Rmu_sc0004642.1_g000017

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004642.1
Physical Location & Seq
Forward (+)
73535 .. 75606
2072 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004642.1_g000017.1.cds

Sequence Viewer

Length: 1635 bp
atggaagcctgcgaatcagattttgacgacggcgattgtgctgccgtttttagtcttttgcgtggggagaaagctgcgtttacagtagggggagaggagcactggggtttgaataatgacatgttgctaagaaacctgcgaagctccatcgccgccgtccgccgtttctcggcggtggcgagcaccggagcgacgaaggaatcgggcggtggaagagacacgctgggaaggagacttctgggcctggtgtatgcaaaacgcagcgcggcggttactatagggaaatggaaagaggaaggaggcacagtgcggaagtatgagcttaatcgaattgttcgggagcttcgtaagctccggcgttataagcatgctcttgagatatgcgaatggatgactttgcagaaagatatcaagctactggcaggtgattatgctgttcagttggatttgattgcaaaggttcgtggtatgaatagcgcagagaagtttttcgaggatctccctgagcagatgagagacggcacgacctgttcagctcttctgcatacatatgtccagaataaagaggctgccaaagcggaagctctggtggagaagatgaaagagtgtggtttcgtgaagaatccccttccttacaaccacatgctgtctttgtatgtgtccgatgggcaattagacaagattccagaagtaattggggagatgaagattcatactaaaccggatgttgtcacttacaatctatggttaacagtttgtgcttcgcaaaataatgttgatagtgcagaaagagtgtttcttgaattgaagaaggcaaaggtaaatccggactgggtgacatttagcacgctaacgaacttgtacatcaaaagttcactcattgaaaaagcagcagctaccttgaaggagatggagaatatggcatctcggaagcatcgagtcgcatattcatctctcctcagcctgcatgcaaacattggggacaaggctggtgttcagcgagtttggaagaaactaaaatcatgtttccccaaaatgaatgatgctgagtatacatgtatgatagcttcgcttgtgaaactcaaggagattgaagaagctgagaaactctatactgagtgggagtctgtttctgggactcatgatcctagggtctcaaatataattcttgcagcttacatcaacagaaaccaaatggatgtggctgaaaccttctgtagtcgtatggtgcaaaatagcatcaccccctgttacagtacttgggagcttcttacgtggggctatttgaaacaaaagcatacgaaaaaagtgctggagtattttaagaaagcagttggtagtgtgaaaaaatgggatcccgaccaaagattgattgcagaagtatttggcaggctcaatgaggaaggcagtgttgaagaggcagaggaactagtggttttccttcggaatgctggtcatgtgagtactgagacatataattcacttctacgaacttatgctcaagctggtacaatgccacttttggttgaagaacggatgaagaaggacaatgttgaattgaataaggagactcgctcgcttataaaaaggatcagcaaaatttgtgcgagtgaagttcctagcctatgttcttaa

Protein Analysis

544

Amino Acids

61.49

Weight (kDa)

8.61

Isoelectric Point (pI)

