AT4G02940

oxidoreductase, 2OG-Fe(II) oxygenase family protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
1306313 .. 1311038
4726 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G02940.1

Sequence Viewer

Length: 1710 bp
ATGACGATTGCGGCAGCGCCAGCACGCCAGACAGATCGATCAGCCACTGGTTTCAACCCTGCTTACGTCACGACGGCGAAGGCGGTGAGCGTTCCGGTTCAAGTTCCTCCGGCGACTGTGGTTTCCGAAGGATTAGGTAAAGATGCGTTGATCTCATGGTTCAGAGGAGAATTCGCTGCGGCAAACGCGATAATCGACGCGATGTGCTCGCATCTAAGGATAGCTGAAGAAGCGGTATCTGGATCGGAGTACGAAGCTGTATTCGCGGCGATCCATCGCCGTCGTCTGAATTGGATCCCTGTTCTTCAGATGCAGAAGTATCATTCCATCGCTGAAGTAGCGATCGAGCTTCAGAAAGTGGCGGCTAAGAAAGCGGAGGATCTGAAACAGAAGAAAACAGAGGAGGAGGCGGAGGAAGATCTGAAAGAGGTGGTGGCGACGGAGGAAGAGGAAGTGAAGAAAGAGTGTTTTAACGGCGAGAAAGTAACGGAGAATGACGTAAACGGAGATGTAGAAGACGTTGAAGATGATTCACCAACTAGTGATATCACTGATTCAGGTTCTCATCAGGATGTTCACCAAACTGTTGTTGCGGATACTGCACATCAGATTATATGCCATAGCCATGAAGATTGTGATGCACGTTCATGTGAGATCAAACCTATCAAAGGTTTCCAAGCTAAAGAACAAGTCAAAGGCCACACTGTGAATGTTGTGAAAGGACTAAAGCTGTATGAAGAGTTACTTAAAGAAGATGAGATATCTAAATTGTTAGACTTTGTGGCAGAACTACGAGAAGCTGGCATAAACGGGAAGCTTGCAGGTGAGAGCTTTATACTGTTCAACAAACAGATTAAAGGGAACAAGAGAGAGCTGATTCAGCTTGGTGTCCCCATCTTTGGTCATGTCAAGGCGGATGAAAACTCTAACGACACCAACAACTCTGTTAACATCGAGCCAATTCCACCACTTCTTGAGAGTGTCATTGATCACTTTGTCACATGGAGACTCATCCCAGAATACAAGAGACCTAACGGCTGTGTCATCAACTTCTTTGAAGAGGGTGAATACTCACAGCCTTTCCTCAAACCACCTCACTTAGAACAACCAATCTCCACTCTTGTCCTCTCTGAATCAACAATGGCCTATGGACGCATTCTCTCAAGTGACAACGAAGGCAACTTCAGAGGACCTTTGACACTCTCTCTCAAACAAGGATCTTTGTTGGTGATGAGAGGGAACAGTGCAGACATGGCAAGACATGTAATGTGTCCATCACAAAACAAAAGAGTAAGCATCACATTCTTTCGTATTCGACCTGACACATATCATAACCATTCACAACCCAACAGTCCTCGCAACGACGGTGTCATGACAATGTGGCAACCCTACCAAATGACACCAACTCCATTCCTCAATGGTTATGATCATTCAATTGACATGATGCCAAAACTTGGAGTCCTACGTCCTCCAATGGTCATGATGGCACCACCACCGGTTCAACCAATGATATTACCAAGTCCCAATGTGATGGGAACCGGTGGTGGTACCGGTGTTTTCTTACCATGGGCCTCTGTTAATAGCTCAAGAAAACATGTGAAGCATTTGCCTCCACGCGCGCAGAAGAAGCGATTACTTCCGCTTCCTCCTGCTGCTTCTTCTTCTCCAGCTGGAGGATCCACCTCTGAGCCTGTGATCACTGTAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

569

Amino Acids

62.69

Weight (kDa)

5.75

Isoelectric Point (pI)

