Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0013302

Physical Location & Seq

Genomic Coordinates Forward (+)

34793805 .. 34795807

Gene Structure 2003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0217700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGAGGAATACACGGTCAATTCAGGTCAATGTATTAATAAAGCTAAATCTAAACTGTTTTTGGGAAAGTTTGCATCCCACAGGGAAGATAGTAGTCAACGACTTCTAGGCATTCAAGTAGGATCCTTTCCTTTCACTTACCGTGGGGTGCCTATCTTTATGGGTTATCCCAAATCAGATTTCTTGATGCCTATTGCCGACAACGTCTGGCTTACAGCCTCCTTCATATTACAAGAAGTCTTTAGTCTAGCTGGGTTTGAGAAAACTTTGGCCGACTTTACTTTCAAGAGTGCAGGTGCTCTGCCAGCAACAGAAACTAATGATGTATTGGTTTGGGTGGCTGCTTTTTCTGGCTGTTTGTCATCCAAGTTGGCTTATAGTTCTCTAGCCAACCAGCGGCCCAAGCTTGCATGGGAAGAAAGAATTTGGAATGCTGTTATCCAGCCTCGAAAAAGCTTGACCACCTGGAAGATATTGCACAATCGGATTAATTCAGACGGAAAAGAGGATGCAGTGGATAGGTTGCACATTCCTCCAGAGATGACTCTGCACTATTTCTTGGTGCTTTTGCTCATCAAGTTTAATGTCCCAAGTGCTTTGGATGCTGAGAATCCACACCTAATTCCATGGCGCTTAAGAACTTTATGGGCCAATTGTCATCTTATGGTTCAACAAATGAGGGGTGCTCTTCATGTTGGAGTTCAGTGGTGGCCTGTCGTGCCACAGTTTCTAGTCTCTTCTTTTGGTCATGACTTCTCCTCTAGACCAGACTACCGTTTCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

261

Amino Acids

29.71

Weight (kDa)

8.96

Isoelectric Point (pI)