35.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013302)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 363, 1583
AarI CACCTGC 1 cut(s) 413
Acc36I ACCTGC 2 cut(s) 144, 413
AccI GTMKAC 1 cut(s) 1052
AccII CGCG 1 cut(s) 266
AccIII TCCGGA 1 cut(s) 826
AciI CCGC 8 cut(s) 153, 160, 173, 207, 266, 269, 310, 578
AclWI GGATC 5 cut(s) 504, 1139, 1349, 1362, 1598
AcsI RAATTY 1 cut(s) 1599
AfaI GTAC 4 cut(s) 863, 1258, 1465, 1510
AfiI CCNNNNNNNGG 1 cut(s) 169
AflIII ACRYGT 2 cut(s) 120, 1055
AhlI ACTAGT 1 cut(s) 1429
AjnI CCWGG 1 cut(s) 243
Alw21I GWGCWC 2 cut(s) 102, 185
Alw26I GTCTC 6 cut(s) 210, 226, 510, 1159, 1463, 1562
AlwI GGATC 5 cut(s) 504, 1139, 1349, 1362, 1598
Aor13HI TCCGGA 1 cut(s) 826
AoxI GGCC 1 cut(s) 241
ApeKI GCWGC 7 cut(s) 41, 74, 261, 569, 890, 893, 1172
ApoI RAATTY 1 cut(s) 1599
Asp700I GAANNNNTTC 1 cut(s) 488
AspA2I CCTAGG 1 cut(s) 1148
AspLEI GCGC 2 cut(s) 266, 479
AspS9I GGNCC 1 cut(s) 241
AsuHPI GGTGA 3 cut(s) 437, 847, 1234
AvrII CCTAGG 1 cut(s) 1148
BamHI GGATCC 1 cut(s) 1354
BarI GAAGNNNNNNTAC 2 cut(s) 1051, 1083
Bbv12I GWGCWC 2 cut(s) 102, 185
BbvCI CCTCAGC 1 cut(s) 959
BbvI GCAGC 7 cut(s) 28, 61, 273, 556, 902, 905, 1184
BccI CCATC 3 cut(s) 155, 659, 904
BceAI ACGGC 5 cut(s) 29, 46, 140, 147, 535
BcgI CGANNNNNNTGC 4 cut(s) 23, 57, 1291, 1325
BciT130I CCWGG 1 cut(s) 245
BcoDI GTCTC 6 cut(s) 210, 226, 510, 1159, 1463, 1562
BcuI ACTAGT 1 cut(s) 1429
BfaI CTAG 3 cut(s) 1149, 1430, 1620
BfmI CTRYAG 2 cut(s) 276, 1216
BfuAI ACCTGC 2 cut(s) 144, 413
BisI GCNGC 9 cut(s) 42, 75, 153, 262, 267, 570, 891, 894, 1173
BlnI CCTAGG 1 cut(s) 1148
BlsI GCNGC 9 cut(s) 43, 76, 154, 263, 268, 571, 892, 895, 1174
BmcAI AGTACT 2 cut(s) 1258, 1465
Bme1390I CCNGG 1 cut(s) 245
BmgT120I GGNCC 1 cut(s) 241
BmiI GGNNCC 1 cut(s) 1356
BmrFI CCNGG 1 cut(s) 245
BmrI ACTGGG 2 cut(s) 112, 841
BmsI GCATC 4 cut(s) 932, 943, 1033, 1248
BmuI ACTGGG 2 cut(s) 112, 841
BplI GAGNNNNNCTC 2 cut(s) 1559, 1591
BpmI CTGGAG 1 cut(s) 1334
Bpu10I CCTNAGC 2 cut(s) 504, 959
BpuEI CTTGAG 3 cut(s) 395, 1067, 1485
BsaAI YACGTR 1 cut(s) 1275
BsaI GGTCTC 1 cut(s) 1159
BsaJI CCNNGG 1 cut(s) 1148
BsaWI WCCGGW 3 cut(s) 185, 721, 826
