Prupe.8G241600_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Forward (+)
21151241 .. 21154018
2778 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G241600.3

Sequence Viewer

Length: 1536 bp
ATGTTAAATCGAACCCTGCGGAGCTCCATCGCCGCCGTCCGCCACTTCACGGCGGAGGCGCATGTGGAGACGAAGGCGGCGACCGCCAGTGTGGAGAAAAGCTCGAGCGGTGGCCGAGACACGCTGGGAAGGAGACTTATGAGCCTGGTGTTTCCAAAACGCAGCGCTGTGATTGCCATACGGAAATGGAAAGAGGAAGGGCACAAGGTGCGCAAGTATGAGCTCAATCGCATCGTTCGTGAGCTTCGCAAGCTCAAGCGATACAAACACGCACTCGAGATATGTGAATGGATGACTTTACAACAAGATATGAAGCTACTACCAGGTGATTATGCCGTTCACTTAGACTTGATTGCAAAAGTTCGTGGCTTAAATAGTGCAGAAAAGTTTTTTGAGGATCTTCCTGATCAGATGACAGGCCACCCCACCTGTACAGCTCTTCTGCATACGTATGTGCAGAATAAATTGTCTGATAAAGCAGAAGCTCTGATGGCAAAGATGTCACAGTGTGGTTACATGAAGCATCCCCTTGCTTATAACCACATGTTGTCCTTGTACGTTTCCAATGGGCAATTTGACAAGGTTCCAGAAGTAATTCAGGAGTTGAAGAGTAATACTTCGCCAGATGTTGTTACTTACAATCTGTGGTTAACTGTTTGTGCTTCGCAAAGTGATGTTGAAACTGCAGAAAAAGTTTTCCTTGAGTTAAAGAAGGCAAAGCTAAATCCTGACTGGGTTACCTTTAGTACGTTAACCAACTTGTACATAAAAAGTTTGCTGACCGAAAAAGCAGCAGTTACCTTGAAGGAGATGGAGAAAATAGCATCTCGGAAAAATCGAGCTGCATATTCATCCCTGCTCAGCCTGCATACAAACATCGGCGATGAGGATGGCGTTTGGCGAATCTGGAAGAAAATGAAATCATGTTTCCGCAAAATGAATGATGCTGAGTACACATGTATGCTATCTTCGCTTGTGAAACTCAAGGAGTTTGAAGAAGCTGAGAAACTCTATACTGAGTGGGAGTCTGTTTCTGAGACTCATGATGCCAGGGTTTCAAATATACTTCTTGCAGCGTATATCAACAAAGACCAAATGGAAATGGCTGAAACATTTCATAATCGCATGGTGCAAAATGGCATAACGCCTTGTTACAGTACTTGGGAGCTTCTTACATGGGGTTTTTTGAAACAAAAACATACGGAAAAAGTGCTAGATAATTTTAAGAAAGCTGTTGGTAGTGTGAAAAGATGGGATCCTGACAAAAGATTGATTGGAGAAGTATTTAACAGGCTCAAGGAGGAAGGCAATATAAAAGGGGCAGAAGAACTATTGTTGTTTCTTCGGAATGCTGGTCATGTGAGCACTGAGATATATAATTCAGTTCTAAGAACTTATGCAGAAGCTGGTAAAATGCCACTTATAGTTGCAGAAAGGATGGAGAAGGACAATGTTCAGTTGGATGAAGAGACTCGCAGACTTATAAAACTGACTAGCACAATGTGCGTGAGCGAAGTTCCTAACATACGCTCTTGA

Protein Analysis

512

Amino Acids

58.69

Weight (kDa)

9.01

Isoelectric Point (pI)

40.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013302)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 537, 1484
Acc16I TGCGCA 1 cut(s) 212
AccBSI CCGCTC 1 cut(s) 108
AciI CCGC 8 cut(s) 19, 33, 40, 53, 77, 84, 108, 931
AclWI GGATC 3 cut(s) 405, 1250, 1263