33.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02820
fragaria_vesca	FvH4_2g23640
malus_domestica	MD03G1265900.v1.1
prunus_persica	Prupe.8G241600_v2.0.a1 Prupe.8G241600_v2.0.a1 Prupe.8G241600_v2.0.a1
pyrus_communis	pycom03g21240
rosa_chinensis	RchiOBHm_Chr6g0291111
rosa_laevigata	RLG00000012143
rosa_multiflora	Rmu_sc0004642.1_g000017 Rmu_sc0033743.1_g000001
rosa_roxburghii	Rroxscaffold_7G00176370
rosa_rugosa	Rorug06G0217700
rosa_samantha	Rh6AG327900 Rh6BG335400 Rh6CG341600 Rh6DG328800
rosa_wichuraiana	Rw6G028520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	284
Acc36I	ACCTGC	1 cut(s)	284
AccB1I	GGYRCC	1 cut(s)	148
AciI	CCGC	1 cut(s)	397
AclWI	GGATC	2 cut(s)	117, 130
AcoI	YGGCCR	1 cut(s)	270
AcsI	RAATTY	1 cut(s)	423
AfiI	CCNNNNNNNGG	1 cut(s)	396
AflII	CTTAAG	1 cut(s)	634
AgsI	TTSAA	3 cut(s)	116, 286, 671
AjnI	CCWGG	1 cut(s)	464
AjuI	GAANNNNNNNTTGG	2 cut(s)	164, 196
AluBI	AGCT	4 cut(s)	44, 251, 406, 456
AluI	AGCT	4 cut(s)	44, 251, 406, 456
Alw21I	GWGCWC	2 cut(s)	301, 688
Alw26I	GTCTC	1 cut(s)	739
AlwI	GGATC	2 cut(s)	117, 130
AoxI	GGCC	4 cut(s)	270, 398, 648, 710
ApeKI	GCWGC	1 cut(s)	341
ApoI	RAATTY	1 cut(s)	423
AseI	ATTAAT	2 cut(s)	36, 489
AspLEI	GCGC	1 cut(s)	633
AspS9I	GGNCC	2 cut(s)	399, 648
BamHI	GGATCC	1 cut(s)	122
BanI	GGYRCC	1 cut(s)	148
Bbv12I	GWGCWC	2 cut(s)	301, 688
BbvI	GCAGC	1 cut(s)	328
BciT130I	CCWGG	1 cut(s)	466
BcoDI	GTCTC	1 cut(s)	739
BfaI	CTAG	5 cut(s)	107, 248, 386, 731, 762
BfoI	RGCGCY	1 cut(s)	634
BfrI	CTTAAG	1 cut(s)	634
BfuAI	ACCTGC	1 cut(s)	284
BisI	GCNGC	2 cut(s)	342, 398
BlsI	GCNGC	2 cut(s)	343, 399
Bme1390I	CCNGG	1 cut(s)	466
BmgT120I	GGNCC	2 cut(s)	399, 648
BmiI	GGNNCC	2 cut(s)	124, 150
BmrFI	CCNGG	1 cut(s)	466
BmsI	GCATC	4 cut(s)	83, 177, 499, 592
BplI	GAGNNNNNCTC	2 cut(s)	670, 702
BpmI	CTGGAG	1 cut(s)	519
BsaJI	CCNNGG	2 cut(s)	142, 626
Bsc4I	CCNNNNNNNGG	1 cut(s)	396
BseBI	CCWGG	1 cut(s)	466
BseDI	CCNNGG	2 cut(s)	142, 626
BseGI	GGATG	4 cut(s)	74, 362, 514, 607
BseLI	CCNNNNNNNGG	1 cut(s)	396
BseMII	CTCAG	1 cut(s)	597
BseRI	GAGGAG	1 cut(s)	748
BseXI	GCAGC	1 cut(s)	328
BseYI	CCCAGC	1 cut(s)	251
BsgI	GTGCAG	2 cut(s)	312, 533
BshFI	GGCC	4 cut(s)	272, 400, 650, 712
BshNI	GGYRCC	1 cut(s)	148
BsiHKAI	GWGCWC	2 cut(s)	301, 688
BslFI	GGGAC	1 cut(s)	572
BslI	CCNNNNNNNGG	1 cut(s)	396
BsmAI	GTCTC	1 cut(s)	739
BsmFI	GGGAC	1 cut(s)	572
BsmI	GAATGC	2 cut(s)	111, 436
BsnI	GGCC	4 cut(s)	272, 400, 650, 712
Bsp1286I	GDGCHC	2 cut(s)	301, 688
Bsp143I	GATC	1 cut(s)	122
Bsp19I	CCATGG	1 cut(s)	626
BspACI	CCGC	1 cut(s)	397
BspANI	GGCC	4 cut(s)	272, 400, 650, 712