50.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0010863)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 812
Acc36I ACCTGC 1 cut(s) 812
Acc65I GGTACC 1 cut(s) 1547
AccB1I GGYRCC 2 cut(s) 1486, 1547
AccB7I CCANNNNNTGG 1 cut(s) 1454
AccII CGCG 5 cut(s) 188, 200, 266, 1617, 1619
AclWI GGATC 8 cut(s) 250, 265, 289, 302, 387, 1225, 1671, 1684
AcsI RAATTY 1 cut(s) 170
AcuI CTGAAG 5 cut(s) 246, 290, 335, 354, 1168
AdeI CACNNNGTG 1 cut(s) 706
AfaI GTAC 2 cut(s) 251, 1549
AfiI CCNNNNNNNGG 4 cut(s) 668, 899, 1454, 1673
AflIII ACRYGT 2 cut(s) 1261, 1594
AgeI ACCGGT 3 cut(s) 1495, 1538, 1550
AgsI TTSAA 7 cut(s) 55, 101, 524, 844, 1058, 1434, 1502
AhlI ACTAGT 1 cut(s) 539
Alw21I GWGCWC 1 cut(s) 209
Alw26I GTCTC 2 cut(s) 1000, 1021
AlwI GGATC 8 cut(s) 250, 265, 289, 302, 387, 1225, 1671, 1684
AlwNI CAGNNNCTG 1 cut(s) 47
AoxI GGCC 3 cut(s) 697, 1143, 1569
ApeKI GCWGC 3 cut(s) 14, 176, 1652
ApoI RAATTY 1 cut(s) 170
AsiGI ACCGGT 3 cut(s) 1495, 1538, 1550
Asp718I GGTACC 1 cut(s) 1547
AspLEI GCGC 3 cut(s) 19, 1619, 1621
AspS9I GGNCC 2 cut(s) 1190, 1569
AsuHPI GGTGA 6 cut(s) 97, 525, 569, 836, 1076, 1240
AvaII GGWCC 1 cut(s) 1190
BaeI ACNNNNGTAYC 2 cut(s) 1539, 1572
BamHI GGATCC 2 cut(s) 294, 1676
BanI GGYRCC 2 cut(s) 1486, 1547
BbsI GAAGAC 1 cut(s) 522
Bbv12I GWGCWC 1 cut(s) 209
BbvI GCAGC 3 cut(s) 26, 163, 1639
BccI CCATC 6 cut(s) 282, 335, 902, 1282, 1477, 1525
BceAI ACGGC 4 cut(s) 90, 264, 490, 1051
BciVI GTATCC 1 cut(s) 589
BclI TGATCA 3 cut(s) 988, 1426, 1695
BcoDI GTCTC 2 cut(s) 1000, 1021
BcuI ACTAGT 1 cut(s) 539
BfaI CTAG 1 cut(s) 540
BfmI CTRYAG 1 cut(s) 1701
BfoI RGCGCY 1 cut(s) 20
BfuAI ACCTGC 1 cut(s) 812
BfuI GTATCC 1 cut(s) 589
BglII AGATCT 1 cut(s) 418
BisI GCNGC 7 cut(s) 12, 15, 177, 180, 267, 363, 1653
BlsI GCNGC 7 cut(s) 13, 16, 178, 181, 268, 364, 1654
Bme18I GGWCC 1 cut(s) 1190
BmgT120I GGNCC 2 cut(s) 1190, 1569
BmiI GGNNCC 5 cut(s) 296, 1488, 1537, 1549, 1678
BmsI GCATC 6 cut(s) 133, 220, 300, 628, 1305, 1434
BpiI GAAGAC 1 cut(s) 522
BpmI CTGGAG 2 cut(s) 1650, 1692
BpuEI CTTGAG 3 cut(s) 995, 1147, 1570
Bsa29I ATCGAT 1 cut(s) 37
