Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013302

Physical Location & Seq

Genomic Coordinates Forward (+)

1258532 .. 1260696

Gene Structure 2165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G02820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1599 bp

ATGAATAAAAACATGTTGGTTCGCTCTGCCCGGCCAACCCTAGCCTCCATTCACCGCCTTTTCTCCGCCGCCGCCGCCGCGACTGTGGACACGGCGACGGCACCCGTGGTGAAGCCTCGCAGCGGAGGAGGAAAAGGAGGAGAATCGGCCAACAAAAAAGAAACGGTAGTTGGAGGAAGAGACACTCTAGGAGGGAGATTACTAAGCCTTGTGTATACGAAACGCAGCGCCGTTGTTACTATCCGTAAATGGAAAGAAGAAGGCCATTCCGTTCGCAAATACGAACTTAATCGTATCGTTAGAGAGCTTCGTAAGATCAAACGCTATAAACACGCTCTTGAGATATGTGAATGGATGGTTGTACAGGAAGATATAAAGCTACAAGCAGGTGATTATGCTGTACATTTGGATTTGATATCTAAAATCCGTGGTTTAAACAGTGCTGAGAAGTTTTTCGAAGATATGCCAGATCAAATGAGAGGTCATGCTGCGTGTACATCTCTTTTACATAGCTATGTGCAGAACAAGTTGTCTGATAAAGCTGAGGCATTGTTTGAGAAAATGGGTGAATGTGGTTTCTTGAAGTCTTGTTTGCCTTACAATCATATGTTATCGATGTATATATCGAGAGGACAGTTTGAGAAAGTCCCTGTGTTGATTAAGGAGTTGAAGATTAGAACATCTCCTGATATTGTTACTTATAATCTCTGGCTTACTGCGTTTGCTTCTGGAAATGATGTCGAGGGTGCGGAGAAAGTTTATCTTAAGGCGAAGGAAGAGAAGTTGAATCCGGATTGGGTGACTTATAGTGTGTTAACGAATTTGTATGCTAAGACTGATAATGTCGAAAAGGCGAGACTTGCTTTGAAGGAGATGGAGAAGTTGGTTTCTAAGAAGAACCGGGTTGCTTATGCTTCTCTTATTAGTCTGCATGCGAATTTGGGTGACAAAGATGGAGTGAACTTAACCTGGAAGAAGGTTAAGTCTTCTTTCAAGAAAATGAATGATGCGGAGTATCTCAGTATGATATCTGCGGTTGTGAAGCTTGGAGAGTTTGAACAAGCTAAAGGTTTGTATGACGAATGGGAATCTGTTTCGGGAACAGGAGATGCTAGAATCCCGAATCTAATCCTTGCTGAGTACATGAACAGAGATGAGGTTCTTCTAGGAGAAAAGTTTTACGAACGGATTGTGGAGAAAGGGATAAACCCGAGCTATTCTACATGGGAAATTCTCACATGGGCTTATTTGAAGCGTAAAGACATGGAGAAAGTATTAGATTGTTTTGGGAAAGCTATTGATTCTGTGAAGAAATGGACTGTGAATGTAAGATTGGTTAAAGGAGCGTGCAAGGAACTTGAGGAACAAGGGAATGTTAAAGGAGCAGAGAAGCTAATGACTCTGCTCCAAAAGGCTGGTTATGTGAACACTCAGCTCTACAATTCCTTGTTACGGACATACGCTAAAGCAGGGGAAATGGCACTCATAGTTGAAGAGCGAATGGCAAAGGATAATGTAGAGTTAGATGAAGAGACTAAGGAGCTTATAAGACTAACCAGTCAAATGCGTGTGACTGAAATCTCGTCCACCATTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

532

Amino Acids

60.13

Weight (kDa)

9.15

Isoelectric Point (pI)

