785, 1077, 1344, 1345
BsaWI WCCGGW 1 cut(s) 1139
BsaXI ACNNNNNCTCC 6 cut(s) 446, 464, 476, 494, 1094, 1124
Bsc4I CCNNNNNNNGG 4 cut(s) 917, 1021, 1066, 1277
Bse118I RCCGGY 1 cut(s) 1277
Bse1I ACTGG 2 cut(s) 1060, 1216
BseAI TCCGGA 1 cut(s) 1139
BseBI CCWGG 2 cut(s) 574, 1346
BseDI CCNNGG 6 cut(s) 163, 308, 785, 1077, 1344, 1345
BseGI GGATG 2 cut(s) 391, 771
BseLI CCNNNNNNNGG 4 cut(s) 917, 1021, 1066, 1277
BseMII CTCAG 6 cut(s) 30, 360, 654, 855, 1299, 1353
BseNI ACTGG 2 cut(s) 1060, 1216
BseRI GAGGAG 1 cut(s) 1004
BsgI GTGCAG 2 cut(s) 993, 1059
Bsh1236I CGCG 1 cut(s) 1245
Bsh1285I CGRYCG 1 cut(s) 893
BshFI GGCC 3 cut(s) 297, 1059, 1323
BsiEI CGRYCG 1 cut(s) 893
BsiHKAI GWGCWC 2 cut(s) 406, 482
BsiSI CCGG 3 cut(s) 165, 1140, 1278
BsiWI CGTACG 1 cut(s) 1272
BslFI GGGAC 2 cut(s) 803, 1196
BslI CCNNNNNNNGG 4 cut(s) 917, 1021, 1066, 1277
BsmAI GTCTC 4 cut(s) 873, 1153, 1358, 1386
BsmFI GGGAC 2 cut(s) 803, 1196
BsnI GGCC 3 cut(s) 297, 1059, 1323
Bsp1286I GDGCHC 2 cut(s) 406, 482
Bsp13I TCCGGA 1 cut(s) 1139
Bsp143I GATC 9 cut(s) 124, 175, 268, 337, 342, 423, 486, 924, 1107
Bsp19I CCATGG 2 cut(s) 308, 785
BspACI CCGC 7 cut(s) 660, 675, 893, 978, 1067, 1128, 1301
BspANI GGCC 3 cut(s) 297, 1059, 1323
BspCNI CTCAG 6 cut(s) 31, 361, 653, 856, 1300, 1354
BspEI TCCGGA 1 cut(s) 1139
BspFNI CGCG 1 cut(s) 1245
BspLI GGNNCC 3 cut(s) 562, 791, 1292
BspMAI CTGCAG 2 cut(s) 282, 1030
BspMI ACCTGC 1 cut(s) 285
BspPI GGATC 3 cut(s) 170, 276, 431
BsrFI RCCGGY 1 cut(s) 1277
BsrI ACTGG 2 cut(s) 1060, 1216
BssAI RCCGGY 1 cut(s) 1277
BssECI CCNNGG 6 cut(s) 163, 308, 785, 1077, 1344, 1345
BssMI GATC 9 cut(s) 124, 175, 268, 337, 342, 423, 486, 924, 1107
BssT1I CCWWGG 2 cut(s) 308, 785
Bst2UI CCWGG 2 cut(s) 574, 1346
Bst4CI ACNGT 6 cut(s) 53, 557, 821, 1078, 1172, 1272
Bst6I CTCTTC 2 cut(s) 93, 707
BstBAI YACGTR 1 cut(s) 1155
BstC8I GCNNGC 2 cut(s) 1069, 1099
BstDEI CTNAG 6 cut(s) 39, 369, 640, 864, 1308, 1362
BstDSI CCRYGG 3 cut(s) 308, 785, 1077
BstEII GGTNACC 1 cut(s) 410
BstENI CCTNNNNNAGG 1 cut(s) 1019
BstF5I GGATG 2 cut(s) 391, 771
BstFNI CGCG 1 cut(s) 1245
BstH2I RGCGCY 1 cut(s) 1315
BstHHI GCGC 3 cut(s) 1161, 1247, 1314
