Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033743.1

Orthogroup ID

OG0013302

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 380

Gene Structure 380 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033743.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 380 bp

ccacgccacgtggaaagaaacccgaacccggcccattggtaacaaaagcccaaattagctggactacttcagggggagaggggcactggggtttgaataatgacatgttgctaagaaacctgcgaagctccatcgccgccgtccgccgtttatcggcggtggcgagcaccggagcgacgaaggaatcgggcggtggaagagacacgctgggaaggagacttctgggcctggtgtatgcaaaacgcagcgcggcggttactatagggaaatggaaagaggaaggaggcacagtgcggaagtatgagcttaatcgaattgttcgggagcttcgtaagctccggcgttataagcacgctcttgaggtcggttgctctcagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

125

Amino Acids

13.71

Weight (kDa)

10.97

Isoelectric Point (pI)

41.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02820
fragaria_vesca	FvH4_2g23640
malus_domestica	MD03G1265900.v1.1
prunus_persica	Prupe.8G241600_v2.0.a1 Prupe.8G241600_v2.0.a1 Prupe.8G241600_v2.0.a1
pyrus_communis	pycom03g21240
rosa_chinensis	RchiOBHm_Chr6g0291111
rosa_laevigata	RLG00000012143
rosa_multiflora	Rmu_sc0004642.1_g000017 Rmu_sc0033743.1_g000001
rosa_roxburghii	Rroxscaffold_7G00176370
rosa_rugosa	Rorug06G0217700
rosa_samantha	Rh6AG327900 Rh6BG335400 Rh6CG341600 Rh6DG328800
rosa_wichuraiana	Rw6G028520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	347
Acc36I	ACCTGC	1 cut(s)	128
AccII	CGCG	1 cut(s)	250
AciI	CCGC	7 cut(s)	137, 144, 157, 191, 250, 253, 294
AcuI	CTGAAG	1 cut(s)	53
AcvI	CACGTG	1 cut(s)	10
AfiI	CCNNNNNNNGG	2 cut(s)	28, 153
AflIII	ACRYGT	1 cut(s)	104
AgsI	TTSAA	1 cut(s)	96
AjnI	CCWGG	1 cut(s)	227
AluBI	AGCT	5 cut(s)	59, 128, 306, 327, 336
AluI	AGCT	5 cut(s)	59, 128, 306, 327, 336
Alw21I	GWGCWC	1 cut(s)	169
Alw26I	GTCTC	2 cut(s)	194, 210
AoxI	GGCC	2 cut(s)	30, 225
ApeKI	GCWGC	1 cut(s)	245
AspLEI	GCGC	1 cut(s)	250
AspS9I	GGNCC	2 cut(s)	31, 225
AsuC2I	CCSGG	1 cut(s)	29
BaeGI	GKGCMC	1 cut(s)	86
BbrPI	CACGTG	1 cut(s)	10
Bbv12I	GWGCWC	1 cut(s)	169
BbvI	GCAGC	1 cut(s)	257
BccI	CCATC	1 cut(s)	139
BceAI	ACGGC	2 cut(s)	124, 131
BciT130I	CCWGG	1 cut(s)	229
BcnI	CCSGG	1 cut(s)	29
BcoDI	GTCTC	2 cut(s)	194, 210
BfmI	CTRYAG	1 cut(s)	260
BfuAI	ACCTGC	1 cut(s)	128