28.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	229 - 277	1.8e-08	PPR repeat family
PPR_3	PF13812	229 - 277	7.7e-06	Pentatricopeptide repeat domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02820
fragaria_vesca	FvH4_2g23640
malus_domestica	MD03G1265900.v1.1
prunus_persica	Prupe.8G241600_v2.0.a1 Prupe.8G241600_v2.0.a1 Prupe.8G241600_v2.0.a1
pyrus_communis	pycom03g21240
rosa_chinensis	RchiOBHm_Chr6g0291111
rosa_laevigata	RLG00000012143
rosa_multiflora	Rmu_sc0004642.1_g000017 Rmu_sc0033743.1_g000001
rosa_roxburghii	Rroxscaffold_7G00176370
rosa_rugosa	Rorug06G0217700
rosa_samantha	Rh6AG327900 Rh6BG335400 Rh6CG341600 Rh6DG328800
rosa_wichuraiana	Rw6G028520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	702, 1547
AarI	CACCTGC	1 cut(s)	377
AasI	GACNNNNNNGTC	1 cut(s)	1557
Acc36I	ACCTGC	1 cut(s)	377
AccB1I	GGYRCC	1 cut(s)	100
AccI	GTMKAC	1 cut(s)	215
AccII	CGCG	1 cut(s)	80
AccIII	TCCGGA	1 cut(s)	790
AcoI	YGGCCR	2 cut(s)	32, 147
AcsI	RAATTY	3 cut(s)	820, 937, 1230
AfaI	GTAC	4 cut(s)	363, 402, 496, 1142
AfiI	CCNNNNNNNGG	2 cut(s)	122, 1452
AflII	CTTAAG	1 cut(s)	764
AflIII	ACRYGT	1 cut(s)	12
AgsI	TTSAA	8 cut(s)	583, 670, 787, 868, 994, 1058, 1252, 1493
AjnI	CCWGG	1 cut(s)	968
AjuI	GAANNNNNNNTTGG	4 cut(s)	153, 185, 1316, 1348
Alw26I	GTCTC	3 cut(s)	174, 850, 1526
Ama87I	CYCGRG	1 cut(s)	1210
Aor13HI	TCCGGA	1 cut(s)	790
AoxI	GGCC	3 cut(s)	32, 147, 262
ApeKI	GCWGC	3 cut(s)	120, 225, 488
ApoI	RAATTY	3 cut(s)	820, 937, 1230
ArsI	GACNNNNNNTTYG	2 cut(s)	466, 498
Asp700I	GAANNNNTTC	1 cut(s)	452
AspLEI	GCGC	1 cut(s)	230
AsuC2I	CCSGG	2 cut(s)	31, 902
AsuHPI	GGTGA	6 cut(s)	44, 121, 401, 578, 811, 956
AsuII	TTCGAA	1 cut(s)	456
AvaI	CYCGRG	1 cut(s)	1210
BanI	GGYRCC	1 cut(s)	100
BbsI	GAAGAC	1 cut(s)	978
BbvCI	CCTCAGC	1 cut(s)	543
BbvI	GCAGC	3 cut(s)	132, 237, 475
BccI	CCATC	3 cut(s)	349, 868, 947
BceAI	ACGGC	3 cut(s)	108, 114, 215
BciT130I	CCWGG	1 cut(s)	970
BcnI	CCSGG	2 cut(s)	31, 902
BcoDI	GTCTC	3 cut(s)	174, 850, 1526
BfaI	CTAG	4 cut(s)	41, 188, 1113, 1166
BfoI	RGCGCY	1 cut(s)	231