AcoI YGGCCR 1 cut(s) 112
AdeI CACNNNGTG 3 cut(s) 208, 509, 1503
AfaI GTAC 6 cut(s) 433, 557, 748, 764, 953, 1159
AfeI AGCGCT 1 cut(s) 166
AfiI CCNNNNNNNGG 1 cut(s) 49
AflIII ACRYGT 2 cut(s) 543, 956
AgsI TTSAA 6 cut(s) 607, 680, 805, 995, 1059, 1189
AjnI CCWGG 3 cut(s) 144, 322, 1049
Alw21I GWGCWC 3 cut(s) 26, 225, 1367
Alw26I GTCTC 5 cut(s) 62, 111, 127, 1031, 1463
AlwI GGATC 3 cut(s) 405, 1250, 1263
AlwNI CAGNNNCTG 1 cut(s) 1406
Ama87I CYCGRG 2 cut(s) 103, 275
Aor51HI AGCGCT 1 cut(s) 166
AoxI GGCC 2 cut(s) 112, 418
ApeKI GCWGC 4 cut(s) 162, 791, 842, 1073
Asp700I GAANNNNTTC 2 cut(s) 594, 1113
AspLEI GCGC 3 cut(s) 61, 167, 213
AsuHPI GGTGA 1 cut(s) 338
AvaI CYCGRG 2 cut(s) 103, 275
BaeGI GKGCMC 1 cut(s) 204
BamHI GGATCC 1 cut(s) 1255
BanII GRGCYC 2 cut(s) 26, 225
BarI GAAGNNNNNNTAC 2 cut(s) 952, 984
Bbv12I GWGCWC 3 cut(s) 26, 225, 1367
BbvI GCAGC 4 cut(s) 174, 803, 829, 1085
BccI CCATC 6 cut(s) 35, 484, 805, 884, 1245, 1432
BceAI ACGGC 3 cut(s) 20, 66, 320
BciT130I CCWGG 3 cut(s) 146, 324, 1051
BclI TGATCA 1 cut(s) 406
BcoDI GTCTC 5 cut(s) 62, 111, 127, 1031, 1463
BfaI CTAG 2 cut(s) 1214, 1494
BfmI CTRYAG 1 cut(s) 684
BfoI RGCGCY 1 cut(s) 168
BisI GCNGC 6 cut(s) 33, 78, 163, 792, 843, 1074
BlpI GCTNAGC 1 cut(s) 860
BlsI GCNGC 6 cut(s) 34, 79, 164, 793, 844, 1075
BmcAI AGTACT 1 cut(s) 1159
Bme1390I CCNGG 3 cut(s) 146, 324, 1051
BmeT110I CYCGRG 2 cut(s) 103, 275
BmiI GGNNCC 2 cut(s) 585, 1257
BmrFI CCNGG 3 cut(s) 146, 324, 1051
BmrI ACTGGG 1 cut(s) 742
BmsI GCATC 5 cut(s) 240, 532, 833, 934, 1036
BmuI ACTGGG 1 cut(s) 742
BplI GAGNNNNNCTC 2 cut(s) 86, 118
Bpu1102I GCTNAGC 1 cut(s) 860
BpuEI CTTGAG 4 cut(s) 239, 722, 968, 1280
BsaAI YACGTR 1 cut(s) 450
BsaJI CCNNGG 1 cut(s) 1050
Bsc4I CCNNNNNNNGG 1 cut(s) 49
Bse1I ACTGG 2 cut(s) 87, 737
BseBI CCWGG 3 cut(s) 146, 324, 1051
BseDI CCNNGG 1 cut(s) 1050
BseGI GGATG 6 cut(s) 297, 523, 851, 895, 1443, 1468
BseLI CCNNNNNNNGG 1 cut(s) 49
BseMII CTCAG 6 cut(s) 874, 939, 993, 1008, 1026, 1359
BseNI ACTGG 2 cut(s) 87, 737
BseSI GKGCMC 1 cut(s) 204
BseXI GCAGC 4 cut(s) 174, 803, 829, 1085
BseYI CCCAGC 1 cut(s) 124