BsaI GGTCTC 1 cut(s) 1021
BsaJI CCNNGG 1 cut(s) 1565
BsaWI WCCGGW 4 cut(s) 94, 1495, 1538, 1550
BsaXI ACNNNNNCTCC 2 cut(s) 1390, 1420
Bsc4I CCNNNNNNNGG 4 cut(s) 668, 899, 1454, 1673
Bse118I RCCGGY 3 cut(s) 1495, 1538, 1550
Bse1I ACTGG 1 cut(s) 52
BseCI ATCGAT 1 cut(s) 37
BseDI CCNNGG 1 cut(s) 1565
BseGI GGATG 3 cut(s) 577, 922, 1011
BseLI CCNNNNNNNGG 4 cut(s) 668, 899, 1454, 1673
BseMII CTCAG 1 cut(s) 1677
BseNI ACTGG 1 cut(s) 52
BsePI GCGCGC 1 cut(s) 1617
BseRI GAGGAG 3 cut(s) 180, 416, 419
BseXI GCAGC 3 cut(s) 26, 163, 1639
BsgI GTGCAG 2 cut(s) 585, 1266
Bsh1236I CGCG 5 cut(s) 188, 200, 266, 1617, 1619
Bsh1285I CGRYCG 1 cut(s) 345
BshFI GGCC 3 cut(s) 699, 1145, 1571
BshNI GGYRCC 2 cut(s) 1486, 1547
BshTI ACCGGT 3 cut(s) 1495, 1538, 1550
BshVI ATCGAT 1 cut(s) 37
BsiEI CGRYCG 1 cut(s) 345
BsiHKAI GWGCWC 1 cut(s) 209
BsiSI CCGG 5 cut(s) 95, 110, 1496, 1539, 1551
BslFI GGGAC 2 cut(s) 875, 1506
BslI CCNNNNNNNGG 4 cut(s) 668, 899, 1454, 1673
BsmAI GTCTC 2 cut(s) 1000, 1021
BsmFI GGGAC 2 cut(s) 875, 1506
BsmI GAATGC 1 cut(s) 1155
BsnI GGCC 3 cut(s) 699, 1145, 1571
Bso31I GGTCTC 1 cut(s) 1021
Bsp1286I GDGCHC 1 cut(s) 209
Bsp19I CCATGG 1 cut(s) 1565
BspANI GGCC 3 cut(s) 699, 1145, 1571
BspCNI CTCAG 1 cut(s) 1678
BspDI ATCGAT 1 cut(s) 37
BspFNI CGCG 5 cut(s) 188, 200, 266, 1617, 1619
BspHI TCATGA 2 cut(s) 1371, 1479
BspLI GGNNCC 5 cut(s) 296, 1488, 1537, 1549, 1678
BspMI ACCTGC 1 cut(s) 812
BspPI GGATC 8 cut(s) 250, 265, 289, 302, 387, 1225, 1671, 1684
BspT107I GGYRCC 2 cut(s) 1486, 1547
BspTNI GGTCTC 1 cut(s) 1021
BsrFI RCCGGY 3 cut(s) 1495, 1538, 1550
BsrI ACTGG 1 cut(s) 52
BssAI RCCGGY 3 cut(s) 1495, 1538, 1550
BssECI CCNNGG 1 cut(s) 1565
BssHII GCGCGC 1 cut(s) 1617
BssT1I CCWWGG 1 cut(s) 1565
Bst4CI ACNGT 8 cut(s) 118, 586, 706, 840, 1244, 1352, 1367, 1702
Bst6I CTCTTC 3 cut(s) 441, 732, 1053
BstC8I GCNNGC 6 cut(s) 21, 25, 209, 802, 819, 1619
BstDEI CTNAG 4 cut(s) 215, 366, 1099, 1686
BstDSI CCRYGG 1 cut(s) 1565
BstENI CCTNNNNNAGG 1 cut(s) 666
BstF5I GGATG 3 cut(s) 577, 922, 1011
BstFNI CGCG 5 cut(s) 188, 200, 266, 1617, 1619
BstH2I RGCGCY 1 cut(s) 20