BspCNI	CTCAG	1 cut(s)	598
BspHI	TCATGA	2 cut(s)	748, 782
BspLI	GGNNCC	2 cut(s)	124, 150
BspMI	ACCTGC	1 cut(s)	284
BspPI	GGATC	2 cut(s)	117, 130
BspQI	GCTCTTC	1 cut(s)	693
BspT107I	GGYRCC	1 cut(s)	148
BspTI	CTTAAG	1 cut(s)	634
BssECI	CCNNGG	2 cut(s)	142, 626
BssMI	GATC	1 cut(s)	122
BssT1I	CCWWGG	1 cut(s)	626
Bst2UI	CCWGG	1 cut(s)	466
Bst4CI	ACNGT	5 cut(s)	16, 57, 143, 726, 776
Bst6I	CTCTTC	2 cut(s)	693, 742
BstAFI	CTTAAG	1 cut(s)	634
BstC8I	GCNNGC	2 cut(s)	306, 408
BstDEI	CTNAG	1 cut(s)	606
BstDSI	CCRYGG	2 cut(s)	142, 626
BstF5I	GGATG	4 cut(s)	74, 362, 514, 607
BstH2I	RGCGCY	1 cut(s)	634
BstHHI	GCGC	1 cut(s)	633
BstKTI	GATC	1 cut(s)	125
BstMAI	GTCTC	1 cut(s)	739
BstMBI	GATC	1 cut(s)	122
BstMWI	GCNNNNNNNGC	4 cut(s)	305, 403, 602, 718
BstNI	CCWGG	1 cut(s)	466
BstSCI	CCNGG	1 cut(s)	464
BstV1I	GCAGC	1 cut(s)	328
BstX2I	RGATCY	1 cut(s)	122
BstYI	RGATCY	1 cut(s)	122
BsuRI	GGCC	4 cut(s)	272, 400, 650, 712
BtgI	CCRYGG	2 cut(s)	142, 626
BtsCI	GGATG	4 cut(s)	74, 362, 514, 607
BtsI	GCAGTG	1 cut(s)	519
BtsIMutI	CAGTG	2 cut(s)	519, 710
BveI	ACCTGC	1 cut(s)	284
Cac8I	GCNNGC	2 cut(s)	306, 408
CciI	TCATGA	2 cut(s)	748, 782
CfoI	GCGC	1 cut(s)	633
Cfr13I	GGNCC	2 cut(s)	399, 648
CviAII	CATG	5 cut(s)	411, 627, 692, 749, 783
DdeI	CTNAG	1 cut(s)	606
DpnI	GATC	1 cut(s)	124
DpnII	GATC	1 cut(s)	122
EaeI	YGGCCR	1 cut(s)	270
Eam1104I	CTCTTC	2 cut(s)	693, 742
EarI	CTCTTC	2 cut(s)	693, 742
Eco130I	CCWWGG	1 cut(s)	626
EcoRII	CCWGG	1 cut(s)	464
EcoT14I	CCWWGG	1 cut(s)	626
ErhI	CCWWGG	1 cut(s)	626
FaeI	CATG	5 cut(s)	414, 630, 695, 752, 786
FaqI	GGGAC	1 cut(s)	572
FatI	CATG	5 cut(s)	410, 626, 691, 748, 782
Fnu4HI	GCNGC	2 cut(s)	342, 398
FokI	GGATG	4 cut(s)	61, 349, 521, 614
Fsp4HI	GCNGC	2 cut(s)	342, 398
FspBI	CTAG	5 cut(s)	107, 248, 386, 731, 762
GlaI	GCGC	1 cut(s)	632
GluI	GCNGC	2 cut(s)	342, 398
GsaI	CCCAGC	1 cut(s)	255
GsuI	CTGGAG	1 cut(s)	519
HaeII	RGCGCY	1 cut(s)	634
HaeIII	GGCC	4 cut(s)	272, 400, 650, 712
HhaI	GCGC	1 cut(s)	633
Hin1II	CATG	5 cut(s)	414, 630, 695, 752, 786
Hin6I	GCGC	1 cut(s)	631
HinP1I	GCGC	1 cut(s)	631
HincII	GTYRAC	1 cut(s)	98
HindII	GTYRAC	1 cut(s)	98
HindIII	AAGCTT	2 cut(s)	404, 454
HinfI	GANTC	2 cut(s)	544, 610
Hpy166II	GTNNAC	1 cut(s)	98
Hpy188I	TCNGA	3 cut(s)	178, 486, 496
Hpy188III	TCNNGA	6 cut(s)	184, 286, 536, 749, 762, 783
Hpy8I	GTNNAC	1 cut(s)	98
HpyAV	CCTTC	1 cut(s)	232
HpyCH4III	ACNGT	5 cut(s)	16, 57, 143, 726, 776
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	7 cut(s)	74, 293, 410, 478, 512, 526, 550
HpyF10VI	GCNNNNNNNGC	4 cut(s)	305, 403, 602, 718
HpyF3I	CTNAG	1 cut(s)	606