BfrI	CTTAAG	1 cut(s)	764
BfuAI	ACCTGC	1 cut(s)	377
BisI	GCNGC	7 cut(s)	69, 72, 75, 78, 121, 226, 489
BlsI	GCNGC	7 cut(s)	70, 73, 76, 79, 122, 227, 490
Bme1390I	CCNGG	3 cut(s)	31, 902, 970
BmeT110I	CYCGRG	1 cut(s)	1210
BmiI	GGNNCC	1 cut(s)	102
BmrFI	CCNGG	3 cut(s)	31, 902, 970
BmsI	GCATC	2 cut(s)	997, 1099
BpiI	GAAGAC	1 cut(s)	978
Bpu10I	CCTNAGC	1 cut(s)	543
Bpu14I	TTCGAA	1 cut(s)	456
BpuEI	CTTGAG	2 cut(s)	359, 1379
BpuMI	CCSGG	2 cut(s)	31, 902
Bsa29I	ATCGAT	1 cut(s)	614
BsaJI	CCNNGG	2 cut(s)	105, 427
BsaWI	WCCGGW	1 cut(s)	790
Bsc4I	CCNNNNNNNGG	2 cut(s)	122, 1452
Bse1I	ACTGG	1 cut(s)	1557
BseAI	TCCGGA	1 cut(s)	790
BseBI	CCWGG	1 cut(s)	970
BseCI	ATCGAT	1 cut(s)	614
BseDI	CCNNGG	2 cut(s)	105, 427
BseGI	GGATG	1 cut(s)	360
BseLI	CCNNNNNNNGG	2 cut(s)	122, 1452
BseMII	CTCAG	5 cut(s)	435, 534, 1033, 1128, 1445
BseNI	ACTGG	1 cut(s)	1557
BseRI	GAGGAG	2 cut(s)	141, 153
BseXI	GCAGC	3 cut(s)	132, 237, 475
BsgI	GTGCAG	1 cut(s)	539
Bsh1236I	CGCG	1 cut(s)	80
BshFI	GGCC	3 cut(s)	34, 149, 264
BshNI	GGYRCC	1 cut(s)	100
BshVI	ATCGAT	1 cut(s)	614
BsiHKCI	CYCGRG	1 cut(s)	1210
BsiSI	CCGG	3 cut(s)	31, 791, 901
BslFI	GGGAC	1 cut(s)	632
BslI	CCNNNNNNNGG	2 cut(s)	122, 1452
BsmAI	GTCTC	3 cut(s)	174, 850, 1526
BsmFI	GGGAC	1 cut(s)	632
BsnI	GGCC	3 cut(s)	34, 149, 264
BsoBI	CYCGRG	1 cut(s)	1210
Bsp119I	TTCGAA	1 cut(s)	456
Bsp13I	TCCGGA	1 cut(s)	790
Bsp1407I	TGTACA	3 cut(s)	361, 400, 494
Bsp143I	GATC	2 cut(s)	315, 469
BspANI	GGCC	3 cut(s)	34, 149, 264
BspCNI	CTCAG	5 cut(s)	436, 535, 1032, 1129, 1444
BspDI	ATCGAT	1 cut(s)	614
BspEI	TCCGGA	1 cut(s)	790
BspFNI	CGCG	1 cut(s)	80
BspLI	GGNNCC	1 cut(s)	102
BspMI	ACCTGC	1 cut(s)	377
BspQI	GCTCTTC	1 cut(s)	1488
BspT104I	TTCGAA	1 cut(s)	456
BspT107I	GGYRCC	1 cut(s)	100
BspTI	CTTAAG	1 cut(s)	764
BsrGI	TGTACA	3 cut(s)	361, 400, 494
BsrI	ACTGG	1 cut(s)	1557
BssECI	CCNNGG	2 cut(s)	105, 427
BssMI	GATC	2 cut(s)	315, 469
BssNAI	GTATAC	1 cut(s)	216
Bst1107I	GTATAC	1 cut(s)	216
Bst2UI	CCWGG	1 cut(s)	970
Bst4CI	ACNGT	5 cut(s)	85, 166, 440, 636, 1321