BstHHI GCGC 3 cut(s) 19, 1619, 1621
BstMAI GTCTC 2 cut(s) 1000, 1021
BstMCI CGRYCG 1 cut(s) 345
BstNSI RCATGY 2 cut(s) 1265, 1598
BstSFI CTRYAG 1 cut(s) 1701
BstUI CGCG 5 cut(s) 188, 200, 266, 1617, 1619
BstV1I GCAGC 3 cut(s) 26, 163, 1639
BstV2I GAAGAC 1 cut(s) 522
BstX2I RGATCY 5 cut(s) 294, 379, 418, 1217, 1676
BstXI CCANNNNNNTGG 1 cut(s) 1531
BstYI RGATCY 5 cut(s) 294, 379, 418, 1217, 1676
Bsu15I ATCGAT 1 cut(s) 37
BsuI GTATCC 1 cut(s) 589
BsuRI GGCC 3 cut(s) 699, 1145, 1571
BsuTUI ATCGAT 1 cut(s) 37
BtgI CCRYGG 1 cut(s) 1565
BtgZI GCGATG 3 cut(s) 215, 260, 313
BtsCI GGATG 3 cut(s) 577, 922, 1011
BtsIMutI CAGTG 5 cut(s) 45, 549, 702, 1249, 1698
BveI ACCTGC 1 cut(s) 812
Cac8I GCNNGC 6 cut(s) 21, 25, 209, 802, 819, 1619
CaiI CAGNNNCTG 1 cut(s) 47
CciI TCATGA 2 cut(s) 1371, 1479
CfoI GCGC 3 cut(s) 19, 1619, 1621
Cfr10I RCCGGY 3 cut(s) 1495, 1538, 1550
Cfr13I GGNCC 2 cut(s) 1190, 1569
ClaI ATCGAT 1 cut(s) 37
CseI GACGC 2 cut(s) 206, 1161
Csp6I GTAC 2 cut(s) 250, 1548
CspAI ACCGGT 3 cut(s) 1495, 1538, 1550
CviQI GTAC 2 cut(s) 250, 1548
DdeI CTNAG 4 cut(s) 215, 366, 1099, 1686
DraIII CACNNNGTG 1 cut(s) 706
Eam1104I CTCTTC 3 cut(s) 441, 732, 1053
EarI CTCTTC 3 cut(s) 441, 732, 1053
EciI GGCGGA 2 cut(s) 425, 929
Eco130I CCWWGG 1 cut(s) 1565
Eco31I GGTCTC 1 cut(s) 1021
Eco32I GATATC 2 cut(s) 547, 762
Eco47I GGWCC 1 cut(s) 1190
Eco57I CTGAAG 5 cut(s) 246, 290, 335, 354, 1168
EcoNI CCTNNNNNAGG 1 cut(s) 666
EcoO109I RGGNCCY 1 cut(s) 1190
EcoRI GAATTC 1 cut(s) 170
EcoRV GATATC 2 cut(s) 547, 762
EcoT14I CCWWGG 1 cut(s) 1565
ErhI CCWWGG 1 cut(s) 1565
FalI AAGNNNNNCTT 2 cut(s) 729, 761
FaqI GGGAC 2 cut(s) 875, 1506
FbaI TGATCA 3 cut(s) 988, 1426, 1695
Fnu4HI GCNGC 7 cut(s) 12, 15, 177, 180, 267, 363, 1653
FokI GGATG 3 cut(s) 584, 929, 998
Fsp4HI GCNGC 7 cut(s) 12, 15, 177, 180, 267, 363, 1653
FspBI CTAG 1 cut(s) 540
GlaI GCGC 3 cut(s) 18, 1618, 1620
GluI GCNGC 7 cut(s) 12, 15, 177, 180, 267, 363, 1653
GsuI CTGGAG 2 cut(s) 1650, 1692
HaeII RGCGCY 1 cut(s) 20
HaeIII GGCC 3 cut(s) 699, 1145, 1571
HapII CCGG 5 cut(s) 95, 110, 1496, 1539, 1551