BsaXI ACNNNNNCTCC 2 cut(s) 291, 321
Bsc4I CCNNNNNNNGG 1 cut(s) 169
Bse1I ACTGG 3 cut(s) 107, 423, 836
BseAI TCCGGA 1 cut(s) 826
BseBI CCWGG 1 cut(s) 245
BseDI CCNNGG 1 cut(s) 1148
BseGI GGATG 4 cut(s) 396, 730, 1204, 1542
BseLI CCNNNNNNNGG 1 cut(s) 169
BseMII CTCAG 6 cut(s) 495, 973, 1038, 1092, 1107, 1458
BseNI ACTGG 3 cut(s) 107, 423, 836
BseRI GAGGAG 2 cut(s) 110, 947
BseXI GCAGC 7 cut(s) 28, 61, 273, 556, 902, 905, 1184
BseYI CCCAGC 1 cut(s) 223
BsgI GTGCAG 1 cut(s) 804
Bsh1236I CGCG 1 cut(s) 266
BshFI GGCC 1 cut(s) 243
BsiHKAI GWGCWC 2 cut(s) 102, 185
BsiSI CCGG 4 cut(s) 186, 355, 722, 827
BslFI GGGAC 2 cut(s) 995, 1150
BslI CCNNNNNNNGG 1 cut(s) 169
BsmAI GTCTC 6 cut(s) 210, 226, 510, 1159, 1463, 1562
BsmBI CGTCTC 1 cut(s) 510
BsmFI GGGAC 2 cut(s) 995, 1150
BsmI GAATGC 1 cut(s) 1453
BsnI GGCC 1 cut(s) 243
Bso31I GGTCTC 1 cut(s) 1159
Bsp1286I GDGCHC 2 cut(s) 102, 185
Bsp13I TCCGGA 1 cut(s) 826
Bsp1407I TGTACA 1 cut(s) 861
Bsp143I GATC 4 cut(s) 496, 1144, 1354, 1590
BspACI CCGC 8 cut(s) 153, 160, 173, 207, 266, 269, 310, 578
BspANI GGCC 1 cut(s) 243
BspCNI CTCAG 6 cut(s) 496, 972, 1039, 1093, 1108, 1459
BspEI TCCGGA 1 cut(s) 826
BspFNI CGCG 1 cut(s) 266
BspHI TCATGA 1 cut(s) 1141
BspLI GGNNCC 1 cut(s) 1356
BspMI ACCTGC 2 cut(s) 144, 413
BspPI GGATC 5 cut(s) 504, 1139, 1349, 1362, 1598
BspQI GCTCTTC 1 cut(s) 543
BspTNI GGTCTC 1 cut(s) 1159
BsrGI TGTACA 1 cut(s) 861
BsrI ACTGG 3 cut(s) 107, 423, 836
BssECI CCNNGG 1 cut(s) 1148
BssMI GATC 4 cut(s) 496, 1144, 1354, 1590
BssNAI GTATAC 1 cut(s) 1053
BssT1I CCWWGG 1 cut(s) 1148
Bst1107I GTATAC 1 cut(s) 1053
Bst2UI CCWGG 1 cut(s) 245
Bst4CI ACNGT 4 cut(s) 85, 307, 754, 1256
Bst6I CTCTTC 3 cut(s) 208, 543, 1410
BstAUI TGTACA 1 cut(s) 861
BstBAI YACGTR 1 cut(s) 1275
BstC8I GCNNGC 8 cut(s) 10, 181, 369, 848, 965, 969, 1391, 1577
BstDEI CTNAG 7 cut(s) 128, 504, 959, 1047, 1101, 1116, 1467
BstF5I GGATG 4 cut(s) 396, 730, 1204, 1542
BstFNI CGCG 1 cut(s) 266
BstHHI GCGC 2 cut(s) 266, 479
BstKTI GATC 4 cut(s) 499, 1147, 1357, 1593
BstMAI GTCTC 6 cut(s) 210, 226, 510, 1159, 1463, 1562
BstMBI GATC 4 cut(s) 496, 1144, 1354, 1590
BstMWI GCNNNNNNNGC 3 cut(s) 349, 364, 575
BstNI CCWGG 1 cut(s) 245