BisI	GCNGC	3 cut(s)	137, 246, 251
BlsI	GCNGC	3 cut(s)	138, 247, 252
Bme1390I	CCNGG	2 cut(s)	29, 229
BmgT120I	GGNCC	2 cut(s)	31, 225
BmrFI	CCNGG	2 cut(s)	29, 229
BmrI	ACTGGG	1 cut(s)	96
BmuI	ACTGGG	1 cut(s)	96
BpuEI	CTTGAG	1 cut(s)	379
BpuMI	CCSGG	1 cut(s)	29
BsaAI	YACGTR	1 cut(s)	10
BsaWI	WCCGGW	1 cut(s)	169
BsaXI	ACNNNNNCTCC	2 cut(s)	275, 305
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 153
Bse1I	ACTGG	1 cut(s)	91
BseBI	CCWGG	1 cut(s)	229
BseLI	CCNNNNNNNGG	2 cut(s)	28, 153
BseNI	ACTGG	1 cut(s)	91
BseSI	GKGCMC	1 cut(s)	86
BseXI	GCAGC	1 cut(s)	257
BseYI	CCCAGC	1 cut(s)	207
Bsh1236I	CGCG	1 cut(s)	250
BshFI	GGCC	2 cut(s)	32, 227
BsiHKAI	GWGCWC	1 cut(s)	169
BsiSI	CCGG	3 cut(s)	29, 170, 339
BslI	CCNNNNNNNGG	2 cut(s)	28, 153
BsmAI	GTCTC	2 cut(s)	194, 210
BsnI	GGCC	2 cut(s)	32, 227
Bsp1286I	GDGCHC	2 cut(s)	86, 169
BspACI	CCGC	7 cut(s)	137, 144, 157, 191, 250, 253, 294
BspANI	GGCC	2 cut(s)	32, 227
BspFNI	CGCG	1 cut(s)	250
BspMI	ACCTGC	1 cut(s)	128
BsrI	ACTGG	1 cut(s)	91
Bst2UI	CCWGG	1 cut(s)	229
Bst4CI	ACNGT	1 cut(s)	291
Bst6I	CTCTTC	1 cut(s)	192
BstBAI	YACGTR	1 cut(s)	10
BstC8I	GCNNGC	2 cut(s)	165, 353
BstDEI	CTNAG	2 cut(s)	112, 374
BstFNI	CGCG	1 cut(s)	250
BstHHI	GCGC	1 cut(s)	250
BstMAI	GTCTC	2 cut(s)	194, 210
BstMWI	GCNNNNNNNGC	2 cut(s)	333, 348
BstNI	CCWGG	1 cut(s)	229
BstNSI	RCATGY	1 cut(s)	108
BstSCI	CCNGG	2 cut(s)	27, 227
BstSFI	CTRYAG	1 cut(s)	260
BstSLI	GKGCMC	1 cut(s)	86
BstUI	CGCG	1 cut(s)	250
BstV1I	GCAGC	1 cut(s)	257
BsuRI	GGCC	2 cut(s)	32, 227
BtgZI	GCGATG	1 cut(s)	117
BtsIMutI	CAGTG	2 cut(s)	84, 296
BveI	ACCTGC	1 cut(s)	128
Cac8I	GCNNGC	2 cut(s)	165, 353
CfoI	GCGC	1 cut(s)	250
Cfr13I	GGNCC	2 cut(s)	31, 225
CviAII	CATG	1 cut(s)	105
CviJI	RGCY	8 cut(s)	32, 49, 59, 128, 227, 306, 327, 336
CviKI_1	RGCY	8 cut(s)	32, 49, 59, 128, 227, 306, 327, 336
DdeI	CTNAG	2 cut(s)	112, 374
Eam1104I	CTCTTC	1 cut(s)	192
EarI	CTCTTC	1 cut(s)	192
EciI	GGCGGA	1 cut(s)	133
Eco57I	CTGAAG	1 cut(s)	53
Eco72I	CACGTG	1 cut(s)	10
EcoRII	CCWGG	1 cut(s)	227
FaeI	CATG	1 cut(s)	108
FaiI	YATR	5 cut(s)	106, 236, 262, 302, 347
FatI	CATG	1 cut(s)	104
Fnu4HI	GCNGC	3 cut(s)	137, 246, 251
Fsp4HI	GCNGC	3 cut(s)	137, 246, 251
GlaI	GCGC	1 cut(s)	249