Bst6I	CTCTTC	4 cut(s)	172, 771, 1488, 1524
BstAFI	CTTAAG	1 cut(s)	764
BstAUI	TGTACA	3 cut(s)	361, 400, 494
BstBI	TTCGAA	1 cut(s)	456
BstC8I	GCNNGC	2 cut(s)	933, 1348
BstDSI	CCRYGG	2 cut(s)	105, 427
BstF5I	GGATG	1 cut(s)	360
BstFNI	CGCG	1 cut(s)	80
BstH2I	RGCGCY	1 cut(s)	231
BstHHI	GCGC	1 cut(s)	230
BstKTI	GATC	2 cut(s)	318, 472
BstMAI	GTCTC	3 cut(s)	174, 850, 1526
BstMBI	GATC	2 cut(s)	315, 469
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 77, 860
BstNI	CCWGG	1 cut(s)	970
BstNSI	RCATGY	2 cut(s)	16, 935
BstSCI	CCNGG	3 cut(s)	29, 900, 968
BstUI	CGCG	1 cut(s)	80
BstV1I	GCAGC	3 cut(s)	132, 237, 475
BstV2I	GAAGAC	1 cut(s)	978
BstXI	CCANNNNNNTGG	1 cut(s)	1415
BstZ17I	GTATAC	1 cut(s)	216
Bsu15I	ATCGAT	1 cut(s)	614
BsuRI	GGCC	3 cut(s)	34, 149, 264
BsuTUI	ATCGAT	1 cut(s)	614
BtgI	CCRYGG	2 cut(s)	105, 427
BtsCI	GGATG	1 cut(s)	360
BtsIMutI	CAGTG	1 cut(s)	445
BveI	ACCTGC	1 cut(s)	377
Cac8I	GCNNGC	2 cut(s)	933, 1348
CfoI	GCGC	1 cut(s)	230
ClaI	ATCGAT	1 cut(s)	614
Csp6I	GTAC	4 cut(s)	362, 401, 495, 1141
CviAII	CATG	7 cut(s)	13, 485, 932, 1144, 1224, 1239, 1264
CviQI	GTAC	4 cut(s)	362, 401, 495, 1141
DpnI	GATC	2 cut(s)	317, 471
DpnII	GATC	2 cut(s)	315, 469
DraI	TTTAAA	1 cut(s)	435
DrdI	GACNNNNNNGTC	1 cut(s)	1557
DseDI	GACNNNNNNGTC	1 cut(s)	1557
EaeI	YGGCCR	2 cut(s)	32, 147
Eam1104I	CTCTTC	4 cut(s)	172, 771, 1488, 1524
EarI	CTCTTC	4 cut(s)	172, 771, 1488, 1524
EciI	GGCGGA	1 cut(s)	55
Eco32I	GATATC	2 cut(s)	417, 1029
Eco88I	CYCGRG	1 cut(s)	1210
EcoRII	CCWGG	1 cut(s)	968
EcoRV	GATATC	2 cut(s)	417, 1029
FaeI	CATG	7 cut(s)	16, 488, 935, 1147, 1227, 1242, 1267
FalI	AAGNNNNNCTT	2 cut(s)	747, 779
FaqI	GGGAC	1 cut(s)	632
FatI	CATG	7 cut(s)	12, 484, 931, 1143, 1223, 1238, 1263
FauNDI	CATATG	1 cut(s)	606
FblI	GTMKAC	1 cut(s)	215
Fnu4HI	GCNGC	7 cut(s)	69, 72, 75, 78, 121, 226, 489
FokI	GGATG	1 cut(s)	367
Fsp4HI	GCNGC	7 cut(s)	69, 72, 75, 78, 121, 226, 489
FspBI	CTAG	4 cut(s)	41, 188, 1113, 1166
GlaI	GCGC	1 cut(s)	229
GluI	GCNGC	7 cut(s)	69, 72, 75, 78, 121, 226, 489
HaeII	RGCGCY	1 cut(s)	231