BstKTI GATC 9 cut(s) 127, 178, 271, 340, 345, 426, 489, 927, 1110
BstMAI GTCTC 4 cut(s) 873, 1153, 1358, 1386
BstMBI GATC 9 cut(s) 124, 175, 268, 337, 342, 423, 486, 924, 1107
BstMCI CGRYCG 1 cut(s) 893
BstMWI GCNNNNNNNGC 5 cut(s) 1037, 1046, 1309, 1320, 1339
BstNI CCWGG 2 cut(s) 574, 1346
BstNSI RCATGY 1 cut(s) 1267
BstPI GGTNACC 1 cut(s) 410
BstSCI CCNGG 3 cut(s) 163, 572, 1344
BstSFI CTRYAG 2 cut(s) 278, 1026
BstUI CGCG 1 cut(s) 1245
BstX2I RGATCY 1 cut(s) 486
BstYI RGATCY 1 cut(s) 486
BsuRI GGCC 3 cut(s) 297, 1059, 1323
BtgI CCRYGG 3 cut(s) 308, 785, 1077
BtgZI GCGATG 2 cut(s) 857, 1218
BtrI CACGTC 3 cut(s) 952, 984, 1137
BtsCI GGATG 2 cut(s) 391, 771
BtsIMutI CAGTG 2 cut(s) 58, 1209
BveI ACCTGC 1 cut(s) 285
Cac8I GCNNGC 2 cut(s) 1069, 1099
CaiI CAGNNNCTG 3 cut(s) 185, 1007, 1303
CfoI GCGC 3 cut(s) 1161, 1247, 1314
Cfr10I RCCGGY 1 cut(s) 1277
Cfr13I GGNCC 3 cut(s) 790, 1057, 1322
Csp6I GTAC 2 cut(s) 534, 1273
CspCI CAANNNNNGTGG 2 cut(s) 511, 546
CviAII CATG 7 cut(s) 16, 309, 378, 449, 786, 1105, 1264
CviQI GTAC 2 cut(s) 534, 1273
DdeI CTNAG 6 cut(s) 39, 369, 640, 864, 1308, 1362
DpnI GATC 9 cut(s) 126, 177, 270, 339, 344, 425, 488, 926, 1109
DpnII GATC 9 cut(s) 124, 175, 268, 337, 342, 423, 486, 924, 1107
DraIII CACNNNGTG 1 cut(s) 410
DriI GACNNNNNGTC 1 cut(s) 1170
Eam1104I CTCTTC 2 cut(s) 93, 707
Eam1105I GACNNNNNGTC 1 cut(s) 1170
EarI CTCTTC 2 cut(s) 93, 707
Eco130I CCWWGG 2 cut(s) 308, 785
Eco47I GGWCC 1 cut(s) 790
Eco57I CTGAAG 5 cut(s) 45, 207, 338, 642, 1358
Eco72I CACGTG 1 cut(s) 1155
Eco91I GGTNACC 1 cut(s) 410
EcoNI CCTNNNNNAGG 1 cut(s) 1019
EcoO109I RGGNCCY 1 cut(s) 790
EcoO65I GGTNACC 1 cut(s) 410
EcoRII CCWGG 2 cut(s) 572, 1344
EcoT14I CCWWGG 2 cut(s) 308, 785
ErhI CCWWGG 2 cut(s) 308, 785
FaeI CATG 7 cut(s) 19, 312, 381, 452, 789, 1108, 1267
FalI AAGNNNNNCTT 2 cut(s) 569, 601
FaqI GGGAC 2 cut(s) 803, 1196
FatI CATG 7 cut(s) 15, 308, 377, 448, 785, 1104, 1263
FauI CCCGC 3 cut(s) 985, 1060, 1121
FbaI TGATCA 2 cut(s) 124, 924
FokI GGATG 2 cut(s) 378, 758
FspBI CTAG 2 cut(s) 1124, 1190
GlaI GCGC 3 cut(s) 1160, 1246, 1313
GsuI CTGGAG 1 cut(s) 556
HaeII RGCGCY 1 cut(s) 1315