BsgI GTGCAG 2 cut(s) 399, 476
Bsh1285I CGRYCG 1 cut(s) 84
BshFI GGCC 2 cut(s) 114, 420
BsiEI CGRYCG 1 cut(s) 84
BsiHKAI GWGCWC 3 cut(s) 26, 225, 1367
BsiHKCI CYCGRG 2 cut(s) 103, 275
BslI CCNNNNNNNGG 1 cut(s) 49
BsmAI GTCTC 5 cut(s) 62, 111, 127, 1031, 1463
BsmBI CGTCTC 1 cut(s) 62
BsmI GAATGC 1 cut(s) 1354
BsnI GGCC 2 cut(s) 114, 420
BsoBI CYCGRG 2 cut(s) 103, 275
Bsp1286I GDGCHC 4 cut(s) 26, 204, 225, 1367
Bsp1407I TGTACA 2 cut(s) 431, 762
Bsp143I GATC 3 cut(s) 397, 406, 1255
Bsp1720I GCTNAGC 1 cut(s) 860
BspACI CCGC 8 cut(s) 19, 33, 40, 53, 77, 84, 108, 931
BspANI GGCC 2 cut(s) 114, 420
BspCNI CTCAG 6 cut(s) 873, 940, 994, 1009, 1027, 1360
BspHI TCATGA 1 cut(s) 1042
BspLI GGNNCC 2 cut(s) 585, 1257
BspMAI CTGCAG 1 cut(s) 688
BspPI GGATC 3 cut(s) 405, 1250, 1263
BspQI GCTCTTC 1 cut(s) 444
BsrBI CCGCTC 1 cut(s) 108
BsrGI TGTACA 2 cut(s) 431, 762
BsrI ACTGG 2 cut(s) 87, 737
BssECI CCNNGG 1 cut(s) 1050
BssMI GATC 3 cut(s) 397, 406, 1255
Bst2UI CCWGG 3 cut(s) 146, 324, 1051
Bst4CI ACNGT 3 cut(s) 507, 655, 1157
Bst6I CTCTTC 3 cut(s) 444, 602, 1461
BstAPI GCANNNNNTGC 2 cut(s) 208, 1503
BstAUI TGTACA 2 cut(s) 431, 762
BstBAI YACGTR 1 cut(s) 450
BstC8I GCNNGC 2 cut(s) 251, 866
BstDEI CTNAG 8 cut(s) 343, 860, 948, 1002, 1017, 1035, 1368, 1388
BstEII GGTNACC 1 cut(s) 736
BstF5I GGATG 6 cut(s) 297, 523, 851, 895, 1443, 1468
BstH2I RGCGCY 1 cut(s) 168
BstHHI GCGC 3 cut(s) 61, 167, 213
BstKTI GATC 3 cut(s) 400, 409, 1258
BstMAI GTCTC 5 cut(s) 62, 111, 127, 1031, 1463
BstMBI GATC 3 cut(s) 397, 406, 1255
BstMCI CGRYCG 1 cut(s) 84
BstMWI GCNNNNNNNGC 8 cut(s) 83, 173, 208, 250, 491, 865, 970, 1503
BstNI CCWGG 3 cut(s) 146, 324, 1051
BstNSI RCATGY 3 cut(s) 65, 547, 960
BstPI GGTNACC 1 cut(s) 736
BstSCI CCNGG 3 cut(s) 144, 322, 1049
BstSFI CTRYAG 1 cut(s) 684
BstSLI GKGCMC 1 cut(s) 204
BstSNI TACGTA 1 cut(s) 450
BstV1I GCAGC 4 cut(s) 174, 803, 829, 1085
BstX2I RGATCY 2 cut(s) 397, 1255
BstYI RGATCY 2 cut(s) 397, 1255
BsuRI GGCC 2 cut(s) 114, 420
BtgZI GCGATG 2 cut(s) 13, 897
BtsCI GGATG 6 cut(s) 297, 523, 851, 895, 1443, 1468
BtsIMutI CAGTG 3 cut(s) 94, 512, 1365
Cac8I GCNNGC 2 cut(s) 251, 866