HgaI GACGC 2 cut(s) 206, 1161
HhaI GCGC 3 cut(s) 19, 1619, 1621
Hin6I GCGC 3 cut(s) 17, 1617, 1619
HinP1I GCGC 3 cut(s) 17, 1617, 1619
HincII GTYRAC 1 cut(s) 949
HindII GTYRAC 1 cut(s) 949
HindIII AAGCTT 1 cut(s) 815
HinfI GANTC 6 cut(s) 530, 554, 877, 1008, 1133, 1458
HpaI GTTAAC 1 cut(s) 949
HpaII CCGG 5 cut(s) 95, 110, 1496, 1539, 1551
HphI GGTGA 6 cut(s) 97, 525, 569, 836, 1076, 1240
Hpy166II GTNNAC 3 cut(s) 502, 577, 949
Hpy188III TCNNGA 7 cut(s) 70, 240, 569, 974, 1372, 1480, 1587
Hpy8I GTNNAC 3 cut(s) 502, 577, 949
Hpy99I CGWCG 5 cut(s) 76, 200, 285, 442, 1367
HpyAV CCTTC 3 cut(s) 73, 122, 1169
HpyCH4III ACNGT 8 cut(s) 118, 586, 706, 840, 1244, 1352, 1367, 1702
HpyCH4IV ACGT 5 cut(s) 66, 498, 519, 643, 1465
HpyCH4V TGCA 5 cut(s) 313, 602, 641, 821, 1247
HpyF3I CTNAG 4 cut(s) 215, 366, 1099, 1686
HpySE526I ACGT 5 cut(s) 66, 498, 519, 643, 1465
HspAI GCGC 3 cut(s) 17, 1617, 1619
KpnI GGTACC 1 cut(s) 1551
Ksp22I TGATCA 3 cut(s) 988, 1426, 1695
KspAI GTTAAC 1 cut(s) 949
Lsp1109I GCAGC 3 cut(s) 26, 163, 1639
LweI GCATC 6 cut(s) 133, 220, 300, 628, 1305, 1434
MaeI CTAG 1 cut(s) 540
MaeII ACGT 5 cut(s) 66, 498, 519, 643, 1465
MaeIII GTNAC 5 cut(s) 67, 484, 741, 997, 1166
MfeI CAATTG 1 cut(s) 1434
MflI RGATCY 5 cut(s) 294, 379, 418, 1217, 1676
MhlI GDGCHC 1 cut(s) 209
MluCI AATT 5 cut(s) 170, 289, 767, 960, 1434
MlyI GAGTC 2 cut(s) 1002, 1467
MseI TTAA 6 cut(s) 471, 747, 855, 948, 1578, 1708
MslI CAYNNNNRTG 4 cut(s) 570, 624, 646, 1376
MspA1I CMGCKG 1 cut(s) 1670
MspI CCGG 5 cut(s) 95, 110, 1496, 1539, 1551
MunI CAATTG 1 cut(s) 1434
Mva1269I GAATGC 1 cut(s) 1155
MvnI CGCG 5 cut(s) 188, 200, 266, 1617, 1619
NcoI CCATGG 1 cut(s) 1565
NlaIV GGNNCC 5 cut(s) 296, 1488, 1537, 1549, 1678
NmuCI GTSAC 3 cut(s) 67, 997, 1166
NspI RCATGY 2 cut(s) 1265, 1598
PagI TCATGA 2 cut(s) 1371, 1479
PaqCI CACCTGC 1 cut(s) 812
PauI GCGCGC 1 cut(s) 1617
PciI ACATGT 2 cut(s) 1261, 1594
PcsI WCGNNNNNNNCGW 1 cut(s) 192
PctI GAATGC 1 cut(s) 1155
PfeI GAWTC 4 cut(s) 530, 554, 877, 1133
PflFI GACNNNGTC 1 cut(s) 1367
PflMI CCANNNNNTGG 1 cut(s) 1454
PinAI ACCGGT 3 cut(s) 1495, 1538, 1550