HpySE526I	ACGT	1 cut(s)	204
Hsp92II	CATG	5 cut(s)	414, 630, 695, 752, 786
HspAI	GCGC	1 cut(s)	631
Kzo9I	GATC	1 cut(s)	122
LguI	GCTCTTC	1 cut(s)	693
Lsp1109I	GCAGC	1 cut(s)	328
LweI	GCATC	4 cut(s)	83, 177, 499, 592
MaeI	CTAG	5 cut(s)	107, 248, 386, 731, 762
MaeII	ACGT	1 cut(s)	204
MalI	GATC	1 cut(s)	124
MboI	GATC	1 cut(s)	122
MboII	GAAGA	5 cut(s)	98, 428, 481, 680, 729
MfeI	CAATTG	1 cut(s)	652
MflI	RGATCY	1 cut(s)	122
MhlI	GDGCHC	2 cut(s)	301, 688
MluCI	AATT	5 cut(s)	19, 423, 490, 621, 652
MlyI	GAGTC	1 cut(s)	538
MmeI	TCCRAC	1 cut(s)	676
MnlI	CCTC	6 cut(s)	229, 456, 499, 543, 672, 769
MseI	TTAA	4 cut(s)	36, 489, 582, 635
MspA1I	CMGCKG	1 cut(s)	397
MspCI	CTTAAG	1 cut(s)	634
MspR9I	CCNGG	1 cut(s)	466
MunI	CAATTG	1 cut(s)	652
Mva1269I	GAATGC	2 cut(s)	111, 436
MvaI	CCWGG	1 cut(s)	466
MwoI	GCNNNNNNNGC	4 cut(s)	305, 403, 602, 718
NcoI	CCATGG	1 cut(s)	626
NdeII	GATC	1 cut(s)	122
NlaIII	CATG	5 cut(s)	414, 630, 695, 752, 786
NlaIV	GGNNCC	2 cut(s)	124, 150
PagI	TCATGA	2 cut(s)	748, 782
PaqCI	CACCTGC	1 cut(s)	284
PciSI	GCTCTTC	1 cut(s)	693
PctI	GAATGC	2 cut(s)	111, 436
PfeI	GAWTC	1 cut(s)	610
PflFI	GACNNNGTC	1 cut(s)	203
PkrI	GCNGC	2 cut(s)	343, 399
PleI	GAGTC	1 cut(s)	538
PpsI	GAGTC	1 cut(s)	538
PshBI	ATTAAT	2 cut(s)	36, 489
Psp6I	CCWGG	1 cut(s)	464
PspFI	CCCAGC	1 cut(s)	251
PspGI	CCWGG	1 cut(s)	464
PspN4I	GGNNCC	2 cut(s)	124, 150
PspPI	GGNCC	2 cut(s)	399, 648
PsuI	RGATCY	1 cut(s)	122
PsyI	GACNNNGTC	1 cut(s)	203
SapI	GCTCTTC	1 cut(s)	693
SaqAI	TTAA	4 cut(s)	36, 489, 582, 635
SatI	GCNGC	2 cut(s)	342, 398
Sau3AI	GATC	1 cut(s)	122
Sau96I	GGNCC	2 cut(s)	399, 648
SchI	GAGTC	1 cut(s)	538
ScrFI	CCNGG	1 cut(s)	466
SduI	GDGCHC	2 cut(s)	301, 688
SfaNI	GCATC	4 cut(s)	83, 177, 499, 592
SmlI	CTYRAG	1 cut(s)	634
SmoI	CTYRAG	1 cut(s)	634
Sse9I	AATT	5 cut(s)	19, 423, 490, 621, 652
SsiI	CCGC	1 cut(s)	397
SspMI	CTAG	5 cut(s)	107, 248, 386, 731, 762
StyD4I	CCNGG	1 cut(s)	464
StyI	CCWWGG	1 cut(s)	626
TaaI	ACNGT	5 cut(s)	16, 57, 143, 726, 776
TaiI	ACGT	1 cut(s)	207
TaqI	TCGA	1 cut(s)	448
TasI	AATT	5 cut(s)	19, 423, 490, 621, 652
TauI	GCSGC	1 cut(s)	400
TfiI	GAWTC	1 cut(s)	610
Tru1I	TTAA	4 cut(s)	36, 489, 582, 635
Tru9I	TTAA	4 cut(s)	36, 489, 582, 635
TscAI	CASTG	2 cut(s)	519, 710
TseI	GCWGC	1 cut(s)	341
TspDTI	ATGAA	2 cut(s)	214, 680
TspGWI	ACGGA	1 cut(s)	513
TspRI	CASTG	2 cut(s)	519, 710
Tth111I	GACNNNGTC	1 cut(s)	203
Vha464I	CTTAAG	1 cut(s)	634
VspI	ATTAAT	2 cut(s)	36, 489
XapI	RAATTY	1 cut(s)	423
XbaI	TCTAGA	1 cut(s)	761
XspI	CTAG	5 cut(s)	107, 248, 386, 731, 762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.