CaiI CAGNNNCTG 1 cut(s) 1406
CciI TCATGA 1 cut(s) 1042
CfoI GCGC 3 cut(s) 61, 167, 213
CsiI ACCWGGT 1 cut(s) 322
Csp6I GTAC 6 cut(s) 432, 556, 747, 763, 952, 1158
CviAII CATG 9 cut(s) 62, 517, 544, 924, 957, 1043, 1126, 1176, 1358
CviQI GTAC 6 cut(s) 432, 556, 747, 763, 952, 1158
DdeI CTNAG 8 cut(s) 343, 860, 948, 1002, 1017, 1035, 1368, 1388
DpnI GATC 3 cut(s) 399, 408, 1257
DpnII GATC 3 cut(s) 397, 406, 1255
DraIII CACNNNGTG 3 cut(s) 208, 509, 1503
EaeI YGGCCR 1 cut(s) 112
Eam1104I CTCTTC 3 cut(s) 444, 602, 1461
EarI CTCTTC 3 cut(s) 444, 602, 1461
EciI GGCGGA 2 cut(s) 29, 68
Ecl136II GAGCTC 2 cut(s) 24, 223
Eco105I TACGTA 1 cut(s) 450
Eco24I GRGCYC 2 cut(s) 26, 225
Eco47III AGCGCT 1 cut(s) 166
Eco53kI GAGCTC 2 cut(s) 24, 223
Eco88I CYCGRG 2 cut(s) 103, 275
Eco91I GGTNACC 1 cut(s) 736
EcoICRI GAGCTC 2 cut(s) 24, 223
EcoO65I GGTNACC 1 cut(s) 736
EcoRII CCWGG 3 cut(s) 144, 322, 1049
EcoT38I GRGCYC 2 cut(s) 26, 225
Esp3I CGTCTC 1 cut(s) 62
FaeI CATG 9 cut(s) 65, 520, 547, 927, 960, 1046, 1129, 1179, 1361
FalI AAGNNNNNCTT 2 cut(s) 684, 716
FatI CATG 9 cut(s) 61, 516, 543, 923, 956, 1042, 1125, 1175, 1357
FbaI TGATCA 1 cut(s) 406
Fnu4HI GCNGC 6 cut(s) 33, 78, 163, 792, 843, 1074
FokI GGATG 6 cut(s) 304, 510, 838, 902, 1450, 1475
FriOI GRGCYC 2 cut(s) 26, 225
Fsp4HI GCNGC 6 cut(s) 33, 78, 163, 792, 843, 1074
FspBI CTAG 2 cut(s) 1214, 1494
FspI TGCGCA 1 cut(s) 212
GlaI GCGC 3 cut(s) 60, 166, 212
GluI GCNGC 6 cut(s) 33, 78, 163, 792, 843, 1074
GsaI CCCAGC 1 cut(s) 128
HaeII RGCGCY 1 cut(s) 168
HaeIII GGCC 2 cut(s) 114, 420
HhaI GCGC 3 cut(s) 61, 167, 213
Hin1II CATG 9 cut(s) 65, 520, 547, 927, 960, 1046, 1129, 1179, 1361
Hin6I GCGC 3 cut(s) 59, 165, 211
HinP1I GCGC 3 cut(s) 59, 165, 211
HincII GTYRAC 2 cut(s) 651, 753
HindII GTYRAC 2 cut(s) 651, 753
HinfI GANTC 4 cut(s) 903, 1025, 1039, 1471
HpaI GTTAAC 2 cut(s) 651, 753
HphI GGTGA 1 cut(s) 338
Hpy166II GTNNAC 4 cut(s) 340, 651, 753, 954
Hpy188I TCNGA 6 cut(s) 411, 472, 489, 831, 1036, 1347
Hpy8I GTNNAC 4 cut(s) 340, 651, 753, 954
HpyAV CCTTC 7 cut(s) 67, 123, 191, 706, 799, 1298, 1438
HpyCH4III ACNGT 3 cut(s) 507, 655, 1157