BstNSI RCATGY 5 cut(s) 124, 371, 646, 971, 1059
BstSCI CCNGG 1 cut(s) 243
BstSFI CTRYAG 2 cut(s) 276, 1216
BstUI CGCG 1 cut(s) 266
BstV1I GCAGC 7 cut(s) 28, 61, 273, 556, 902, 905, 1184
BstX2I RGATCY 2 cut(s) 496, 1354
BstYI RGATCY 2 cut(s) 496, 1354
BstZ17I GTATAC 1 cut(s) 1053
BsuRI GGCC 1 cut(s) 243
BtgZI GCGATG 1 cut(s) 133
BtsCI GGATG 4 cut(s) 396, 730, 1204, 1542
BtsI GCAGTG 1 cut(s) 1414
BtsIMutI CAGTG 3 cut(s) 100, 312, 1414
BveI ACCTGC 2 cut(s) 144, 413
Cac8I GCNNGC 8 cut(s) 10, 181, 369, 848, 965, 969, 1391, 1577
CciI TCATGA 1 cut(s) 1141
CfoI GCGC 2 cut(s) 266, 479
Cfr13I GGNCC 1 cut(s) 241
Csp6I GTAC 4 cut(s) 862, 1257, 1464, 1509
CviAII CATG 8 cut(s) 121, 368, 643, 968, 1023, 1056, 1142, 1457
CviQI GTAC 4 cut(s) 862, 1257, 1464, 1509
DdeI CTNAG 7 cut(s) 128, 504, 959, 1047, 1101, 1116, 1467
DpnI GATC 4 cut(s) 498, 1146, 1356, 1592
DpnII GATC 4 cut(s) 496, 1144, 1354, 1590
Eam1104I CTCTTC 3 cut(s) 208, 543, 1410
EarI CTCTTC 3 cut(s) 208, 543, 1410
EciI GGCGGA 1 cut(s) 149
Eco130I CCWWGG 1 cut(s) 1148
Eco31I GGTCTC 1 cut(s) 1159
Eco32I GATATC 1 cut(s) 409
EcoRII CCWGG 1 cut(s) 243
EcoRV GATATC 1 cut(s) 409
EcoT14I CCWWGG 1 cut(s) 1148
ErhI CCWWGG 1 cut(s) 1148
Esp3I CGTCTC 1 cut(s) 510
FaeI CATG 8 cut(s) 124, 371, 646, 971, 1026, 1059, 1145, 1460
FaqI GGGAC 2 cut(s) 995, 1150
FatI CATG 8 cut(s) 120, 367, 642, 967, 1022, 1055, 1141, 1456
FauNDI CATATG 1 cut(s) 550
FblI GTMKAC 1 cut(s) 1052
Fnu4HI GCNGC 9 cut(s) 42, 75, 153, 262, 267, 570, 891, 894, 1173
FokI GGATG 4 cut(s) 403, 737, 1211, 1549
Fsp4HI GCNGC 9 cut(s) 42, 75, 153, 262, 267, 570, 891, 894, 1173
FspBI CTAG 3 cut(s) 1149, 1430, 1620
GlaI GCGC 2 cut(s) 265, 478
GluI GCNGC 9 cut(s) 42, 75, 153, 262, 267, 570, 891, 894, 1173
GsaI CCCAGC 1 cut(s) 227
GsuI CTGGAG 1 cut(s) 1334
HaeIII GGCC 1 cut(s) 243
HapII CCGG 4 cut(s) 186, 355, 722, 827
HhaI GCGC 2 cut(s) 266, 479
Hin1II CATG 8 cut(s) 124, 371, 646, 971, 1026, 1059, 1145, 1460
Hin6I GCGC 2 cut(s) 264, 477
HinP1I GCGC 2 cut(s) 264, 477
HincII GTYRAC 1 cut(s) 750
HindII GTYRAC 1 cut(s) 750
HinfI GANTC 9 cut(s) 14, 200, 622, 682, 709, 939, 1124, 1138, 1570
HpaI GTTAAC 1 cut(s) 750
HpaII CCGG 4 cut(s) 186, 355, 722, 827