HaeIII GGCC 3 cut(s) 297, 1059, 1323
HapII CCGG 3 cut(s) 165, 1140, 1278
HhaI GCGC 3 cut(s) 1161, 1247, 1314
Hin1II CATG 7 cut(s) 19, 312, 381, 452, 789, 1108, 1267
Hin6I GCGC 3 cut(s) 1159, 1245, 1312
HinP1I GCGC 3 cut(s) 1159, 1245, 1312
HinfI GANTC 3 cut(s) 636, 866, 1328
HpaII CCGG 3 cut(s) 165, 1140, 1278
HphI GGTGA 6 cut(s) 380, 422, 757, 772, 919, 924
Hpy166II GTNNAC 2 cut(s) 1134, 1252
Hpy188III TCNNGA 4 cut(s) 179, 368, 399, 1140
Hpy8I GTNNAC 2 cut(s) 1134, 1252
HpyAV CCTTC 8 cut(s) 314, 384, 405, 505, 571, 772, 946, 1325
HpyCH4III ACNGT 6 cut(s) 53, 557, 821, 1078, 1172, 1272
HpyCH4IV ACGT 7 cut(s) 951, 983, 1136, 1154, 1239, 1254, 1385
HpyF10VI GCNNNNNNNGC 5 cut(s) 1037, 1046, 1309, 1320, 1339
HpyF3I CTNAG 6 cut(s) 39, 369, 640, 864, 1308, 1362
HpySE526I ACGT 7 cut(s) 951, 983, 1136, 1154, 1239, 1254, 1385
Hsp92II CATG 7 cut(s) 19, 312, 381, 452, 789, 1108, 1267
HspAI GCGC 3 cut(s) 1159, 1245, 1312
Kpn2I TCCGGA 1 cut(s) 1139
Ksp22I TGATCA 2 cut(s) 124, 924
Kzo9I GATC 9 cut(s) 124, 175, 268, 337, 342, 423, 486, 924, 1107
LmnI GCTCC 1 cut(s) 485
LweI GCATC 3 cut(s) 124, 172, 601
MaeI CTAG 2 cut(s) 1124, 1190
MaeII ACGT 7 cut(s) 951, 983, 1136, 1154, 1239, 1254, 1385
MaeIII GTNAC 3 cut(s) 410, 470, 551
MalI GATC 9 cut(s) 126, 177, 270, 339, 344, 425, 488, 926, 1109
MboI GATC 9 cut(s) 124, 175, 268, 337, 342, 423, 486, 924, 1107
MboII GAAGA 6 cut(s) 51, 80, 102, 469, 635, 694
MflI RGATCY 1 cut(s) 486
MhlI GDGCHC 2 cut(s) 406, 482
MluCI AATT 5 cut(s) 22, 141, 243, 650, 681
MlyI GAGTC 2 cut(s) 630, 875
MmeI TCCRAC 2 cut(s) 737, 996
MroI TCCGGA 1 cut(s) 1139
MseI TTAA 3 cut(s) 80, 144, 1257
MslI CAYNNNNRTG 1 cut(s) 752
MspA1I CMGCKG 5 cut(s) 74, 677, 1067, 1303, 1336
MspI CCGG 3 cut(s) 165, 1140, 1278
MspR9I CCNGG 3 cut(s) 165, 574, 1346
MvaI CCWGG 2 cut(s) 574, 1346
MvnI CGCG 1 cut(s) 1245
MwoI GCNNNNNNNGC 5 cut(s) 1037, 1046, 1309, 1320, 1339
NciI CCSGG 1 cut(s) 165
NcoI CCATGG 2 cut(s) 308, 785
NdeII GATC 9 cut(s) 124, 175, 268, 337, 342, 423, 486, 924, 1107
NlaIII CATG 7 cut(s) 19, 312, 381, 452, 789, 1108, 1267
NlaIV GGNNCC 3 cut(s) 562, 791, 1292
NmuCI GTSAC 3 cut(s) 410, 470, 551