HpyCH4IV ACGT 3 cut(s) 449, 558, 749
HpyF10VI GCNNNNNNNGC 8 cut(s) 83, 173, 208, 250, 491, 865, 970, 1503
HpyF3I CTNAG 8 cut(s) 343, 860, 948, 1002, 1017, 1035, 1368, 1388
HpySE526I ACGT 3 cut(s) 449, 558, 749
Hsp92II CATG 9 cut(s) 65, 520, 547, 927, 960, 1046, 1129, 1179, 1361
HspAI GCGC 3 cut(s) 59, 165, 211
Ksp22I TGATCA 1 cut(s) 406
KspAI GTTAAC 2 cut(s) 651, 753
Kzo9I GATC 3 cut(s) 397, 406, 1255
LguI GCTCTTC 1 cut(s) 444
LmnI GCTCC 3 cut(s) 21, 29, 1165
Lsp1109I GCAGC 4 cut(s) 174, 803, 829, 1085
LweI GCATC 5 cut(s) 240, 532, 833, 934, 1036
MabI ACCWGGT 1 cut(s) 322
MaeI CTAG 2 cut(s) 1214, 1494
MaeII ACGT 3 cut(s) 449, 558, 749
MaeIII GTNAC 6 cut(s) 501, 512, 631, 736, 796, 1151
MalI GATC 3 cut(s) 399, 408, 1257
MbiI CCGCTC 1 cut(s) 108
MboI GATC 3 cut(s) 397, 406, 1255
MboII GAAGA 9 cut(s) 392, 431, 619, 922, 960, 1007, 1334, 1337, 1478
MflI RGATCY 2 cut(s) 397, 1255
MhlI GDGCHC 4 cut(s) 26, 204, 225, 1367
MluCI AATT 5 cut(s) 464, 572, 594, 1219, 1378
MlyI GAGTC 3 cut(s) 1033, 1034, 1465
MmeI TCCRAC 1 cut(s) 1440
MnlI CCTC 5 cut(s) 49, 187, 388, 880, 1294
MroXI GAANNNNTTC 2 cut(s) 594, 1113
MseI TTAA 7 cut(s) 5, 371, 650, 707, 752, 1224, 1287
MslI CAYNNNNRTG 2 cut(s) 450, 959
MspR9I CCNGG 3 cut(s) 146, 324, 1051
Mva1269I GAATGC 1 cut(s) 1354
MvaI CCWGG 3 cut(s) 146, 324, 1051
MwoI GCNNNNNNNGC 8 cut(s) 83, 173, 208, 250, 491, 865, 970, 1503
NdeII GATC 3 cut(s) 397, 406, 1255
NlaIII CATG 9 cut(s) 65, 520, 547, 927, 960, 1046, 1129, 1179, 1361
NlaIV GGNNCC 2 cut(s) 585, 1257
NmeAIII GCCGAG 1 cut(s) 140
NmuCI GTSAC 1 cut(s) 501
NsbI TGCGCA 1 cut(s) 212
NspI RCATGY 3 cut(s) 65, 547, 960
PaeR7I CTCGAG 2 cut(s) 103, 275
PagI TCATGA 1 cut(s) 1042
PciI ACATGT 2 cut(s) 543, 956
PciSI GCTCTTC 1 cut(s) 444
PcsI WCGNNNNNNNCGW 3 cut(s) 77, 235, 835
PctI GAATGC 1 cut(s) 1354
PdmI GAANNNNTTC 2 cut(s) 594, 1113
PfeI GAWTC 1 cut(s) 903
PkrI GCNGC 6 cut(s) 34, 79, 164, 793, 844, 1075
PleI GAGTC 3 cut(s) 1033, 1033, 1465
PpsI GAGTC 3 cut(s) 1033, 1033, 1465
Ppu21I YACGTR 1 cut(s) 450
PscI ACATGT 2 cut(s) 543, 956
PsiI TTATAA 2 cut(s) 537, 1484
Psp124BI GAGCTC 2 cut(s) 26, 225