HaeIII	GGCC	3 cut(s)	34, 149, 264
HapII	CCGG	3 cut(s)	31, 791, 901
HhaI	GCGC	1 cut(s)	230
Hin1II	CATG	7 cut(s)	16, 488, 935, 1147, 1227, 1242, 1267
Hin6I	GCGC	1 cut(s)	228
HinP1I	GCGC	1 cut(s)	228
HincII	GTYRAC	1 cut(s)	816
HindII	GTYRAC	1 cut(s)	816
HindIII	AAGCTT	1 cut(s)	1043
HinfI	GANTC	7 cut(s)	143, 787, 1088, 1116, 1123, 1301, 1399
HpaI	GTTAAC	1 cut(s)	816
HpaII	CCGG	3 cut(s)	31, 791, 901
HphI	GGTGA	6 cut(s)	44, 121, 401, 578, 811, 956
Hpy166II	GTNNAC	7 cut(s)	88, 216, 495, 816, 961, 1426, 1587
Hpy188I	TCNGA	1 cut(s)	535
Hpy188III	TCNNGA	9 cut(s)	338, 580, 627, 686, 729, 791, 994, 1098, 1120
Hpy8I	GTNNAC	7 cut(s)	88, 216, 495, 816, 961, 1426, 1587
Hpy99I	CGWCG	1 cut(s)	100
HpyAV	CCTTC	4 cut(s)	254, 766, 862, 970
HpyCH4III	ACNGT	5 cut(s)	85, 166, 440, 636, 1321
HpyCH4V	TGCA	3 cut(s)	520, 931, 1350
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 77, 860
Hsp92II	CATG	7 cut(s)	16, 488, 935, 1147, 1227, 1242, 1267
HspAI	GCGC	1 cut(s)	228
Kpn2I	TCCGGA	1 cut(s)	790
KspAI	GTTAAC	1 cut(s)	816
Kzo9I	GATC	2 cut(s)	315, 469
LguI	GCTCTTC	1 cut(s)	1488
LmnI	GCTCC	4 cut(s)	1343, 1382, 1410, 1540
Lsp1109I	GCAGC	3 cut(s)	132, 237, 475
LweI	GCATC	2 cut(s)	997, 1099
MaeI	CTAG	4 cut(s)	41, 188, 1113, 1166
MaeIII	GTNAC	6 cut(s)	235, 694, 799, 944, 1449, 1570
MalI	GATC	2 cut(s)	317, 471
MboI	GATC	2 cut(s)	315, 469
MluCI	AATT	4 cut(s)	820, 937, 1230, 1441
MlyI	GAGTC	1 cut(s)	1393
MmeI	TCCRAC	1 cut(s)	151
MroI	TCCGGA	1 cut(s)	790
MroXI	GAANNNNTTC	1 cut(s)	452
MseI	TTAA	9 cut(s)	288, 434, 660, 765, 815, 965, 981, 1338, 1377
MslI	CAYNNNNRTG	1 cut(s)	513
MspA1I	CMGCKG	1 cut(s)	123
MspCI	CTTAAG	1 cut(s)	764
MspI	CCGG	3 cut(s)	31, 791, 901
MspR9I	CCNGG	3 cut(s)	31, 902, 970
MssI	GTTTAAAC	1 cut(s)	435
MvaI	CCWGG	1 cut(s)	970
MvnI	CGCG	1 cut(s)	80
MwoI	GCNNNNNNNGC	3 cut(s)	74, 77, 860
NciI	CCSGG	2 cut(s)	31, 902
NdeI	CATATG	1 cut(s)	606
NdeII	GATC	2 cut(s)	315, 469
NlaIII	CATG	7 cut(s)	16, 488, 935, 1147, 1227, 1242, 1267
NlaIV	GGNNCC	1 cut(s)	102
NmuCI	GTSAC	3 cut(s)	799, 944, 1570