NspI RCATGY 1 cut(s) 1267
PasI CCCWGGG 1 cut(s) 1345
PfeI GAWTC 1 cut(s) 1328
Pfl23II CGTACG 1 cut(s) 1272
PflMI CCANNNNNTGG 1 cut(s) 917
PfoI TCCNGGA 1 cut(s) 572
PleI GAGTC 2 cut(s) 630, 874
PmaCI CACGTG 1 cut(s) 1155
PmlI CACGTG 1 cut(s) 1155
PpsI GAGTC 2 cut(s) 630, 874
Ppu21I YACGTR 1 cut(s) 1155
PpuMI RGGWCCY 1 cut(s) 790
Psp1406I AACGTT 1 cut(s) 1239
Psp5II RGGWCCY 1 cut(s) 790
Psp6I CCWGG 2 cut(s) 572, 1344
PspCI CACGTG 1 cut(s) 1155
PspEI GGTNACC 1 cut(s) 410
PspGI CCWGG 2 cut(s) 572, 1344
PspLI CGTACG 1 cut(s) 1272
PspN4I GGNNCC 3 cut(s) 562, 791, 1292
PspPI GGNCC 3 cut(s) 790, 1057, 1322
PspPPI RGGWCCY 1 cut(s) 790
PstI CTGCAG 2 cut(s) 282, 1030
PstNI CAGNNNCTG 3 cut(s) 185, 1007, 1303
PsuI RGATCY 1 cut(s) 486
PvuII CAGCTG 2 cut(s) 74, 1336
RsaI GTAC 2 cut(s) 535, 1274
RsaNI GTAC 2 cut(s) 534, 1273
RseI CAYNNNNRTG 1 cut(s) 752
SaqAI TTAA 3 cut(s) 80, 144, 1257
Sau3AI GATC 9 cut(s) 124, 175, 268, 337, 342, 423, 486, 924, 1107
Sau96I GGNCC 3 cut(s) 790, 1057, 1322
SchI GAGTC 2 cut(s) 630, 875
ScrFI CCNGG 3 cut(s) 165, 574, 1346
SduI GDGCHC 2 cut(s) 406, 482
SfaNI GCATC 3 cut(s) 124, 172, 601
SfcI CTRYAG 2 cut(s) 278, 1026
SgrAI CRCCGGYG 1 cut(s) 1277
SinI GGWCC 1 cut(s) 790
SmiMI CAYNNNNRTG 1 cut(s) 752
Sse9I AATT 5 cut(s) 22, 141, 243, 650, 681
SsiI CCGC 7 cut(s) 660, 675, 893, 978, 1067, 1128, 1301
SspI AATATT 1 cut(s) 106
SspMI CTAG 2 cut(s) 1124, 1190
StyD4I CCNGG 3 cut(s) 163, 572, 1344
StyI CCWWGG 2 cut(s) 308, 785
TaaI ACNGT 6 cut(s) 53, 557, 821, 1078, 1172, 1272
TaiI ACGT 7 cut(s) 954, 986, 1139, 1157, 1242, 1257, 1388
TasI AATT 5 cut(s) 22, 141, 243, 650, 681
TauI GCSGC 1 cut(s) 1303
TfiI GAWTC 1 cut(s) 1328
Tru1I TTAA 3 cut(s) 80, 144, 1257
Tru9I TTAA 3 cut(s) 80, 144, 1257
TscAI CASTG 2 cut(s) 58, 1216
TseFI GTSAC 3 cut(s) 410, 470, 551
Tsp45I GTSAC 3 cut(s) 410, 470, 551
TspDTI ATGAA 4 cut(s) 366, 374, 577, 836
TspRI CASTG 2 cut(s) 58, 1216
Van91I CCANNNNNTGG 1 cut(s) 917
VpaK11BI GGWCC 1 cut(s) 790
XagI CCTNNNNNAGG 1 cut(s) 1019
XapI RAATTY 1 cut(s) 243
XceI RCATGY 1 cut(s) 1267
XspI CTAG 2 cut(s) 1124, 1190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.