HphI GGTGA 3 cut(s) 437, 847, 1234
Hpy166II GTNNAC 4 cut(s) 81, 750, 875, 1053
Hpy188I TCNGA 4 cut(s) 19, 664, 930, 1446
Hpy188III TCNNGA 9 cut(s) 338, 374, 556, 616, 686, 800, 827, 1142, 1358
Hpy8I GTNNAC 4 cut(s) 81, 750, 875, 1053
Hpy99I CGWCG 2 cut(s) 32, 196
HpyCH4III ACNGT 4 cut(s) 85, 307, 754, 1256
HpyCH4IV ACGT 1 cut(s) 1274
HpyF10VI GCNNNNNNNGC 3 cut(s) 349, 364, 575
HpyF3I CTNAG 7 cut(s) 128, 504, 959, 1047, 1101, 1116, 1467
HpySE526I ACGT 1 cut(s) 1274
Hsp92II CATG 8 cut(s) 124, 371, 646, 971, 1026, 1059, 1145, 1460
HspAI GCGC 2 cut(s) 264, 477
Kpn2I TCCGGA 1 cut(s) 826
KspAI GTTAAC 1 cut(s) 750
Kzo9I GATC 4 cut(s) 496, 1144, 1354, 1590
LguI GCTCTTC 1 cut(s) 543
LmnI GCTCC 6 cut(s) 97, 149, 188, 340, 357, 1264
Lsp1109I GCAGC 7 cut(s) 28, 61, 273, 556, 902, 905, 1184
LweI GCATC 4 cut(s) 932, 943, 1033, 1248
MaeI CTAG 3 cut(s) 1149, 1430, 1620
MaeII ACGT 1 cut(s) 1274
MaeIII GTNAC 4 cut(s) 271, 730, 835, 1250
MalI GATC 4 cut(s) 498, 1146, 1356, 1592
MboI GATC 4 cut(s) 496, 1144, 1354, 1590
MflI RGATCY 2 cut(s) 496, 1354
MhlI GDGCHC 2 cut(s) 102, 185
MluCI AATT 8 cut(s) 330, 671, 693, 803, 1164, 1477, 1556, 1599
MlyI GAGTC 4 cut(s) 948, 1132, 1133, 1564
MmeI TCCRAC 1 cut(s) 423
MnlI CCTC 9 cut(s) 88, 286, 293, 487, 559, 968, 1393, 1411, 1417
MroI TCCGGA 1 cut(s) 826
MroXI GAANNNNTTC 1 cut(s) 488
MseI TTAA 4 cut(s) 324, 749, 1323, 1633
MslI CAYNNNNRTG 1 cut(s) 549
MspI CCGG 4 cut(s) 186, 355, 722, 827
MspR9I CCNGG 1 cut(s) 245
Mva1269I GAATGC 1 cut(s) 1453
MvaI CCWGG 1 cut(s) 245
MvnI CGCG 1 cut(s) 266
MwoI GCNNNNNNNGC 3 cut(s) 349, 364, 575
NdeI CATATG 1 cut(s) 550
NdeII GATC 4 cut(s) 496, 1144, 1354, 1590
NlaIII CATG 8 cut(s) 124, 371, 646, 971, 1026, 1059, 1145, 1460
NlaIV GGNNCC 1 cut(s) 1356
NmeAIII GCCGAG 1 cut(s) 149
NmuCI GTSAC 2 cut(s) 730, 835
NspI RCATGY 5 cut(s) 124, 371, 646, 971, 1059
PaeI GCATGC 2 cut(s) 371, 971
PagI TCATGA 1 cut(s) 1141
PaqCI CACCTGC 1 cut(s) 413
PciI ACATGT 2 cut(s) 120, 1055
PciSI GCTCTTC 1 cut(s) 543
PcsI WCGNNNNNNNCGW 3 cut(s) 176, 343, 934
PctI GAATGC 1 cut(s) 1453
PdmI GAANNNNTTC 1 cut(s) 488
PfeI GAWTC 5 cut(s) 14, 200, 622, 682, 709