Psp6I CCWGG 3 cut(s) 144, 322, 1049
PspEI GGTNACC 1 cut(s) 736
PspFI CCCAGC 1 cut(s) 124
PspGI CCWGG 3 cut(s) 144, 322, 1049
PspN4I GGNNCC 2 cut(s) 585, 1257
PspXI VCTCGAGB 1 cut(s) 103
PstI CTGCAG 1 cut(s) 688
PstNI CAGNNNCTG 1 cut(s) 1406
PsuI RGATCY 2 cut(s) 397, 1255
RsaI GTAC 6 cut(s) 433, 557, 748, 764, 953, 1159
RsaNI GTAC 6 cut(s) 432, 556, 747, 763, 952, 1158
RseI CAYNNNNRTG 2 cut(s) 450, 959
SacI GAGCTC 2 cut(s) 26, 225
SapI GCTCTTC 1 cut(s) 444
SaqAI TTAA 7 cut(s) 5, 371, 650, 707, 752, 1224, 1287
SatI GCNGC 6 cut(s) 33, 78, 163, 792, 843, 1074
Sau3AI GATC 3 cut(s) 397, 406, 1255
ScaI AGTACT 1 cut(s) 1159
SchI GAGTC 3 cut(s) 1033, 1034, 1465
ScrFI CCNGG 3 cut(s) 146, 324, 1051
SduI GDGCHC 4 cut(s) 26, 204, 225, 1367
SexAI ACCWGGT 1 cut(s) 322
SfaNI GCATC 5 cut(s) 240, 532, 833, 934, 1036
SfcI CTRYAG 1 cut(s) 684
Sfr274I CTCGAG 2 cut(s) 103, 275
SlaI CTCGAG 2 cut(s) 103, 275
SmiMI CAYNNNNRTG 2 cut(s) 450, 959
SmlI CTYRAG 6 cut(s) 103, 254, 275, 701, 983, 1295
SmoI CTYRAG 6 cut(s) 103, 254, 275, 701, 983, 1295
SnaBI TACGTA 1 cut(s) 450
Sse9I AATT 5 cut(s) 464, 572, 594, 1219, 1378
SsiI CCGC 8 cut(s) 19, 33, 40, 53, 77, 84, 108, 931
SspMI CTAG 2 cut(s) 1214, 1494
SstI GAGCTC 2 cut(s) 26, 225
StyD4I CCNGG 3 cut(s) 144, 322, 1049
TaaI ACNGT 3 cut(s) 507, 655, 1157
TaiI ACGT 3 cut(s) 452, 561, 752
TaqI TCGA 4 cut(s) 10, 104, 276, 838
TaqII GACCGA 1 cut(s) 797
TasI AATT 5 cut(s) 464, 572, 594, 1219, 1378
TatI WGTACW 4 cut(s) 431, 762, 951, 1157
TauI GCSGC 2 cut(s) 35, 80
TfiI GAWTC 1 cut(s) 903
Tru1I TTAA 7 cut(s) 5, 371, 650, 707, 752, 1224, 1287
Tru9I TTAA 7 cut(s) 5, 371, 650, 707, 752, 1224, 1287
TscAI CASTG 3 cut(s) 94, 512, 1372
TseFI GTSAC 1 cut(s) 501
TseI GCWGC 4 cut(s) 162, 791, 842, 1073
Tsp45I GTSAC 1 cut(s) 501
TspDTI ATGAA 7 cut(s) 326, 533, 840, 932, 953, 1106, 1479
TspGWI ACGGA 2 cut(s) 196, 1217
TspRI CASTG 3 cut(s) 94, 512, 1372
XceI RCATGY 3 cut(s) 65, 547, 960
XhoI CTCGAG 2 cut(s) 103, 275
XmnI GAANNNNTTC 2 cut(s) 594, 1113
XspI CTAG 2 cut(s) 1214, 1494
ZrmI AGTACT 1 cut(s) 1159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.