NspI	RCATGY	2 cut(s)	16, 935
NspV	TTCGAA	1 cut(s)	456
PaeI	GCATGC	1 cut(s)	935
PaqCI	CACCTGC	1 cut(s)	377
PciI	ACATGT	1 cut(s)	12
PciSI	GCTCTTC	1 cut(s)	1488
PdmI	GAANNNNTTC	1 cut(s)	452
PfeI	GAWTC	6 cut(s)	143, 787, 1088, 1116, 1123, 1301
PkrI	GCNGC	7 cut(s)	70, 73, 76, 79, 122, 227, 490
PleI	GAGTC	1 cut(s)	1393
PmeI	GTTTAAAC	1 cut(s)	435
PpsI	GAGTC	1 cut(s)	1393
PscI	ACATGT	1 cut(s)	12
PsiI	TTATAA	2 cut(s)	702, 1547
Psp6I	CCWGG	1 cut(s)	968
PspGI	CCWGG	1 cut(s)	968
PspN4I	GGNNCC	1 cut(s)	102
RsaI	GTAC	4 cut(s)	363, 402, 496, 1142
RsaNI	GTAC	4 cut(s)	362, 401, 495, 1141
RseI	CAYNNNNRTG	1 cut(s)	513
SapI	GCTCTTC	1 cut(s)	1488
SaqAI	TTAA	9 cut(s)	288, 434, 660, 765, 815, 965, 981, 1338, 1377
SatI	GCNGC	7 cut(s)	69, 72, 75, 78, 121, 226, 489
Sau3AI	GATC	2 cut(s)	315, 469
SchI	GAGTC	1 cut(s)	1393
ScrFI	CCNGG	3 cut(s)	31, 902, 970
SfaNI	GCATC	2 cut(s)	997, 1099
SfuI	TTCGAA	1 cut(s)	456
SmiMI	CAYNNNNRTG	1 cut(s)	513
SmlI	CTYRAG	3 cut(s)	338, 764, 1358
SmoI	CTYRAG	3 cut(s)	338, 764, 1358
SphI	GCATGC	1 cut(s)	935
Sse9I	AATT	4 cut(s)	820, 937, 1230, 1441
SspMI	CTAG	4 cut(s)	41, 188, 1113, 1166
StyD4I	CCNGG	3 cut(s)	29, 900, 968
TaaI	ACNGT	5 cut(s)	85, 166, 440, 636, 1321
TaqI	TCGA	5 cut(s)	456, 614, 626, 741, 846
TasI	AATT	4 cut(s)	820, 937, 1230, 1441
TatI	WGTACW	4 cut(s)	361, 400, 494, 1140
TauI	GCSGC	4 cut(s)	71, 74, 77, 80
TfiI	GAWTC	6 cut(s)	143, 787, 1088, 1116, 1123, 1301
Tru1I	TTAA	9 cut(s)	288, 434, 660, 765, 815, 965, 981, 1338, 1377
Tru9I	TTAA	9 cut(s)	288, 434, 660, 765, 815, 965, 981, 1338, 1377
TscAI	CASTG	1 cut(s)	445
TseFI	GTSAC	3 cut(s)	799, 944, 1570
TseI	GCWGC	3 cut(s)	120, 225, 488
Tsp45I	GTSAC	3 cut(s)	799, 944, 1570
TspDTI	ATGAA	4 cut(s)	17, 1016, 1160, 1542
TspGWI	ACGGA	5 cut(s)	233, 259, 416, 1201, 1468
TspRI	CASTG	1 cut(s)	445
Vha464I	CTTAAG	1 cut(s)	764
XapI	RAATTY	3 cut(s)	820, 937, 1230
XceI	RCATGY	2 cut(s)	16, 935
XmiI	GTMKAC	1 cut(s)	215
XmnI	GAANNNNTTC	1 cut(s)	452
XspI	CTAG	4 cut(s)	41, 188, 1113, 1166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.