PkrI GCNGC 7 cut(s) 13, 16, 178, 181, 268, 364, 1654
Ple19I CGATCG 1 cut(s) 345
PleI GAGTC 2 cut(s) 1002, 1466
PpsI GAGTC 2 cut(s) 1002, 1466
PpuMI RGGWCCY 1 cut(s) 1190
PscI ACATGT 2 cut(s) 1261, 1594
Psp5II RGGWCCY 1 cut(s) 1190
PspN4I GGNNCC 5 cut(s) 296, 1488, 1537, 1549, 1678
PspPI GGNCC 2 cut(s) 1190, 1569
PspPPI RGGWCCY 1 cut(s) 1190
PstNI CAGNNNCTG 1 cut(s) 47
PsuI RGATCY 5 cut(s) 294, 379, 418, 1217, 1676
PsyI GACNNNGTC 1 cut(s) 1367
PteI GCGCGC 1 cut(s) 1617
PvuI CGATCG 1 cut(s) 345
PvuII CAGCTG 1 cut(s) 1670
RsaI GTAC 2 cut(s) 251, 1549
RsaNI GTAC 2 cut(s) 250, 1548
RseI CAYNNNNRTG 4 cut(s) 570, 624, 646, 1376
SaqAI TTAA 6 cut(s) 471, 747, 855, 948, 1578, 1708
SatI GCNGC 7 cut(s) 12, 15, 177, 180, 267, 363, 1653
Sau96I GGNCC 2 cut(s) 1190, 1569
SchI GAGTC 2 cut(s) 1002, 1467
SduI GDGCHC 1 cut(s) 209
SfaNI GCATC 6 cut(s) 133, 220, 300, 628, 1305, 1434
SfcI CTRYAG 1 cut(s) 1701
SinI GGWCC 1 cut(s) 1190
SmiMI CAYNNNNRTG 4 cut(s) 570, 624, 646, 1376
SmlI CTYRAG 3 cut(s) 974, 1162, 1585
SmoI CTYRAG 3 cut(s) 974, 1162, 1585
SpeI ACTAGT 1 cut(s) 539
Sse9I AATT 5 cut(s) 170, 289, 767, 960, 1434
SspMI CTAG 1 cut(s) 540
StyI CCWWGG 1 cut(s) 1565
TaaI ACNGT 8 cut(s) 118, 586, 706, 840, 1244, 1352, 1367, 1702
TaiI ACGT 5 cut(s) 69, 501, 522, 646, 1468
TaqI TCGA 5 cut(s) 37, 195, 345, 954, 1315
TasI AATT 5 cut(s) 170, 289, 767, 960, 1434
TauI GCSGC 4 cut(s) 14, 182, 269, 365
TfiI GAWTC 4 cut(s) 530, 554, 877, 1133
Tru1I TTAA 6 cut(s) 471, 747, 855, 948, 1578, 1708
Tru9I TTAA 6 cut(s) 471, 747, 855, 948, 1578, 1708
TscAI CASTG 5 cut(s) 52, 556, 709, 1249, 1705
TseFI GTSAC 3 cut(s) 67, 997, 1166
TseI GCWGC 3 cut(s) 14, 176, 1652
Tsp45I GTSAC 3 cut(s) 67, 997, 1166
TspDTI ATGAA 4 cut(s) 636, 642, 750, 933
TspGWI ACGGA 3 cut(s) 455, 503, 519
TspRI CASTG 5 cut(s) 52, 556, 709, 1249, 1705
Tth111I GACNNNGTC 1 cut(s) 1367
Van91I CCANNNNNTGG 1 cut(s) 1454
VpaK11BI GGWCC 1 cut(s) 1190
XagI CCTNNNNNAGG 1 cut(s) 666
XapI RAATTY 1 cut(s) 170
XceI RCATGY 2 cut(s) 1265, 1598
XspI CTAG 1 cut(s) 540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.