PkrI GCNGC 9 cut(s) 43, 76, 154, 263, 268, 571, 892, 895, 1174
PleI GAGTC 4 cut(s) 947, 1132, 1132, 1564
PpsI GAGTC 4 cut(s) 947, 1132, 1132, 1564
Ppu21I YACGTR 1 cut(s) 1275
PscI ACATGT 2 cut(s) 120, 1055
PsiI TTATAA 2 cut(s) 363, 1583
Psp6I CCWGG 1 cut(s) 243
PspFI CCCAGC 1 cut(s) 223
PspGI CCWGG 1 cut(s) 243
PspN4I GGNNCC 1 cut(s) 1356
PspPI GGNCC 1 cut(s) 241
PsuI RGATCY 2 cut(s) 496, 1354
RsaI GTAC 4 cut(s) 863, 1258, 1465, 1510
RsaNI GTAC 4 cut(s) 862, 1257, 1464, 1509
RseI CAYNNNNRTG 1 cut(s) 549
SapI GCTCTTC 1 cut(s) 543
SaqAI TTAA 4 cut(s) 324, 749, 1323, 1633
SatI GCNGC 9 cut(s) 42, 75, 153, 262, 267, 570, 891, 894, 1173
Sau3AI GATC 4 cut(s) 496, 1144, 1354, 1590
Sau96I GGNCC 1 cut(s) 241
ScaI AGTACT 2 cut(s) 1258, 1465
SchI GAGTC 4 cut(s) 948, 1132, 1133, 1564
ScrFI CCNGG 1 cut(s) 245
SduI GDGCHC 2 cut(s) 102, 185
SfaNI GCATC 4 cut(s) 932, 943, 1033, 1248
SfcI CTRYAG 2 cut(s) 276, 1216
SmiMI CAYNNNNRTG 1 cut(s) 549
SmlI CTYRAG 3 cut(s) 374, 1082, 1500
SmoI CTYRAG 3 cut(s) 374, 1082, 1500
SpeI ACTAGT 1 cut(s) 1429
SphI GCATGC 2 cut(s) 371, 971
Sse9I AATT 8 cut(s) 330, 671, 693, 803, 1164, 1477, 1556, 1599
SsiI CCGC 8 cut(s) 153, 160, 173, 207, 266, 269, 310, 578
SspMI CTAG 3 cut(s) 1149, 1430, 1620
StyD4I CCNGG 1 cut(s) 243
StyI CCWWGG 1 cut(s) 1148
TaaI ACNGT 4 cut(s) 85, 307, 754, 1256
TaiI ACGT 1 cut(s) 1277
TaqI TCGA 3 cut(s) 328, 492, 937
TasI AATT 8 cut(s) 330, 671, 693, 803, 1164, 1477, 1556, 1599
TatI WGTACW 3 cut(s) 861, 1256, 1463
TauI GCSGC 2 cut(s) 155, 269
TfiI GAWTC 5 cut(s) 14, 200, 622, 682, 709
Tru1I TTAA 4 cut(s) 324, 749, 1323, 1633
Tru9I TTAA 4 cut(s) 324, 749, 1323, 1633
TscAI CASTG 3 cut(s) 107, 312, 1414
TseFI GTSAC 2 cut(s) 730, 835
TseI GCWGC 7 cut(s) 41, 74, 261, 569, 890, 893, 1172
Tsp45I GTSAC 2 cut(s) 730, 835
TspDTI ATGAA 7 cut(s) 485, 614, 701, 719, 939, 1052, 1553
TspGWI ACGGA 1 cut(s) 1549
TspRI CASTG 3 cut(s) 107, 312, 1414
XapI RAATTY 1 cut(s) 1599
XceI RCATGY 5 cut(s) 124, 371, 646, 971, 1059
XmaJI CCTAGG 1 cut(s) 1148
XmiI GTMKAC 1 cut(s) 1052
XmnI GAANNNNTTC 1 cut(s) 488
XspI CTAG 3 cut(s) 1149, 1430, 1620
ZrmI AGTACT 2 cut(s) 1258, 1465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.