GluI	GCNGC	3 cut(s)	137, 246, 251
GsaI	CCCAGC	1 cut(s)	211
HaeIII	GGCC	2 cut(s)	32, 227
HapII	CCGG	3 cut(s)	29, 170, 339
HhaI	GCGC	1 cut(s)	250
Hin1II	CATG	1 cut(s)	108
Hin6I	GCGC	1 cut(s)	248
HinP1I	GCGC	1 cut(s)	248
HinfI	GANTC	1 cut(s)	184
HpaII	CCGG	3 cut(s)	29, 170, 339
Hpy188III	TCNNGA	2 cut(s)	322, 358
Hpy99I	CGWCG	1 cut(s)	180
HpyAV	CCTTC	3 cut(s)	174, 206, 274
HpyCH4III	ACNGT	1 cut(s)	291
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	1 cut(s)	238
HpyF10VI	GCNNNNNNNGC	2 cut(s)	333, 348
HpyF3I	CTNAG	2 cut(s)	112, 374
HpySE526I	ACGT	1 cut(s)	9
Hsp92II	CATG	1 cut(s)	108
HspAI	GCGC	1 cut(s)	248
LmnI	GCTCC	4 cut(s)	133, 172, 324, 341
Lsp1109I	GCAGC	1 cut(s)	257
MaeII	ACGT	1 cut(s)	9
MaeIII	GTNAC	2 cut(s)	39, 255
MboII	GAAGA	1 cut(s)	209
MhlI	GDGCHC	2 cut(s)	86, 169
MluCI	AATT	2 cut(s)	53, 314
MnlI	CCTC	4 cut(s)	72, 270, 277, 354
MseI	TTAA	1 cut(s)	308
MspI	CCGG	3 cut(s)	29, 170, 339
MspR9I	CCNGG	2 cut(s)	29, 229
MvaI	CCWGG	1 cut(s)	229
MvnI	CGCG	1 cut(s)	250
MwoI	GCNNNNNNNGC	2 cut(s)	333, 348
NciI	CCSGG	1 cut(s)	29
NlaIII	CATG	1 cut(s)	108
NspI	RCATGY	1 cut(s)	108
PciI	ACATGT	1 cut(s)	104
PcsI	WCGNNNNNNNCGW	2 cut(s)	160, 327
PfeI	GAWTC	1 cut(s)	184
PkrI	GCNGC	3 cut(s)	138, 247, 252
PmaCI	CACGTG	1 cut(s)	10
PmlI	CACGTG	1 cut(s)	10
Ppu21I	YACGTR	1 cut(s)	10
PscI	ACATGT	1 cut(s)	104
PsiI	TTATAA	1 cut(s)	347
Psp6I	CCWGG	1 cut(s)	227
PspCI	CACGTG	1 cut(s)	10
PspFI	CCCAGC	1 cut(s)	207
PspGI	CCWGG	1 cut(s)	227
PspPI	GGNCC	2 cut(s)	31, 225
SaqAI	TTAA	1 cut(s)	308
SatI	GCNGC	3 cut(s)	137, 246, 251
Sau96I	GGNCC	2 cut(s)	31, 225
ScrFI	CCNGG	2 cut(s)	29, 229
SduI	GDGCHC	2 cut(s)	86, 169
SetI	ASST	8 cut(s)	12, 61, 122, 130, 308, 329, 338, 365
SfcI	CTRYAG	1 cut(s)	260
SmlI	CTYRAG	1 cut(s)	358
SmoI	CTYRAG	1 cut(s)	358
Sse9I	AATT	2 cut(s)	53, 314
SsiI	CCGC	7 cut(s)	137, 144, 157, 191, 250, 253, 294
StyD4I	CCNGG	2 cut(s)	27, 227
TaaI	ACNGT	1 cut(s)	291
TaiI	ACGT	1 cut(s)	12
TaqI	TCGA	1 cut(s)	312
TasI	AATT	2 cut(s)	53, 314
TauI	GCSGC	2 cut(s)	139, 253
TfiI	GAWTC	1 cut(s)	184
Tru1I	TTAA	1 cut(s)	308
Tru9I	TTAA	1 cut(s)	308
TscAI	CASTG	2 cut(s)	91, 296
TseI	GCWGC	1 cut(s)	245
TspRI	CASTG	2 cut(s)	91, 296
XceI	RCATGY	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.